LOC103038587 (LOC103038587)


Basic Information

Item Value
gene id LOC103038587
gene name LOC103038587
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35793419 ~ 35794515 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254311.3
ATCAGGCTCGCGCGGGCGTGCGGTTAAACTGAAGCGTATTGCGACAGCAGACTGAATAGACAGCACAGACTGCGCTGTAATAAGGCTTTTATAAGACCATGtctgctcaggtcgaggagacAGTCCCTGCCCCGGCTCCTGCCCCTGCTCCGACCCCCAAGAAGAAGGCAGGCGCCCCTAAAGTCAAAGCAGCGGCGAAACCCGCCTCTCCGGAgggcaaaaagaagaaaaagaagaagagcaaGGGTCCCGGAAAGTACAGCAAGCTGGTAATCGATGCCATCCGGACCCTGGGGGAGAAAAACGGCTCGTCCCTCTTCAAGATCTACAAGGAGGCGAAGAAGGTGAGCTGGTTTGACCAGCAGAATGGCCGGATGTACCTCAAGTACTCGATCCGCGCGCTGCTGCTGAACGACACGCTGGTGCAGGTGAAGGGTCTGGGCGCCAACGGGTCCTTCAAACTCAACAAGAAGAAATTCGAGACCAAGAAAACCAAGAAGAGCACCACCGCCAAGCCCGCCAAAGCGCCGAAACCAGCCAAGAAGCCTGCCAAAAAAGCCAcggagaaaaaggagaagaaaaagaaaagcgtGAAGAGCGCGAAGAAGGCGACCACCGCCCCCAAGAAGAAAACCTCCAAGCCCAAGAAAGCCCCCAAAAAGCCAGCAGCCCCTGCCAAGAAGATGACCACCAAGGCGAAGGCGCCGAAACCGAAAAAATAGACTCTTAacctctttttttccttctaaCTGCTTCAGGCTTTGGTTAAAGGCTTGTCTTACTCCCACCTGTTTCCCTTCATGCTAAGCATGTCAGCTGTATGTAAATATTgcttatatgtatatgtagagtttagagagaaagacatgactgttttttttacttaactgTAAGTCTTGTTTCTATTCTTTTgtcttgattgtttttttttttcttttgtggagCCAATTTTACATAGCTGTTGCACAGCCACGCCCACTTTTGGATTTGCTCTTCTGTGTGTATTTCAGTTCAtgctcttttattatttttgttacgtgtgtaaaatcaattaaatgtcttttttattaaatgtttcttaTAAAATCTTAAAAGAA

Function

NR:

description
histone H1x

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11275 H1_5; histone H1/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254311.3 True 1097 mRNA 0.47 1 35793419 35794515

Neighbor

gene id symbol gene type direction distance location
rab7a rab7a,rab7,LOC102230535,LOC108254780,LOC106518505,LOC106582926 coding upstream 4053 35785042 ~ 35789366 (+)
eefsec eefsec,LOC107667374,LOC107584423,LOC107568193 coding upstream 47119 35740557 ~ 35746300 (+)
rft1 rft1,LOC107584424,LOC107721169,LOC107568194,LOC107673548,LOC107712099 coding upstream 63887 35723719 ~ 35729532 (+)
sirt4 sirt4 coding upstream 71991 35717968 ~ 35721428 (+)
LOC103040678 zgc:172271,LOC108440373,LOC107721198,LOC107568196,LOC107667401 coding upstream 75556 35709280 ~ 35717863 (+)
LOC103038900 arpc4,LOC103358720,LOC107568180,LOC100696600,LOC103386159 coding downstream 1764 35796279 ~ 35801173 (+)
LOC103037527 myhb,LOC108440470,LOC108271865,LOC107721187,LOC108254796,LOC107568178,LOC107667337 coding downstream 10579 35805094 ~ 35818582 (+)
p4htm p4htm,LOC108440486,LOC107721183,LOC107673589,LOC107667396,LOC107584428,LOC107712096 coding downstream 25966 35820481 ~ 35828881 (+)
kbtbd12 kbtbd12,LOC107712091,LOC107721181,LOC107673613,LOC107584421 coding downstream 44922 35839437 ~ 35844533 (+)
c13h1orf159 cunh1orf159,LOC103036790 coding downstream 55234 35849749 ~ 35854091 (+)
G115915 eif4enif1 non-coding upstream 116578 35676178 ~ 35676841 (+)
G115925 patz1 non-coding upstream 128542 35661443 ~ 35664877 (+)
G115876 LOC108271732 non-coding upstream 243872 35535980 ~ 35549547 (+)
G115874 fkbp5,LOC108271732,LOC108413698,LOC105026479 non-coding upstream 261398 35529492 ~ 35532021 (+)
G115873 NA non-coding upstream 266909 35525409 ~ 35526510 (+)
G116020 NA non-coding downstream 67699 35862214 ~ 35862823 (+)
LOC111193772 NA non-coding downstream 100432 35894947 ~ 35899393 (+)
G116050 NA non-coding downstream 136409 35930924 ~ 35933206 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding downstream 195518 35990033 ~ 36000056 (+)
G116138 NA non-coding downstream 395259 36189774 ~ 36223578 (+)
G115931 NA other upstream 59060 35730379 ~ 35734359 (+)
G115917 NA other upstream 117384 35642874 ~ 35676035 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 233693 35553601 ~ 35559726 (+)
LOC103023619 cadps,LOC106953609 other upstream 429779 35290828 ~ 35363640 (+)
LOC111193767 NA other upstream 663346 35057150 ~ 35130073 (+)
tomm6 NA other downstream 164028 35958543 ~ 35967878 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other downstream 187604 35982119 ~ 35988060 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 548470 36342985 ~ 36359777 (+)
LOC103044253 LOC108440873 other downstream 862877 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 1305499 37100014 ~ 37121327 (+)

Expression


Co-expression Network