tspo (tspo,LOC107721166,LOC107568174,LOC107667354,LOC107584504)


Basic Information

Item Value
gene id tspo
gene name tspo,LOC107721166,LOC107568174,LOC107667354,LOC107584504
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35952041 ~ 35955542 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254288.3
CGCTTCTGCGGCAGAATCAGCGCTCGTTTGTGAACTTTCAGCACCTCAGCTCAACATCATGTGTATCACATTACATCAGACAAGGAACCGACGGTCAGTTTTGTGGTTACGAAACTCAGCGGGTATGGCGCCTCATTTCGTAAATGCCTACACGCCCACTGCTGCACTGTTATCTAAAAACTCAGCTCTCAGCGTCACTGCGGTCTGGAGGACACCAGAACCATTAGCTGGGGGACTAGGGCCTGTCACTTGAAGATATGTGGATTCCATTGTTGGGTCTGACTGCTTTACCACATGTTGGTGGGCTCTATGGCGGGTTCATCACAAGAAAAGAGGTGAAGACCTGGTACACTACACTTAACAAGCCATCATGGAGGCCACCCAATGCTGCTTTTCCAGTGGTGTGGACCACGCTCTACACTGGCATGGGgtATGGTTCATACCTGGTGTGGAAAGAGCTGGGAGGCTTCAATGAGAATTCACTGGTTCCACTAGGGCTTTATGGCCTGCAGCTGGCACTGAACTGGGCTTGGACCCCAATCTTTTTTGGagcacacaaaataaaactgGCACTTATTGAGCTTGTGATGCTCTCGGGTACAGTGGCAGCTACCATGGTGTCTTGGTACCCAGTGAACCGTACTGCTACACTCCTGATGGTCCCATATATGGCCTGGCTCTGCTTGGCCACATCCCTTAACTACTGTATCTGGAGGGACAACCCAGAAACTAAAAAGGACTAGAGTGgacaaaaaggaaacaaaattaATGCACACAAACAGCAAGATATAATTTTCAACAGTCAATAACAAGAATCTGCCTTTAATCACATTAAGTGCATATTCAAGTGATATCTTATTATACACTTGGCAACCAATattgaaaaagtgtgaaaattaGATTAGATGTTTTATACTAACATTTTGCCTGCTTCCATGctaattttatattgtttaaattgCACTATGTAATtcttccaaaataaaataataaaaaaatgcatgtgaCATGTTGACTGTG
>XM_022675750.1
CACTTGGGCTGGACCAGAGTTTTGGCAGAAGGCTGCTGATATGTGGATTCCATTGTTGGGTCTGACTGCTTTACCACATGTTGGTGGGCTCTATGGCGGGTTCATCACAAGAAAAGAGGTGAAGACCTGGTACACTACACTTAACAAGCCATCATGGAGGCCACCCAATGCTGCTTTTCCAGTGGTGTGGACCACGCTCTACACTGGCATGGGgtATGGTTCATACCTGGTGTGGAAAGAGCTGGGAGGCTTCAATGAGAATTCACTGGTTCCACTAGGGCTTTATGGCCTGCAGCTGGCACTGAACTGGGCTTGGACCCCAATCTTTTTTGGagcacacaaaataaaactgGCACTTATTGAGCTTGTGATGCTCTCGGGTACAGTGGCAGCTACCATGGTGTCTTGGTACCCAGTGAACCGTACTGCTACACTCCTGATGGTCCCATATATGGCCTGGCTCTGCTTGGCCACATCCCTTAACTACTGTATCTGGAGGGACAACCCAGAAACTAAAAAGGACTAGAGTGgacaaaaaggaaacaaaattaATGCACACAAACAGCAAGATATAATTTTCAACAGTCAATAACAAGAATCTGCCTTTAATCACATTAAGTGCATATTCAAGTGATATCTTATTATACACTTGGCAACCAATattgaaaaagtgtgaaaattaGATTAGATGTTTTATACTAACATTTTGCCTGCTTCCATGctaattttatattgtttaaattgCACTATGTAATtcttccaaaataaaataataaaaaaatgcatgtgaCATGTTGACTGTG

Function

symbol description
tspo Acts upstream of or within primitive erythrocyte differentiation. Predicted to be located in membrane. Predicted to be active in mitochondrial outer membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axial blood vessel; blastomere; hematopoietic system; nervous system; and pleuroperitoneal region. Orthologous to several human genes including TSPO (translocator protein).

NR:

description
translocator protein

GO:

id name namespace
GO:0060319 primitive erythrocyte differentiation biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K05770 TSPO, BZRP; translocator protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254288.3 True 1020 mRNA 0.44 4 35952041 35955542
XM_022675750.1 False 803 mRNA 0.43 4 35953216 35955542

Neighbor

gene id symbol gene type direction distance location
ppil1 ppil1,LOC107667353 coding upstream 46023 35901223 ~ 35906018 (+)
LOC103033861 NA coding upstream 82609 35864138 ~ 35869432 (+)
LOC103035259 LOC103035259 coding upstream 90610 35858681 ~ 35861431 (+)
c13h1orf159 cunh1orf159,LOC103036790 coding upstream 97950 35849749 ~ 35854091 (+)
kbtbd12 kbtbd12,LOC107712091,LOC107721181,LOC107673613,LOC107584421 coding upstream 107508 35839437 ~ 35844533 (+)
crbn crbn,LOC107711034,LOC107748399 coding downstream 83650 36039192 ~ 36046913 (+)
LOC103026553 vhl coding downstream 92355 36047897 ~ 36050402 (+)
tatdn2 NA coding downstream 94968 36050510 ~ 36056356 (+)
ccdc174 NA coding downstream 105923 36061465 ~ 36066292 (+)
LOC103028900 LOC108439894 coding downstream 111435 36066977 ~ 36075546 (+)
G116050 NA non-coding upstream 18835 35930924 ~ 35933206 (+)
LOC111193772 NA non-coding upstream 52648 35894947 ~ 35899393 (+)
G116020 NA non-coding upstream 89218 35862214 ~ 35862823 (+)
G115915 eif4enif1 non-coding upstream 275200 35676178 ~ 35676841 (+)
G115925 patz1 non-coding upstream 287164 35661443 ~ 35664877 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding downstream 34491 35990033 ~ 36000056 (+)
G116138 NA non-coding downstream 234232 36189774 ~ 36223578 (+)
G116155 NA non-coding downstream 350808 36306350 ~ 36306762 (+)
G116255 NA non-coding downstream 461266 36416808 ~ 36462597 (+)
LOC111193778 NA non-coding downstream 545691 36501233 ~ 36503562 (+)
G115931 NA other upstream 217682 35730379 ~ 35734359 (+)
G115917 NA other upstream 276006 35642874 ~ 35676035 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 392315 35553601 ~ 35559726 (+)
LOC103023619 cadps,LOC106953609 other upstream 588401 35290828 ~ 35363640 (+)
LOC111193767 NA other upstream 821968 35057150 ~ 35130073 (+)
tomm6 NA other downstream 3001 35958543 ~ 35967878 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other downstream 26577 35982119 ~ 35988060 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 387443 36342985 ~ 36359777 (+)
LOC103044253 LOC108440873 other downstream 701850 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 1144472 37100014 ~ 37121327 (+)

Expression


Co-expression Network