eefsec (eefsec,LOC107667374,LOC107584423,LOC107568193)


Basic Information

Item Value
gene id eefsec
gene name eefsec,LOC107667374,LOC107584423,LOC107568193
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35740557 ~ 35746300 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254315.3
AAGAACGTTAGCTGGCCCTTTCCGTTGGTGGGCGAGTTTAAAGATCCGTCTAGAAAcagaagctaagctaactataACTGTGCGCTGcgtgctttagctagctaacgtaaGATGTTTCACTGCAGGTTAACTTaagttatatataaattttctttaatttttttattattattttataaatgttggggattctgcattgttttttgtcttacatcatattttagttttagcatCGTTTGAATTTATCTAAGTCCTCAGTCAAGATGTTTTTGCATAAAAGTGCAGTCTTGTGGATTTATACGTAGCTAAACAGAGCTATCTTGTTTTTggtactattttattttatttacttacttgtattatattataacttTACTTGCAGTAGGTCAGCAGCAGCTCATATAGCTTAGCTAGTCAGCTAGCTAACACTATCCACTACCTACGTTTGGGTCCCATTCCCTGAGACATGTTCCGTAGGTGGAGGTAGTGTTTTTTAGGCGACGCAGGAAGTGTAGTTAGCGTATCTGTCAAACGATATGATATGGCGCACTGTCTGTATAGGAGGGAGTTGATTCGAGTTGGTTCAGTTTGAAATTACTCGTTTTTGACATCTGAGAGGTGCTTGAGTTAAACTGCATCCAGCTAACTTACAAGATCTGTGTTTTTCAGCagcacaacttttttttggtgtgaATTAAGCTGAAAGTGCACAGTCATCTTAGATCAAAGTCCACTGCTTCCCTATTGTGTCTCGTTCGGATCCTGTCTTTAATTCTTCCACACATGGCAGATCCGAGCGCTAACGCTGGGGACGGCCTCCTCCCCCAGATTCTGAACTTTAATGTGGGTGTCCTGGGCCATGTGGACAGCGGGAAGACGTCTCTAGCCAGGGCTCTGAGCAGCACCGCCTCCACCGCTGCCTTCGACAAGAACCCGCAGTCCAAAGAGAGAGGCATCACCCTGGATCTGGGCTTTAGCGCCTTCACCGTCCCTTTACCGTACCACCTTAGAGAGGCCTGCGGGGAGAGAGCGTACCACAGCCTGCAGTTCACACTGGTGGACTGTCCGGGGCATGCCTCACTCATACGGACCATAATTGGAGgtgCTCAGATTATTGATCTGATGCTGTTAGTGGTTGATGTGGTAAAGGGCATGCAGACACAGACTGCAGAGTGTCTCCTGATTGGTCAGCTCACCTGCTCCAGGATGATTGTCATTCTTAATAAAATTGACCTGTTGCCTAGTGACAAGAAACAGAGTGCCATCGATAAGATGACAAAGAGGATGCACAAAACTTtggagaacacaagGTTTAAAGGTTGCCCTGTCATTGCTGTGGCAGCAAAGCCAGGGGGTCCGGATGCTCCAGACACAGAGGAAGGACAGGGAATTACTGAGCTTATAGAGttgCTAAAGACTCAGGCTTTCCTGCCTAAGAGAGATCCATCTGGTTCCCTGCTTATGGCTGTGGATCACTGTTTCTCCATCCGTGGACAGGGAACAGTCATTACAGGCACCATTCTACAGGGGGCGCTGCGCGTCAATGACACACTGGAGATACCTGCACTTAAGGTCACCCGGAAGGTGAGGTCAGTACAGATGTTTCGTAAGCCAGTTCCTAGTGCGATACAAGGAGACcgggttggtgtgtgtgtgacacagtTTGACCCAAAACTGCTGGAACGTGGTGTGGTGTGCACACCTGGCTCCCTGCGAACTCTTTATGCTGCCATAATTTCTGTGCATAAGATTGAATACTACCGTGGTGCACTTAGCAGCCGTTCAAAGTTCCACATCACCGTTGGACATGGAACAGTCATGGCACGTGTGTCATTCTTCAGTAGGGTGTCTCGCAGCATCCCGTCTGGAGCCTCAGATGGAAGTCCCTCAGAGCAGGGCATGGACTCTTTCTCCTTTGAGTGGGAGTTTCATCACCAGGAGGAGTTTTTGAGCAGTCCGGGAGAAACTGAGGGGAAGGAACCACAGCAGTGGGCGTTACTGGAGTTTGAGCAGCCAGTAACATGTCCACCACTTTCTTTGGTGATTGGCTCACGGCTGGACTCTGACATACACGCTAACACATGTAGGCTTGCATTTCATGGAAAGCTTTTGGAGGGCTTTGAGGACAAGAACTACACAGAGACTACATTACcgaaactcaaaataagcaaagACAAGCATAAAGAGGGAGCAGTGGAACGGGTGATGGACGACTACACTGTGATTGGCAGAAACCTGTTTAAAAAGGAGACCAACCTTCAGCTATTTGTGGGATTAAAGGTCACACTTTCATCAGGAGAAACGGGGATCATCGAAGGCAGCTTTGGTCAGAGTGGGAAAATCAAAATTAGAGTGCCAGAGGGattaaaagaagaaacaaagCAGCTACTTTCCTCTTCctccaagaaaaaaggaaagggtGGGACTAAAAATGAACCAGCAAAAGAGGAAGAAGCCAAGATCAACTCTCAGCCAATCGCCATCCATCTGAACTTTAAAAGATATGTCTATGACCCCCATAAAAAGATGGTGCAGTCCTGACTTACAGGACTAACTGTTACAGAATAAGAGAAGGAAGCTGATGTTTAAGTAAAGTCTTGTTGGTTGTCTGAGGTATTGAGTGCATGGATGTCAAAGGGTTGTAAGAAGCTCTCTGGGGGTTTGGTTGCTTGGtttgtattctattttttgGCACAATTTTCTCGTGATAAAATGCTCAACCCTGGAAATAAAGACATCTGCATGTGAA

