LOC103028900 (LOC108439894)


Basic Information

Item Value
gene id LOC103028900
gene name LOC108439894
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36066977 ~ 36075546 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254276.3
agttttctgtgtgtgtgtgcagtttgtggaagagtgtgtgtgcagtcagtgtgtgtgctgcagtCAGAAACAGAGCAGTGAGAGATTATATGTGAGGAACTATGAGGGAGAAGACCGTTTAGTTAGCAAAATTTAGTATAGCAAGGGAGTTCCTGAggatttaatgtgtgtgtttgttttgtgagTTTGTGGCATTCTGTGAGCAGTTCTGCACTTAAACACTGTGTGAGGGCACTGACAAGACAATGGGATCAAATGAAGAATCAGCTCCGAGTGTGAGTGCCAACAGTATCAAGATCACTGATATCACGCAGGATGGAGAAACGCTGACTTTTGCCATCACATCTCAGAAGtcgaACAGCAGCGCaggggtgtgtgtttttaggaCCTATGAAGATTTTGACTGGCTGCAGCAGAGTCTTCTCTCTCAGGAGGACGTTCCAGGACTTCTTGGAGTCATATTTCCACCTCTGCCTGGAAAGCCACTGCCTTCCACCTCATTCACACAGGCTAAAGCGCTGAAACAGTTTGgGTTCCTGGCTCTAGGGGATGAATGGAAGATTTATCGTAAAGCTTTAGAGCTTTATTTGCAGCAGGTGGCAGCACACACCACTCTCAGCAAGAGCAAAGCACTCTCCAGTTTCTTCAGCAGCACTGAGTCGCCTGGAAAACAGCGTGGGAAAAAAGGAATATTCAACCGCCTTAGTCATGTTATGGAGGAGATGAGGAAGGAGGGTCATAAGGATGTGGATAAATTCTttcagagcgagagagacagctGCACACATCTCTCTGTTCTGTTCAAAGTGTCCACAGAGAAATTTCTCGACACTGTGCTGACGAAGCAAAAACTCGCTGTGGCATGTGGTCATTTCTCTACTTCATTGCATCTTGTGTGCAACCATGACAATCCAGCTGCTGTGACCTTCtcaaaGATTTGTCTGAAGCTGTCTGATATTATTGAAGCAGTGAAGGTAAACTTTGAGAAAGTGTCTGATAATGACGTCTCCTCTATGGGTTTGGCTCTGGATCTGGAGTCCCGCTACCAGGAGGCGAAGAAGgaaatgcTGTTTAGAAGAACCTGCAAACTGGTGGAACTGGAAGCAGCCAACAGGAACTCTGAAAGAGCCAAGCCTAATAAGAAGGCTATAATGGAGGGAGTTCAGAAAGCCACGCAGAAGGAGTTTAACCTCATTTCATCTGTGgcaaaaaaagagattgaGCAATACCACAGAGCCCGTGTCAGTGTGCTGCGAGACTTTCTGGTCTCTTGGTGTGAGAaacagctcagcacagctcaGGAAACCTCTGCCCTCTTCTCTCAGCACCTGGAAGCTTGTAGAGGATTTGTGGTGTAAAGCAGCAGCTTTCATTTGTTCAATTTGGTGAAAAGACATAATTTGATCATTGAATCAGGTGTTTAATGATGCTCAAGTATATGATTTCAACACATATTCTGCACTGATTGTTCACCGAGATGTTTTTAAGTAAAACAACAAACATGAATTAACCAAA

Function

NR:

description
PREDICTED: sorting nexin-6-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254276.3 True 1515 mRNA 0.45 14 36066977 36075546

Neighbor

gene id symbol gene type direction distance location
ccdc174 NA coding upstream 685 36061465 ~ 36066292 (+)
tatdn2 NA coding upstream 10621 36050510 ~ 36056356 (+)
LOC103026553 vhl coding upstream 16575 36047897 ~ 36050402 (+)
crbn crbn,LOC107711034,LOC107748399 coding upstream 20064 36039192 ~ 36046913 (+)
tspo tspo,LOC107721166,LOC107568174,LOC107667354,LOC107584504 coding upstream 111435 35952041 ~ 35955542 (+)
col7a1 col7a1 coding downstream 54438 36129984 ~ 36195424 (+)
LOC111193774 col7a1 coding downstream 130126 36205672 ~ 36218972 (+)
LOC103025322 LOC108439925,LOC100332423,LOC107748417,LOC107582687,LOC107667408,LOC107585110 coding downstream 156390 36231936 ~ 36243389 (+)
trnaf-gaa_2 NA coding downstream 173227 36248773 ~ 36248845 (+)
LOC103024783 ip6k2b,LOC103024783,LOC108440711,LOC107585112,LOC107673575,LOC107711042,LOC108272042,LOC107748392 coding downstream 211511 36287057 ~ 36291813 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding upstream 66921 35990033 ~ 36000056 (+)
G116050 NA non-coding upstream 133771 35930924 ~ 35933206 (+)
LOC111193772 NA non-coding upstream 167584 35894947 ~ 35899393 (+)
G116020 NA non-coding upstream 204154 35862214 ~ 35862823 (+)
G115915 eif4enif1 non-coding upstream 390136 35676178 ~ 35676841 (+)
G116138 NA non-coding downstream 114228 36189774 ~ 36223578 (+)
G116155 NA non-coding downstream 230804 36306350 ~ 36306762 (+)
G116255 NA non-coding downstream 341262 36416808 ~ 36462597 (+)
LOC111193778 NA non-coding downstream 425687 36501233 ~ 36503562 (+)
G116349 LOC108440912,LOC108439999 non-coding downstream 656602 36732148 ~ 36742014 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 78917 35982119 ~ 35988060 (+)
tomm6 NA other upstream 99099 35958543 ~ 35967878 (+)
G115931 NA other upstream 332618 35730379 ~ 35734359 (+)
G115917 NA other upstream 390942 35642874 ~ 35676035 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 507251 35553601 ~ 35559726 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 267439 36342985 ~ 36359777 (+)
LOC103044253 LOC108440873 other downstream 581846 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 1024468 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 1449305 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 2314731 38390277 ~ 38394530 (+)

Expression


Co-expression Network