LOC103029739


Basic Information

Item Value
gene id LOC103029739
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36013177 ~ 36029775 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254279.2
TGAGTTTGATACAGTTACTCAGCTCTGACTCTATTTTTGAGAGACTTATCTGAACGCTTTTCCTCAGGAAGCGGCGCGCAGTCTGAGGCCCCGCCCACCGCGCGCTTAGCGCTCGAGTCTCAGACTGTCCCCTGATTGAGCTGGTGGTCTGTGCTGTAGTGCAGCGGTGTAGCAGAAATACTTGAACAGACcgcttattaataataaactgttCTAAACTGAACCGCATACATGTACGGATTTTCTACATTCTGAACCCTGGAGAAGACCATGTGCCAAAATGAGCGCAAAACTAGAAGATCGCAGATCCCAGAGCCATGTTTGTCGTTCTAATGAGCAGTTAGGTCCACTGGCTGGAAAGTGCTGTCATCATCAGGGATGTAAACCAGATACTGCCCCAAAACCAAGATCAAACTCCAGACAGTTTCCTCACTTAAATAATTACTTGAAGAAATACACTAATCGAAACCTGACACCTGCTAACGTAGAGGCGCACCCTTTGAAAATCCACAGGAAGCAGGTATTTGGACACTTAAGACATGAAAATGACTTAAAACAAAGGGAGGCGTCAAAACCATGCAAAGACATAGGACATAAAGAACGGTCAATGCAATGGGAGGAGTTTACTGAAGTGGACAAGAAGGAGCACAGTGACCAAGGGGAGGAATTGGGCTATGGGGAGGAGCTGGCACAAGGCATTGAGCTTGATTGGGAGGTGCGTTTACATCATGGGGAAGGATTTGACTCTGAGGAGGGTGAGGGGCCCCGGGAACTTCTTTCTGACTCCTGCAGTGACAGGGATGAGGAAGTGCAAGGAGTGGCAAGACAGCTTCACAAAGTAGCGGAAAGAGAGGAAGGGTGGGAAGTGGTTGGGAATGGTGAAACAGGGTCACCCCGGAGTCTGGTTGATGTTCATTTTGGCATACAGTCAACACCTTATACACTTTACAAAACAATGATACATGAAACAAATAGAAACAAAATTCAGGCTTCATCTCTGAAGTTAAGAGACAATTTGTATACTGATGAAATTTTCAGTGCTAAAATGCTGTCAAATGGATTGTATTCAAATCACCTTTACTCCAATGGAATCAACACAAATGAGTTGTACCCAGATGGAACTGACACAGTCGCCATGTTTCCAGATGTGTGTGATGCGGGTGAAGCTCTGGCTGATGCCGATGGGCTCTCAGAGTGTGATCTTTTTGAGCAGACTGAAGCATCTCAGACATTGGAAGCGGAGGAGGTGGGTGATCCTGGGGATACGGTAATGCTCTCTGTGGAAGAGGGTTCTGAGAATTCAAGTGCATCTATATCGAACTTTGGGGAAGAGGGGGGTGAGGAAGAAAACAGTTCTCTCTCACTGAGGAATTCTTCTCAGGATTTACATTGCGAAACCTCTCAAGATTCTTCACTGTCAGATTCTACACTTTATGcaaagtcagagagagaagcTGGAATTCTCTCAGAATCATCTCATCAGCCTTCATCATCCTTCTCTTCATTCTGCTCATCTCAGTCTGAAATCACTTCAGATGAAGCGGAAAGCAGTGAGACCCTTCACTTTCACTGGAGTGAAATTGAACGTGCCACTCCGTCCAATGAACCTCACTTTAATACAACATTTGATCTTGACCTACCATGTTTCTCTTCACCAATACAGCCTGAAGACCAAAAATCACACCAGACACAGTTTGATGAACACGGAAAAGAAATATCAAATGCCCAGGGGGATCAGTTAATAATACCAACAGAGAACCCTAAGGTTCAGTCAGAAGAGCATGTGTATGAAGAAACCGAGCCAAAATTCCAACCCAAAAGCTTCCTGCAGACTAGGAAGTATTTAATGACTCGTTCCATCTCCATGGAACCTCCCTCTAACAGACTGGAACCAATGAACTCCACAGTATCAGGAAAGGAACGCTTGATGctacacacacagtcttactATACAAGTCATGATTTTCTGGGAGAAAGCTTGCCAGCCCTCACTGGCTCCTTAGGATGTCTCTCACCAGGATGTCCCTGCCCCCCCAGTGATCTAGGCATGAATAGCCATGACATACCACCCCCCTTCGAACTCTCTTCCATCACAAAGCGGCCAATTAGAAAAAGCACACCGGCTCTTCCAACCGATGTGTCTGCTTCATGCAGAAAACTGGACTTTGGCTTCAAACGCTACTTCTTGCCTTTACGGTTTCTGAGGAAATCTGAAAGAAGGAGCTTGGCTGATAACCGCTCCGTCTCCTCCAGATCCTCATCAGAATCAAGTCCACAGGGTTCTTGCAAAAGGCTGAATTTAATCAGGCAAAACGTAGGCAGCCCTGAACTCCACAGAGTACATGATTCTTCCCTACCATCATCCCCATCTTCCTTCCTTTATCAGAAGAacaagcagaggcagggccttaaCACACTTCTCAACAGCAACGTGTTGTCTGGTATTCCTAGTTCCTGGGACACTGATGACTTTCTTCACTCCTCTTTTACTAAGCCCTTTCCCCTTTCAAAACCTCGTTCTTTTTCTTCGCCCAATGTTGACTCGTCAGTGTACGAGAATGTTTTAAGCCCAAGTCCACACTATGAGAACGTGCAGCTACGCCTCTTAAATCCCACCAGTCAGAGGCACCGGAATCAGAGTTCTGCCAATGATATTGATGGTTACGTGGATATGAGCAGTCTGCCAGGCTTTCAGAGCAAGAGCCAGTCATCagaacaagagacagagagTGCCTATACTATCTGCTCTCCTGCTGTGAGGTCAGATGGATCAGTGAGTGTATCTGTAGGAGTGCCTTGTATaaaaaaggaggagaagaagggaTCAGAAATACTGACTGTCACTTGTTCTAGAGCATTTTATAGTGCAAAAGAGCTGCTGGACAGCGAGGCACAgcatttaaagaATTTGAAGCTTCTGACCGAGACTGTAGGTGGAGATGAGACACTAGGAGAACTCTGGAGTGATTTGCCTGCAATTTACACACTCCACCAAGACCTCCACACCCAACTGGAATCTCGGATCAAAGAGTGGGAGCAGAAGGAGGGAATTGCTGATATTATCTTGGATAAAAAAGCagagttttcatttttttcctccttcATCACTCACCATGACAGCAGAATGAAGTCTCTGGAGCAGATGGAGAACACACAGTTGGACATGACTTCTTTGAAGCAGCAGCTGCTGCAGGTGATTGTGAGAGTCCTGCAGTACCGCATGCTGCTAACAGattacaTGAATAATATTTCACCAAACACAAGCGAGTACAAGGATACTCAAGATGCTTTGACAGTGGTCTCTGATGTAGCTGACCTGACCAATGAGAGCCTCAGCAATGGAGTGGCTCTTCTGCGTCTGGTTCATATTGAGCACAATGTTTTAGGCTTGAAGAACTTACTACAGCCTAACAGGgtttttgtGAAAGAAGGCACCTTAATGAAGGTCAGCAGAAAGTCCAAACAGCCTCGTCACCTGTTCTTGATGAGTGATATAATGCTTTACACATACCCCCAACAAGATGGCAAATACAGACTTATCAACACTTTGACACTGACAGGAATGGAGGTTACTAAACTGATGATAGATAATACTCAGCATGCATTAAAGATTGAGTTAAAGGATACGTGTATCACTTTATCAACAAGCTCTTCTATAGAGAGGGATGATTGGTTTGTTACACTGAATCGGACAATAGCTGACCTCGGTTCAGTACTGGGGGAACCCACAGGCTGTTTAGAGttTGGGGAAACTGTGGAGGCGTGTCTAGGAGAAAATGCTCCGCCTCTGGTGTCTGTTTCTCAGGTGTCAGTATGCATGAACTGCCCTGTCCGCTTCAGCCTCACACACCGAAGGCACCACTGTCGAGCCTGTGGCaagGTTGTATGCAGAGACTGCTGCAGGAATAAAGTCCCTCTAAAATACCTGAAGAACAGACGAGCCAAAGTGTGTGATAAGTGCTACAGTGAGCTTTACAAACCAGATGAAGATGTTGCCATGGGAACGGGGAGCTCCAGTAGGCCACTGTCTGCTGTTTTCCAGAACATCCATCCCACCAGTCTGTGGAGGGGTCGCAAAGGCCAGTTGACTTTTAACCAGgggaTAGGGCCAGAGGGGGAGATGAGTGGGACTCTGGAGAGAAGTCGAAACAGTAGGCGGAGCTGGAAGAGCCTGTGGTTCCTTCTGAAAGATAAAGTGCTGTATACATACCCACAGCCTGAGGAGAGAATTGCGTGTGAGTCTCTTCCTCTGTTGGGTTTTTCGGTGAGGCCAGAAATTGAAGGAGAGAGCAGTGTGTTTCAGCTCTACCACAAAACAACACTTTACTATACATTCAAAGCTCAGGATACACACACTGCTCAGAGGTGGGTGAGTGCTATGGAAGAGGCCACAGTCctgtagctgctgctgttttagaAGGGCTGTTATCTCCCTTAAACTAAGACAAAATCCACACCTGACAAATGAAGAGTCCTGCAGTGTCATCACTACTTCAAATTGAAGCAGTTGTCAGATTGTAACAGTGCTAGGAGagccaaaaagaaaaacaaacccGCTTAGTGCTGGTCATTTATTAATGTAGAGAAGCAATCATCTGCCTATATAACTGTTATTTCTTATATATTGTTACCTTTCTTTTGTTatcttttatctttatatttatatgtcagttttttacatttgtacTAATTATATTTTGTAACAGGAACTGCATACGTAAGCGTAGCTtttgatatttcttttttttttataattttatttctaatttttcccattttctccccaatttacacggccaattacc
>XM_007254280.2
TGAGTTTGATACAGTTACTCAGCTCTGACTCTATTTTTGAGAGACTTATCTGAACGCTTTTCCTCAGGAAGCGGCGCGCAGTCTGAGGCCCCGCCCACCGCGCGCTTAGCGCTCGAGTCTCAGACTGTCCCCTGATTGAGCTGGTGGTCTGTGCTGTAGTGCAGCGGTGTAGCAGAAATACTTGAACAGACcgcttattaataataaactgttCTAAACTGAACCGCATACATGTACGGATTTTCTACATTCTGAACCCTGGAGAAGACCATGTGCCAAAATGAGCGCAAAACTAGAAGATCGCAGATCCCAGAGCCATGTTTGTCGTTCTAATGAGCAGTTAGGTCCACTGGCTGGAAAGTGCTGTCATCATCAGGGATGTAAACCAGATACTGCCCCAAAACCAAGATCAAACTCCAGACAGTTTCCTCACTTAAATAATTACTTGAAGAAATACACTAATCGAAACCTGACACCTGCTAACGTAGAGGCGCACCCTTTGAAAATCCACAGGAAGCAGGTATTTGGACACTTAAGACATGAAAATGACTTAAAACAAAGGGAGGCGTCAAAACCATGCAAAGACATAGGACATAAAGAACGGTCAATGCAATGGGAGGAGTTTACTGAAGTGGACAAGAAGGAGCACAGTGACCAAGGGGAGGAATTGGGCTATGGGGAGGAGCTGGCACAAGGCATTGAGCTTGATTGGGAGGTGCGTTTACATCATGGGGAAGGATTTGACTCTGAGGAGGGTGAGGGGCCCCGGGAACTTCTTTCTGACTCCTGCAGTGACAGGGATGAGGAAGTGCAAGGAGTGGCAAGACAGCTTCACAAAGTAGCGGAAAGAGAGGAAGGGTGGGAAGTGGTTGGGAATGGTGAAACAGGGTCACCCCGGAGTCTGGTTGATGTTCATTTTGGCATACAGTCAACACCTTATACACTTTACAAAACAATGATACATGAAACAAATAGAAACAAAATTCAGGCTTCATCTCTGAAGTTAAGAGACAATTTGTATACTGATGAAATTTTCAGTGCTAAAATGCTGTCAAATGGATTGTATTCAAATCACCTTTACTCCAATGGAATCAACACAAATGAGTTGTACCCAGATGGAACTGACACAGTCGCCATGTTTCCAGATGTGTGTGATGCGGGTGAAGCTCTGGCTGATGCCGATGGGCTCTCAGAGTGTGATCTTTTTGAGCAGACTGAAGCATCTCAGACATTGGAAGCGGAGGAGGTGGGTGATCCTGGGGATACGGTAATGCTCTCTGTGGAAGAGGGTTCTGAGAATTCAAGTGCATCTATATCGAACTTTGGGGAAGAGGGGGGTGAGGAAGAAAACAGTTCTCTCTCACTGAGGAATTCTTCTCAGGATTTACATTGCGAAACCTCTCAAGATTCTTCACTGTCAGATTCTACACTTTATGcaaagtcagagagagaagcTGGAATTCTCTCAGAATCATCTCATCAGCCTTCATCATCCTTCTCTTCATTCTGCTCATCTCAGTCTGAAATCACTTCAGATGAAGCGGAAAGCAGTGAGACCCTTCACTTTCACTGGAGTGAAATTGAACGTGCCACTCCGTCCAATGAACCTCACTTTAATACAACATTTGATCTTGACCTACCATGTTTCTCTTCACCAATACAGCCTGAAGACCAAAAATCACACCAGACACAGTTTGATGAACACGGAAAAGAAATATCAAATGCCCAGGGGGATCAGTTAATAATACCAACAGAGAACCCTAAGGTTCAGTCAGAAGAGCATGTGTATGAAGAAACCGAGCCAAAATTCCAACCCAAAAGCTTCCTGCAGACTAGGAAGTATTTAATGACTCGTTCCATCTCCATGGAACCTCCCTCTAACAGACTGGAACCAATGAACTCCACAGTATCAGGAAAGGAACGCTTGATGctacacacacagtcttactATACAAGTCATGATTTTCTGGGAGAAAGCTTGCCAGCCCTCACTGGCTCCTTAGGATGTCTCTCACCAGGATGTCCCTGCCCCCCCAGTGATCTAGGCATGAATAGCCATGACATACCACCCCCCTTCGAACTCTCTTCCATCACAAAGCGGCCAATTAGAAAAAGCACACCGGCTCTTCCAACCGATGTGTCTGCTTCATGCAGAAAACTGGACTTTGGCTTCAAACGCTACTTCTTGCCTTTACGGTTTCTGAGGAAATCTGAAAGAAGGAGCTTGGCTGATAACCGCTCCGTCTCCTCCAGATCCTCATCAGAATCAAGTCCACAGGGTTCTTGCAAAAGGCTGAATTTAATCAGGCAAAACGTAGGCAGCCCTGAACTCCACAGAGTACATGATTCTTCCCTACCATCATCCCCATCTTCCTTCCTTTATCAGAAGAacaagcagaggcagggccttaaCACACTTCTCAACAGCAACGTGTTGTCTGGTATTCCTAGTTCCTGGGACACTGATGACTTTCTTCACTCCTCTTTTACTAAGCCCTTTCCCCTTTCAAAACCTCGTTCTTTTTCTTCGCCCAATGTTGACTCGTCAGTGTACGAGAATGTTTTAAGCCCAAGTCCACACTATGAGAACGTGCAGCTACGCCTCTTAAATCCCACCAGTCAGAGGCACCGGAATCAGAGTTCTGCCAATGATATTGATGGTTACGTGGATATGAGCAGTCTGCCAGGCTTTCAGAGCAAGAGCCAGTCATCagaacaagagacagagagTGCCTATACTATCTGCTCTCCTGCTGTGAGGTCAGATGGATCAGTGAGTGTATCTGTAGGAGTGCCTTGTATaaaaaaggaggagaagaagggaTCAGAAATACTGACTGTCACTTGTTCTAGAGCATTTTATAGTGCAAAAGAGCTGCTGGACAGCGAGGCACAgcatttaaagaATTTGAAGCTTCTGACCGAGACTGTAGGTGGAGATGAGACACTAGGAGAACTCTGGAGTGATTTGCCTGCAATTTACACACTCCACCAAGACCTCCACACCCAACTGGAATCTCGGATCAAAGAGTGGGAGCAGAAGGAGGGAATTGCTGATATTATCTTGGATAAAAAAGCagagttttcatttttttcctccttcATCACTCACCATGACAGCAGAATGAAGTCTCTGGAGCAGATGGAGAACACATTGGACATGACTTCTTTGAAGCAGCAGCTGCTGCAGGTGATTGTGAGAGTCCTGCAGTACCGCATGCTGCTAACAGattacaTGAATAATATTTCACCAAACACAAGCGAGTACAAGGATACTCAAGATGCTTTGACAGTGGTCTCTGATGTAGCTGACCTGACCAATGAGAGCCTCAGCAATGGAGTGGCTCTTCTGCGTCTGGTTCATATTGAGCACAATGTTTTAGGCTTGAAGAACTTACTACAGCCTAACAGGgtttttgtGAAAGAAGGCACCTTAATGAAGGTCAGCAGAAAGTCCAAACAGCCTCGTCACCTGTTCTTGATGAGTGATATAATGCTTTACACATACCCCCAACAAGATGGCAAATACAGACTTATCAACACTTTGACACTGACAGGAATGGAGGTTACTAAACTGATGATAGATAATACTCAGCATGCATTAAAGATTGAGTTAAAGGATACGTGTATCACTTTATCAACAAGCTCTTCTATAGAGAGGGATGATTGGTTTGTTACACTGAATCGGACAATAGCTGACCTCGGTTCAGTACTGGGGGAACCCACAGGCTGTTTAGAGttTGGGGAAACTGTGGAGGCGTGTCTAGGAGAAAATGCTCCGCCTCTGGTGTCTGTTTCTCAGGTGTCAGTATGCATGAACTGCCCTGTCCGCTTCAGCCTCACACACCGAAGGCACCACTGTCGAGCCTGTGGCaagGTTGTATGCAGAGACTGCTGCAGGAATAAAGTCCCTCTAAAATACCTGAAGAACAGACGAGCCAAAGTGTGTGATAAGTGCTACAGTGAGCTTTACAAACCAGATGAAGATGTTGCCATGGGAACGGGGAGCTCCAGTAGGCCACTGTCTGCTGTTTTCCAGAACATCCATCCCACCAGTCTGTGGAGGGGTCGCAAAGGCCAGTTGACTTTTAACCAGgggaTAGGGCCAGAGGGGGAGATGAGTGGGACTCTGGAGAGAAGTCGAAACAGTAGGCGGAGCTGGAAGAGCCTGTGGTTCCTTCTGAAAGATAAAGTGCTGTATACATACCCACAGCCTGAGGAGAGAATTGCGTGTGAGTCTCTTCCTCTGTTGGGTTTTTCGGTGAGGCCAGAAATTGAAGGAGAGAGCAGTGTGTTTCAGCTCTACCACAAAACAACACTTTACTATACATTCAAAGCTCAGGATACACACACTGCTCAGAGGTGGGTGAGTGCTATGGAAGAGGCCACAGTCctgtagctgctgctgttttagaAGGGCTGTTATCTCCCTTAAACTAAGACAAAATCCACACCTGACAAATGAAGAGTCCTGCAGTGTCATCACTACTTCAAATTGAAGCAGTTGTCAGATTGTAACAGTGCTAGGAGagccaaaaagaaaaacaaacccGCTTAGTGCTGGTCATTTATTAATGTAGAGAAGCAATCATCTGCCTATATAACTGTTATTTCTTATATATTGTTACCTTTCTTTTGTTatcttttatctttatatttatatgtcagttttttacatttgtacTAATTATATTTTGTAACAGGAACTGCATACGTAAGCGTAGCTtttgatatttcttttttttttataattttatttctaatttttcccattttctccccaatttacacggccaattacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254279.2 True 4805 mRNA 0.45 21 36013177 36029775
XM_007254280.2 False 4802 mRNA 0.45 21 36013177 36029775

Neighbor

gene id symbol gene type direction distance location
LOC103030273 prkcda,LOC103030273,LOC108440644,LOC107673500,LOC107712078,LOC107721176,LOC107667398,LOC107582675 coding downstream 13260 35982094 ~ 35999917 (-)
ddi2 ddi2,LOC107673502,LOC107721177,LOC107667352,LOC107712079 coding downstream 33631 35969145 ~ 35979546 (-)
LOC103031953 NA coding downstream 45387 35960653 ~ 35967790 (-)
LOC103032599 frs3,LOC107584505,LOC107667350,LOC107568202,LOC107673473,LOC107721202 coding downstream 66343 35933366 ~ 35946834 (-)
