ccdc174


Basic Information

Item Value
gene id ccdc174
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36061465 ~ 36066292 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254275.3
ATGGCAGCGCCGGGCTGTTTTCGTCTCTTAACAGCATCAGTGTAAAGATGGCGGCGTGTATATGagctgtttatttacattaaatatccATACCGGATGAAAACATGgataaaaagaagaagcagTATAATGTCACAGCTTCGTCGCTGGTTGACCTGAAAGCTGAGCTTTATCGGAAGCAGGaggcatttaaaaatgaaagactTTCTAAGGATGTTGGAACTGCACCCAAATCACACACCAAAGTAAAGAAGCCCAACATTTGGACCAAACAAAATGAAGGGGTGTCTGCTCGTGCTCAGAGAGATGTAGAACAAACtgtggaagaagaaaagaactTGGACAAATCAAGGCAGAAGTTGGAGGAGAAAGTAAGACTCTATGAACAAATGACCAAAGGAGATTTCCCAGATGAAGAGACGGAAAGCCTTTACTTGGTTGACTTTACACAGAAGATAATTGACCAGAAGAAAGGAATACAAAACAGAGAGGCTGAGAAAGGAGACAGAGATGGAGAAGACTCTGACACACATGTCCCCATTCCACCCCCACAGAACAAAGAGGAGGAGTGgGTGGACTATGTTGATGCATTGGGTAGATCAAGGAAGTGTTTAAGGAAAGATTTACCAGAGTTTCAGAAAATGGATCAGGATTTACAAAGCAAAAAAGTGACTGGAGCTGACAGGACTTTGTTGTCTGAAGATATGAGGCGGGAGATGCAGAGAGAACAGTGGgaaagggaggaggaggagcagatgAAGAGGCCTGTGGGACCAATTCACTACGAAAATATCAGAGATCAAGaggCCCGAGAGCTGGGTGTTGGATACTTTGCTTTTGCTCATGATGAGCAACAGCgcaaaaaacagagagaaacttTAGATATGCTGAGAGACCAGACCACAGAGCAGCGCAACAAGCGGGAGCAGCTGAAGGAGAAGAGGAAAGCTTTGCTTGAAGCTCGGTTGGCAAAAGTGAGGATgaggaaaatgaagaaaagcaaGCTAGAGTCTGGAGATGAGTCTGCTGCTGCTCCTGAGGAAGATGTTGACAAAGATGAGGATGAGGCTGAAGATGTGATTGGGCCTTCTCCATCTGAGACTGTGGTAAAGAAAGTGGAGGTTGAGATTCAAGAGAGAAAAGACTCCAGACCTGGGGTGCCGCATGTCAGAGAGTGGGACAGAGGCAAAGAATTCTCCTGGGGTCAGTGGACCAGTCGTCGTCGCGAGGAACGCGATTCAGATTTTGCCCCGCCCACTTCGTACTTTGCAGATGAGAGAAGGGCCAATCATACAAGACCTGGAAAAGAGGGCCACAGCAAAggaaatatttcatttaaatggtCTCAAAAACAGAGGGGATCAGATCAGGAGGGCACAGACATGCAAACACACTTTACACGTGTTCCATTTACAGACCAGCCTGCATCTTCACAGCCTCAACAAGGACCTTTACCACCCAATCAGGCACAGAGTGTGGATCAGCTTTTATCTTTCTATAAAAACTCTGTTTGAAACTTTCAACAAGTAgatcattttgtttatttctcaaCTTAAACTTGCTCTTTTACTAAAGTGATTGCCAAAAATTGATCTGGTTAtatttgaaaaagtaaaaaatggtaaatatgCAACACCTGTTGTTGCATTTGTTTACATCACTAAAAGAAACAGGATTTGTTTCCTGGAATTTAATGAGGGATACTGTTCAGTCCAGTGCTGATAGATAGATCTAGGTATTAGATCTGCATTCGACCTTGATGTCACAGATCTTTCTGCCCCAGACttcataaaacatgaaaaaatgtgCGCAGTGTACAATGACTTTTGTTGAGATTTATTTTATccacaaataaacatacattttagaaca

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K25178 CCDC174; coiled-coil domain-containing protein 174

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254275.3 True 1872 mRNA 0.43 11 36061465 36066292

Neighbor

gene id symbol gene type direction distance location
tatdn2 NA coding upstream 5109 36050510 ~ 36056356 (+)
LOC103026553 vhl coding upstream 11063 36047897 ~ 36050402 (+)
crbn crbn,LOC107711034,LOC107748399 coding upstream 14552 36039192 ~ 36046913 (+)
tspo tspo,LOC107721166,LOC107568174,LOC107667354,LOC107584504 coding upstream 105923 35952041 ~ 35955542 (+)
ppil1 ppil1,LOC107667353 coding upstream 155447 35901223 ~ 35906018 (+)
LOC103028900 LOC108439894 coding downstream 685 36066977 ~ 36075546 (+)
col7a1 col7a1 coding downstream 63692 36129984 ~ 36195424 (+)
LOC111193774 col7a1 coding downstream 139380 36205672 ~ 36218972 (+)
LOC103025322 LOC108439925,LOC100332423,LOC107748417,LOC107582687,LOC107667408,LOC107585110 coding downstream 165644 36231936 ~ 36243389 (+)
trnaf-gaa_2 NA coding downstream 182481 36248773 ~ 36248845 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding upstream 61409 35990033 ~ 36000056 (+)
G116050 NA non-coding upstream 128259 35930924 ~ 35933206 (+)
LOC111193772 NA non-coding upstream 162072 35894947 ~ 35899393 (+)
G116020 NA non-coding upstream 198642 35862214 ~ 35862823 (+)
G115915 eif4enif1 non-coding upstream 384624 35676178 ~ 35676841 (+)
G116138 NA non-coding downstream 123482 36189774 ~ 36223578 (+)
G116155 NA non-coding downstream 240058 36306350 ~ 36306762 (+)
G116255 NA non-coding downstream 350516 36416808 ~ 36462597 (+)
LOC111193778 NA non-coding downstream 434941 36501233 ~ 36503562 (+)
G116349 LOC108440912,LOC108439999 non-coding downstream 665856 36732148 ~ 36742014 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 73405 35982119 ~ 35988060 (+)
tomm6 NA other upstream 93587 35958543 ~ 35967878 (+)
G115931 NA other upstream 327106 35730379 ~ 35734359 (+)
G115917 NA other upstream 385430 35642874 ~ 35676035 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 501739 35553601 ~ 35559726 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 276693 36342985 ~ 36359777 (+)
LOC103044253 LOC108440873 other downstream 591100 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 1033722 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 1458559 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 2323985 38390277 ~ 38394530 (+)

Expression


Co-expression Network