kbtbd12 (kbtbd12,LOC107712091,LOC107721181,LOC107673613,LOC107584421)


Basic Information

Item Value
gene id kbtbd12
gene name kbtbd12,LOC107712091,LOC107721181,LOC107673613,LOC107584421
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35839437 ~ 35844533 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254302.3
TAGAAAATTGCTTGTTATAAAGaagctgttttctgttttctctttcttgtttcaCCCCCATTGGCCATTTGACACATCATGGTCTATTATTAGCGATGTTGCTTAGCATGCTGCATAGAGGGGTTGAGTAAACAGATTTCTCTAGCAGTCTCTTCTCCTGCCTGTTCTGTGAGAGGcatagtgtgtttgtgtgtctgtgtgtgtgaggcgtGGGTAATGGACAGCTTGTCGCCCGGGGGCGAAGAACACAGTAGGCCAGTGATCTGATGAACTTCACATGCCATTTTGGATATATAACCTCCTGAATGTCCTAGGGCTAATGGAAGCTTTTGTCAagtttcaagattttttttaaagaaagaaacattTTCACAAAGAAGCAAAATGGATTTACGAGCAAAGCATGGTCTGGCCCTGTTGGACCAGTTAAATCGAATGCGAGAAGATAAACTGTTGACAGACGTGGTACTAGTTGCTGAAGGCATTAGTTTTCCATGTCATCGTTCTGTGCTTGCTGCATTCAGCCCTTACTTCCGTGTCATGTTCACCTGTGGCCTGCGTGAAAGTACCCACAGAGAGGTAGTTTTGAGGGACATGCCAGCACAAAGCTTAGCCCTCTTGCTGGAGTACATGTACAGCTCCAAGCTCCCACTGACCCCAGGAAATGTGCAGGGCATCTCTGTTGCGGCCTTTTTACTGCAGATGGATGATGTTTTTGGTCGCTGCCAGATGTACATGACCGAAAAAATGGATTCATCCAACTGCCTGGGAATCTATTACTATGCCCGGGACTTAGGAGCTGAGGATTTGGCTGATCAGGCTCAGCGCTACCTCCGGCAGCACTTTACTGAGGTTTGTCTGAGTGAAGAAATTTTGGATCTGGAGGCCCATCAGCTTGGAGCCCTGCTGGCTTCAGACGACCTAAATGTAACCCGGGAAGAGACCATTCTGGACATGGTGATGCGATGGGTGAGAAACAGTTCAACTGGTTCGGGCTTGGAAGGCGAAAACCGAGCCCAGCATCTGCCTGAGCTCTTGAGGAAGGTACGACTGCCACTGGTTAGTGAAAGTTATCTCAAAGAGACTATGAAACGCAACACAGCACTGCTGTCTGATGCAGAATGTCTACAGATGATGGAGGATGCGGTGGAAGCAGCAGGTATGCACCCAGATGCTCCACCCCGCCGTCTGAAGCTACGCTATGGCATGGAGACCACTGACCTGCTGCTCTGCATTGGCAATGACAGCGGAGGGATACGGTCACGCTACAGTAGTTATACAGACCGCAGCTTCTGCTATGCCCCCAACACTGGCCGCACGTTTTACATCACTTCTCCTCGCTACGGTGATGCACTAGGATATGTCTGTGCTGGTGTTGTCACTGAAGGAAATGACATAATTGTGGCAGGAGAGTTAGGAGCAAGAAGGATGgcaagagagaaggaaagaaacgTGGAAGTTTTCAAGTATAATCAGGAAGCTCAGGGAAGCTGGAAGCACCTTAGTTCAGCAGAATATCGGGATTCATATGCACTGAGTTCCCTGGGTGACAACCTGTACCTAATCGGAGGTCAAATGAAGCTAAAAAATCAGTACCTCATTACCAACAGTGTTGACCGCTGGTCCTTACAGGGTGGACCTTGGCGCAGTGCTGCCCCTCTTCCTATGCCTTTGGCCTATCACAGTGTAGTCAGGATGAAAACCTGCCTCTATGTGCTTGGGGGGCGCACCCCACAGACATACCGCACAGATGAGGAGCCTGACCGCATGAGCAACCGCCTGCTGGAGTATGAACCAGAGACCAACAAGTGGAATGAGCtctgtccaatgaaatattCCAAATATCGCTGCAGTGCAGTTGCACTGAATGGGGAAATCTACGTTATAGGTGGCATTGGTTGTGAGGGTGTGGATCGTGGGCAGTCACGTCGCTGTCTTGATGCAGTAGAGATCTACAACCCTGATGGGGATTTCTGGAGAGATGGCCCTCCCCTACCCTGGCCTCTTCTCTCATTGCGAAGCAATGCACCAAATGCCGGTGTCGTGGATGGAAAGCTATATGTCTGTGGCTACTATAAAGGAGCAGATCGCCATGATATTATTACCAAAAATATCCTGCAGCTGGACCCATTTGAGAATGAGTGGACTGTGGTGTTAAAACAGGCCATTATGCATGACAGTTACGACGTGTGTCTGGTGGCAAACCTTAACCCACGAGGACTCATGCCCCCTCCTGCTGACTTGGTGGATGAATAACAAAAATCATTCACATCTGACAACAGAAGCTTCCCTCAAGCATTGGAAATGGCGCACTTTTAAACAGGTTACAAAATAGAATCTTCTAGTCTGTATATAGAGGTTGTTTCTATTTTCACTTATTGTGCAGAATAGCTGATATTGGACATTCTGTTCTGATgtatgattttgtttttaagtaTATTGGCACTTTTGAGAATGTTTGCATTTTCTGTCAGCAGATACTCGTTTACTTGTTTAAGAACACAGTGTTTTAAGAGTCCATGCATTATATGAATGCAAGACAGAATAACACAAATTTGCACAGGTTTTAAAAAGATACAAGGAATGATGGGCATCCTAAATATTaccatcaaataaataatttattattacactgttaACAAGAGGTTTCTAAACCTTATGAAATTTGTACATTTGGGTAAATCCCTATTGgcacattacaataaatacaatatactatactactctaaatcacaaaccaaaccaaggttGTTACTCTGCAATAATTTTACTCTGTATtgaatgtaaatacagtatttctacGACTTAAGAAGTAAAGAgaaatacaaaaactaaaacctaTGGAAAACGATGTAGGAAACCCATATTTGATTAATATAATAACAGTTTTGTAAACAtgaaatttaaatgtaacaatGTTAATAAGGTTTTCTGAACACCAcacaaattataaattataaaccattaatctACTTCCATGAAACAAGACTGGATCTTTTTTGAATGGGACTTTAAATGTGGGTTTTACCTGAagcataaacatttataaattacCACATAAATCAGATGTGACCTTTCAAAAGAAAATCTTTGctcttgtttt

