LOC103035259 (LOC103035259)


Basic Information

Item Value
gene id LOC103035259
gene name LOC103035259
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35858681 ~ 35861431 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254299.3
GTGTGAtgcgatgtgtgtgtgtgttttattgggaGTGTTATCTATCATTTTCTGGAAAGCCTTCCTTCTTCCCTTCTCTTTGTCCCGCCTGTTTGTCTGTGCTGGCCTGGAGAGAGGGAGGTTACTGTATTACAGAAGGTGAGGAGGGAGGGAAAGAACTTTGTATGAAGAGAGAGGAAGTCTCAAACTAACAGTCATAGTTAACTTCTGTCCAGTTGTGAACAGAGTAGCTGCGCTACAGGACTAAATAGGTGGGCTGGGTACTGGCCGACAATTTTGGAGGGGAGAAGGAGCTGCATCTTTCAGGAAATATAAAAGTTTGGTCTGATGTAGAATAAAGGATTCATTCCGTGCTGATTTATTCCACCAGATTTTACACAGAGCAAGACTTCTAACTGTGAAAAGACTCATTTTGGGTTCCTTGAAGGGGCAGAAGGATGACTGAACCAGCAGTTATATCAAGGTCTCCTTCCAACGCATCTTCACACAAACACGAGACAACACCCCCTAGTGATGCAGATGATCAAGCATGGGATGCTAGTCCTGAATGTTCCATCTGCTTCACTTCATATGATAACACCTTCAAAACTCCCAAGATCCTGGATTGTAATCACACCTTCTGCCTGGAGTGTCTGTCCCGCTTCATCACCGTATCACCAGAAAAAGAAGGCACACAGATCACCTGCCCGCTTTGCCGACAACCAACGCCTGTGCCTGAGAATGGCCCACCAGCTCTGACCACCAGCCAGGAGGTGCTCGATCAACTCCCCAGCCACCAACAGCATGAAGAAAAAATTTGGCTGGAAGGAAAGAAACTCTGCTACGCGAACCCTATGACACCCAACTGCGTCTGCATTGATATTGGAGGAAGTAAACAAGAGATTGAGAACCAACAGGAAACAAGAGAGAGCTGTGGGAGCAGGCTGCTTCGGTTTCTGGGCTTTTATGGAAACTGGAAGAGGCTGCTGATTCTCACAGTGGTGCTCCTCATAGTGTTTGCTGTGATCCTCTGGCCCATTCAGTGCAGCTTCAGTAGGGGATTGATGCGAGGCTGCTTCAGGATGCAAACACAGAGCATGAACGTCTTCTCTACAGTTTCAACCACCACTGTTGGGTGAAGATTTCTCTCTCAAACATTTTAGTCCATCTACCACACATGATCAAACTAAATGTGAAAACACCACCTACTGGGACGACTGTGTGGGCCCTGCCTGCTATCGcaatctgcaaaaaaatgattattgttTTTGATCAATGCAGAATGCCTACTGAGACATCTCAGAAACATAGAGACAGAGGAAATCAACAGTCGTGCGAgactgaagtgaagtgaagtgaactACTGTGTTCACTGTGTTATGCCAAACCCCTTAAACACTAGTTTAAATCTTCAGCTATCAATCCTAATGCGGAAACCTTTGGGAATTGTGAAGCCCC

Function

NR:

description
RING finger protein 223-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254299.3 True 1437 mRNA 0.46 2 35858681 35861431

Neighbor

gene id symbol gene type direction distance location
c13h1orf159 cunh1orf159,LOC103036790 coding upstream 4590 35849749 ~ 35854091 (+)
kbtbd12 kbtbd12,LOC107712091,LOC107721181,LOC107673613,LOC107584421 coding upstream 14148 35839437 ~ 35844533 (+)
p4htm p4htm,LOC108440486,LOC107721183,LOC107673589,LOC107667396,LOC107584428,LOC107712096 coding upstream 29800 35820481 ~ 35828881 (+)
LOC103037527 myhb,LOC108440470,LOC108271865,LOC107721187,LOC108254796,LOC107568178,LOC107667337 coding upstream 40099 35805094 ~ 35818582 (+)
LOC103038900 arpc4,LOC103358720,LOC107568180,LOC100696600,LOC103386159 coding upstream 57508 35796279 ~ 35801173 (+)
LOC103033861 NA coding downstream 2707 35864138 ~ 35869432 (+)
ppil1 ppil1,LOC107667353 coding downstream 39792 35901223 ~ 35906018 (+)
tspo tspo,LOC107721166,LOC107568174,LOC107667354,LOC107584504 coding downstream 90610 35952041 ~ 35955542 (+)
crbn crbn,LOC107711034,LOC107748399 coding downstream 177761 36039192 ~ 36046913 (+)
LOC103026553 vhl coding downstream 186466 36047897 ~ 36050402 (+)
G115915 eif4enif1 non-coding upstream 181840 35676178 ~ 35676841 (+)
G115925 patz1 non-coding upstream 193804 35661443 ~ 35664877 (+)
G115876 LOC108271732 non-coding upstream 309134 35535980 ~ 35549547 (+)
G115874 fkbp5,LOC108271732,LOC108413698,LOC105026479 non-coding upstream 326660 35529492 ~ 35532021 (+)
G115873 NA non-coding upstream 332171 35525409 ~ 35526510 (+)
G116020 NA non-coding downstream 783 35862214 ~ 35862823 (+)
LOC111193772 NA non-coding downstream 33516 35894947 ~ 35899393 (+)
G116050 NA non-coding downstream 69493 35930924 ~ 35933206 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding downstream 128602 35990033 ~ 36000056 (+)
G116138 NA non-coding downstream 328343 36189774 ~ 36223578 (+)
G115931 NA other upstream 124322 35730379 ~ 35734359 (+)
G115917 NA other upstream 182646 35642874 ~ 35676035 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 298955 35553601 ~ 35559726 (+)
LOC103023619 cadps,LOC106953609 other upstream 495041 35290828 ~ 35363640 (+)
LOC111193767 NA other upstream 728608 35057150 ~ 35130073 (+)
tomm6 NA other downstream 97112 35958543 ~ 35967878 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other downstream 120688 35982119 ~ 35988060 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 481554 36342985 ~ 36359777 (+)
LOC103044253 LOC108440873 other downstream 795961 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 1238583 37100014 ~ 37121327 (+)

Expression


Co-expression Network