LOC103038900 (arpc4,LOC103358720,LOC107568180,LOC100696600,LOC103386159)


Basic Information

Item Value
gene id LOC103038900
gene name arpc4,LOC103358720,LOC107568180,LOC100696600,LOC103386159
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35796279 ~ 35801173 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254312.3
TACCTTTTCTTACTGAGATCATAGGCTTCTGGGTAATCGGACGCGGCCATTCGTGCGTATACACTCCCCTTCGTGCACTACTTCAGCGCTGTGATTTGGGACGCGGCCCGGTTGATGGTGTGTCACCCAAAGAACGCCGAGCCTCGCGGAAGCAGCTTGATGTTTCCGCCTTGTACCGCGACGCCGCTTACATCGAAATGACGGCGACTTTGCGTCCCTACCTAAATGCAGTGCGTGCTACGCTACAGGCAGCTCTCTGTCTGGAGAACTTCTCTTCGCAAGTGGTTGAGCGCCACAACAAACCTGAGGTTGAAGTAAGgaGCAGTAAGGAATTATTGCTTCAGCCTGTTGTGATTAGCAGGAATGACAAAGAGAAGGTCCTTATTGAGGGTTCCATCAACTCTGTGCGTGTCAGCATTGCAGTGAAGCAGGCTGATGAGATTGAGAAGATTCTGTGCCATAAGTTCATGCGCTTCATGATGATGAGAGCAGAGAACTTTTTCATTCTGCGGAGGAAACCTGTAGAGGGCTATGATATCAGTTTTCTCATCACTAACTTCCACACAGAGCAGATGTATAAGCACAAGTTGGTGGATTTTGTCATTCATTTCATGGAAGAGATTGACAAAGAAATTAGCGAGATGAAACTCTCAGTTAATGCAAGGGCACGAATAGTCGCTGAAGAGTTCCTCAAGAACttttAAGGAAGTGGCCCTGGATCCTCAGCAAAGTGCAAGACTCACTTCACCACAATCAACAGAAATGTGGCTGAAGGTTTTGGGCCCAGAGAGAGAAGTGAGCGAGAGAGCCAATCAGCATGGAGCACCACAAAAGGGGACCAACTGAATGGAGGGGGTGTGCCCTTTGCCACAGGACTGAATTCAGAGTATTGCAGTGAAACAAAGAGCACGGATGGAATTTAATGACAGCACTCTGATCTCTCTCTGTACTGCACAACTCTGACTCTGCTTTtcatctgcattttttttttctttcatgggCATTATGTGCATTCATATTGCTAATTTTTACTCTTATTTTGATTTGTTCTCTACAGCATTCCTGCGCCCACTGCTACTTCTTTTCATTATTCTGTTGCTGTAGCAAAGTGCTCATagtgttgcaatattttgaattCACCTCACCTTTCCTCCATGCtcatgaatattaaatattatacacaaAGCTGATATGCATAAACACGTTTTACCTCTAGCCTTGGAATATTCCGTAACTTGCAGGCAggtttttttgaaaaaaaaaaaaaaaagtcagcatTCATGAGCATAAAGGAAAGTATGCTGATATTCCAATAATGTAAAcagtttcttctttttaaaaaataaatataaatatgtaaactgTGTGCATAATGCCATTTGTTATGTTTAAGTTTAGATATAGAGCTTCACACTGGTGCACAAAAACCACACAGACCTTATTACCGCTGGACACGATTGTcaaatatgattaaataaatcTTTTCATTGATTGTATCTGTAA

Function

symbol description
arpc4 Predicted to enable actin binding activity. Predicted to act upstream of or within Arp2/3 complex-mediated actin nucleation and actin filament polymerization. Predicted to be located in actin cytoskeleton; cell projection; and cytoplasm. Predicted to be part of Arp2/3 protein complex. Orthologous to human ARPC4 (actin related protein 2/3 complex subunit 4).

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 4-like

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component

KEGG:

id description
K05755 ARPC4; actin related protein 2/3 complex, subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254312.3 True 1503 mRNA 0.42 6 35796279 35801173

Neighbor

gene id symbol gene type direction distance location
LOC103038587 LOC103038587 coding upstream 1764 35793419 ~ 35794515 (+)
rab7a rab7a,rab7,LOC102230535,LOC108254780,LOC106518505,LOC106582926 coding upstream 6913 35785042 ~ 35789366 (+)
eefsec eefsec,LOC107667374,LOC107584423,LOC107568193 coding upstream 49979 35740557 ~ 35746300 (+)
rft1 rft1,LOC107584424,LOC107721169,LOC107568194,LOC107673548,LOC107712099 coding upstream 66747 35723719 ~ 35729532 (+)
sirt4 sirt4 coding upstream 74851 35717968 ~ 35721428 (+)
LOC103037527 myhb,LOC108440470,LOC108271865,LOC107721187,LOC108254796,LOC107568178,LOC107667337 coding downstream 3921 35805094 ~ 35818582 (+)
p4htm p4htm,LOC108440486,LOC107721183,LOC107673589,LOC107667396,LOC107584428,LOC107712096 coding downstream 19308 35820481 ~ 35828881 (+)
kbtbd12 kbtbd12,LOC107712091,LOC107721181,LOC107673613,LOC107584421 coding downstream 38264 35839437 ~ 35844533 (+)
c13h1orf159 cunh1orf159,LOC103036790 coding downstream 48576 35849749 ~ 35854091 (+)
LOC103035259 LOC103035259 coding downstream 57508 35858681 ~ 35861431 (+)
G115915 eif4enif1 non-coding upstream 119438 35676178 ~ 35676841 (+)
G115925 patz1 non-coding upstream 131402 35661443 ~ 35664877 (+)
G115876 LOC108271732 non-coding upstream 246732 35535980 ~ 35549547 (+)
G115874 fkbp5,LOC108271732,LOC108413698,LOC105026479 non-coding upstream 264258 35529492 ~ 35532021 (+)
G115873 NA non-coding upstream 269769 35525409 ~ 35526510 (+)
G116020 NA non-coding downstream 61041 35862214 ~ 35862823 (+)
LOC111193772 NA non-coding downstream 93774 35894947 ~ 35899393 (+)
G116050 NA non-coding downstream 129751 35930924 ~ 35933206 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding downstream 188860 35990033 ~ 36000056 (+)
G116138 NA non-coding downstream 388601 36189774 ~ 36223578 (+)
G115931 NA other upstream 61920 35730379 ~ 35734359 (+)
G115917 NA other upstream 120244 35642874 ~ 35676035 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 236553 35553601 ~ 35559726 (+)
LOC103023619 cadps,LOC106953609 other upstream 432639 35290828 ~ 35363640 (+)
LOC111193767 NA other upstream 666206 35057150 ~ 35130073 (+)
tomm6 NA other downstream 157370 35958543 ~ 35967878 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other downstream 180946 35982119 ~ 35988060 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 541812 36342985 ~ 36359777 (+)
LOC103044253 LOC108440873 other downstream 856219 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 1298841 37100014 ~ 37121327 (+)

Expression


Co-expression Network