Function

symbol description
kbtbd12 Is expressed in myotome. Orthologous to human KBTBD12 (kelch repeat and BTB domain containing 12).

NR:

description
kelch repeat and BTB domain-containing protein 12-like

GO: NA

KEGG:

id description
K21912 KBTBD12; kelch repeat and BTB domain-containing protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254302.3 True 3103 mRNA 0.44 6 35839437 35844533

Neighbor

gene id symbol gene type direction distance location
p4htm p4htm,LOC108440486,LOC107721183,LOC107673589,LOC107667396,LOC107584428,LOC107712096 coding upstream 10556 35820481 ~ 35828881 (+)
LOC103037527 myhb,LOC108440470,LOC108271865,LOC107721187,LOC108254796,LOC107568178,LOC107667337 coding upstream 20855 35805094 ~ 35818582 (+)
LOC103038900 arpc4,LOC103358720,LOC107568180,LOC100696600,LOC103386159 coding upstream 38264 35796279 ~ 35801173 (+)
LOC103038587 LOC103038587 coding upstream 44922 35793419 ~ 35794515 (+)
rab7a rab7a,rab7,LOC102230535,LOC108254780,LOC106518505,LOC106582926 coding upstream 50071 35785042 ~ 35789366 (+)
c13h1orf159 cunh1orf159,LOC103036790 coding downstream 5216 35849749 ~ 35854091 (+)
LOC103035259 LOC103035259 coding downstream 14148 35858681 ~ 35861431 (+)
LOC103033861 NA coding downstream 19605 35864138 ~ 35869432 (+)
ppil1 ppil1,LOC107667353 coding downstream 56690 35901223 ~ 35906018 (+)
tspo tspo,LOC107721166,LOC107568174,LOC107667354,LOC107584504 coding downstream 107508 35952041 ~ 35955542 (+)
G115915 eif4enif1 non-coding upstream 162596 35676178 ~ 35676841 (+)
G115925 patz1 non-coding upstream 174560 35661443 ~ 35664877 (+)
G115876 LOC108271732 non-coding upstream 289890 35535980 ~ 35549547 (+)
G115874 fkbp5,LOC108271732,LOC108413698,LOC105026479 non-coding upstream 307416 35529492 ~ 35532021 (+)
G115873 NA non-coding upstream 312927 35525409 ~ 35526510 (+)
G116020 NA non-coding downstream 17681 35862214 ~ 35862823 (+)
LOC111193772 NA non-coding downstream 50414 35894947 ~ 35899393 (+)
G116050 NA non-coding downstream 86391 35930924 ~ 35933206 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding downstream 145500 35990033 ~ 36000056 (+)
G116138 NA non-coding downstream 345241 36189774 ~ 36223578 (+)
G115931 NA other upstream 105078 35730379 ~ 35734359 (+)
G115917 NA other upstream 163402 35642874 ~ 35676035 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 279711 35553601 ~ 35559726 (+)
LOC103023619 cadps,LOC106953609 other upstream 475797 35290828 ~ 35363640 (+)
LOC111193767 NA other upstream 709364 35057150 ~ 35130073 (+)
tomm6 NA other downstream 114010 35958543 ~ 35967878 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other downstream 137586 35982119 ~ 35988060 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 498452 36342985 ~ 36359777 (+)
LOC103044253 LOC108440873 other downstream 812859 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 1255481 37100014 ~ 37121327 (+)

Expression


Co-expression Network