ppil1 (ppil1,LOC107667353)


Basic Information

Item Value
gene id ppil1
gene name ppil1,LOC107667353
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35901223 ~ 35906018 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254293.3
AGCTGCACTCCTCCACTCCGCCAGCGGGCAGCACACGCTGTGTTTTTCTCCTCACAGCTGCAGAGAAGAAGCTTCGCACACCAGTCGCTTCCTACTCACGTTTTTGTTACATATTTAAAGATTATTTCGCGTATTTAACTTCGTATTTAACTCCAGCTCTACGGTTTTTTTTACAGCCCGCGATGTCAGGAATACCCCCGGACTCCTGGCAGCCGCCGACGGTTTCGCTTGAGACCAcGATGGGCACAATCGTGGTGGAACTGTATTGGAGGCATGCACCTAAAACCTGCAAGAACTTTGCAGAACTAGGCAGAAGAGGATATTACAACAATACCAAGTTTCATCGCATCATAAAGGACTTCATGGTGCAGGGCGGTGACCCAACAGGAACAGGTCGTGGTGGTGCATCTATTTATGGAAAACAGTTTGAAGATGAACTTCACCCAGAGCTGAAATTCACAGGTGCTGGAATCCTTGCGATGGCTAACGCAGGCCCAGACACTAACGGCAGTCAGTTCTTTCTGACCTTGGGTCCCACACAGTGGCTTGATGGCAAGCACAGCATATTTGGGCGAGTTTACCAGGGCATTGGTGTACTCAATCGAATTGGCATGGTAGAGACCAACAGTCAAGATCGGCCTGCTGATGATATAAAGATACTCAGAGTGAATCTACCCAACTGAAATGTTTTTTCCTCAAGTTTTCTTATTTTGTACAGTCTTTTCtaacaataaacacacagtttttaaattgt

Function

symbol description
ppil1 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein peptidyl-prolyl isomerization. Predicted to act upstream of or within protein folding. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human PPIL1 (peptidylprolyl isomerase like 1).

NR:

description
PREDICTED: peptidyl-prolyl cis-trans isomerase-like 1

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K12733 PPIL1; peptidyl-prolyl cis-trans isomerase-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254293.3 True 754 mRNA 0.46 4 35901223 35906018

Neighbor

gene id symbol gene type direction distance location
LOC103033861 NA coding upstream 31791 35864138 ~ 35869432 (+)
LOC103035259 LOC103035259 coding upstream 39792 35858681 ~ 35861431 (+)
c13h1orf159 cunh1orf159,LOC103036790 coding upstream 47132 35849749 ~ 35854091 (+)
kbtbd12 kbtbd12,LOC107712091,LOC107721181,LOC107673613,LOC107584421 coding upstream 56690 35839437 ~ 35844533 (+)
p4htm p4htm,LOC108440486,LOC107721183,LOC107673589,LOC107667396,LOC107584428,LOC107712096 coding upstream 72342 35820481 ~ 35828881 (+)
tspo tspo,LOC107721166,LOC107568174,LOC107667354,LOC107584504 coding downstream 46023 35952041 ~ 35955542 (+)
crbn crbn,LOC107711034,LOC107748399 coding downstream 133174 36039192 ~ 36046913 (+)
LOC103026553 vhl coding downstream 141879 36047897 ~ 36050402 (+)
tatdn2 NA coding downstream 144492 36050510 ~ 36056356 (+)
ccdc174 NA coding downstream 155447 36061465 ~ 36066292 (+)
LOC111193772 NA non-coding upstream 1830 35894947 ~ 35899393 (+)
G116020 NA non-coding upstream 38400 35862214 ~ 35862823 (+)
G115915 eif4enif1 non-coding upstream 224382 35676178 ~ 35676841 (+)
G115925 patz1 non-coding upstream 236346 35661443 ~ 35664877 (+)
G115876 LOC108271732 non-coding upstream 351676 35535980 ~ 35549547 (+)
G116050 NA non-coding downstream 24906 35930924 ~ 35933206 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding downstream 84015 35990033 ~ 36000056 (+)
G116138 NA non-coding downstream 283756 36189774 ~ 36223578 (+)
G116155 NA non-coding downstream 400332 36306350 ~ 36306762 (+)
G116255 NA non-coding downstream 510790 36416808 ~ 36462597 (+)
G115931 NA other upstream 166864 35730379 ~ 35734359 (+)
G115917 NA other upstream 225188 35642874 ~ 35676035 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 341497 35553601 ~ 35559726 (+)
LOC103023619 cadps,LOC106953609 other upstream 537583 35290828 ~ 35363640 (+)
LOC111193767 NA other upstream 771150 35057150 ~ 35130073 (+)
tomm6 NA other downstream 52525 35958543 ~ 35967878 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other downstream 76101 35982119 ~ 35988060 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 436967 36342985 ~ 36359777 (+)
LOC103044253 LOC108440873 other downstream 751374 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 1193996 37100014 ~ 37121327 (+)

Expression


Co-expression Network