LOC103031425 LOC108440580,LOC107673588 coding downstream 93760 35908222 ~ 35919417 (-)
LOC103025932 LOC103025932 coding upstream 6597 36036372 ~ 36039135 (-)
LOC103029202 LOC108440675,LOC108271813,LOC107711038,LOC107673578,LOC107667363 coding upstream 52339 36082114 ~ 36114040 (-)
LOC103030168 itpr1a,LOC108440748 coding upstream 330977 36360752 ~ 36427709 (-)
LOC103022488 LOC108439971 coding upstream 404157 36433932 ~ 36442755 (-)
smarcc2 smarcc2,LOC107711050,LOC107667400,LOC107748388 coding upstream 430208 36459983 ~ 36480201 (-)
G116097 NA non-coding downstream 64995 35947731 ~ 35948182 (-)
G116076 NA non-coding downstream 79931 35930934 ~ 35933246 (-)
G116092 ppil1,LOC107667353 non-coding downstream 107175 35901252 ~ 35906002 (-)
LOC111193771 NA non-coding downstream 114460 35892638 ~ 35898717 (-)
G116089 NA non-coding downstream 131610 35881367 ~ 35881567 (-)
G116166 NA non-coding upstream 13591 36043366 ~ 36044196 (-)
G116171 NA non-coding upstream 35840 36065615 ~ 36066279 (-)
LOC111193773 NA non-coding upstream 45703 36075478 ~ 36076803 (-)
LOC111193775 NA non-coding upstream 164770 36194545 ~ 36254205 (-)
G116219 uroc1 non-coding upstream 294365 36324140 ~ 36330054 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other downstream 54359 35955109 ~ 35958818 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other downstream 132886 35869803 ~ 35880291 (-)
G116068 myhz2,LOC108440470,LOC108443907,LOC107385141 other downstream 197855 35813621 ~ 35815322 (-)
LOC103033855 oxtr,LOC107749620 other downstream 1162025 34825836 ~ 34851152 (-)
G115681 emc3,LOC107584459,LOC107657885,LOC107667035,LOC101173295 other downstream 1490759 34520957 ~ 34522418 (-)
LOC103028059 ghrl other upstream 26788 36056563 ~ 36062284 (-)
LOC103023810 NA other upstream 992400 37022175 ~ 37031363 (-)
G116581 eif4b,LOC108441049 other upstream 1011586 37041361 ~ 37045788 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other upstream 2203699 38233474 ~ 38248624 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other upstream 2351495 38381270 ~ 38384598 (-)

Expression


Co-expression Network