Function

symbol description
eefsec Predicted to enable translation elongation factor activity. Predicted to be involved in selenocysteine incorporation. Predicted to act upstream of or within translation. Orthologous to human EEFSEC (eukaryotic elongation factor, selenocysteine-tRNA specific).

NR:

description
selenocysteine-specific elongation factor

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03833 selB, EEFSEC; selenocysteine-specific elongation factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254315.3 True 2749 mRNA 0.46 7 35740557 35746300

Neighbor

gene id symbol gene type direction distance location
rft1 rft1,LOC107584424,LOC107721169,LOC107568194,LOC107673548,LOC107712099 coding upstream 11025 35723719 ~ 35729532 (+)
sirt4 sirt4 coding upstream 19129 35717968 ~ 35721428 (+)
LOC103040678 zgc:172271,LOC108440373,LOC107721198,LOC107568196,LOC107667401 coding upstream 22694 35709280 ~ 35717863 (+)
sfi1 NA coding upstream 31368 35687626 ~ 35709189 (+)
LOC103043339 LOC108440316,LOC108271728 coding upstream 79432 35648837 ~ 35661125 (+)
rab7a rab7a,rab7,LOC102230535,LOC108254780,LOC106518505,LOC106582926 coding downstream 38742 35785042 ~ 35789366 (+)
LOC103038587 LOC103038587 coding downstream 47119 35793419 ~ 35794515 (+)
LOC103038900 arpc4,LOC103358720,LOC107568180,LOC100696600,LOC103386159 coding downstream 49979 35796279 ~ 35801173 (+)
LOC103037527 myhb,LOC108440470,LOC108271865,LOC107721187,LOC108254796,LOC107568178,LOC107667337 coding downstream 58794 35805094 ~ 35818582 (+)
p4htm p4htm,LOC108440486,LOC107721183,LOC107673589,LOC107667396,LOC107584428,LOC107712096 coding downstream 74181 35820481 ~ 35828881 (+)
G115915 eif4enif1 non-coding upstream 63716 35676178 ~ 35676841 (+)
G115925 patz1 non-coding upstream 75680 35661443 ~ 35664877 (+)
G115876 LOC108271732 non-coding upstream 191010 35535980 ~ 35549547 (+)
G115874 fkbp5,LOC108271732,LOC108413698,LOC105026479 non-coding upstream 208536 35529492 ~ 35532021 (+)
G115873 NA non-coding upstream 214047 35525409 ~ 35526510 (+)
G116020 NA non-coding downstream 115914 35862214 ~ 35862823 (+)
LOC111193772 NA non-coding downstream 148647 35894947 ~ 35899393 (+)
G116050 NA non-coding downstream 184624 35930924 ~ 35933206 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding downstream 243733 35990033 ~ 36000056 (+)
G116138 NA non-coding downstream 443474 36189774 ~ 36223578 (+)
G115931 NA other upstream 6198 35730379 ~ 35734359 (+)
G115917 NA other upstream 64522 35642874 ~ 35676035 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 180831 35553601 ~ 35559726 (+)
LOC103023619 cadps,LOC106953609 other upstream 376917 35290828 ~ 35363640 (+)
LOC111193767 NA other upstream 610484 35057150 ~ 35130073 (+)
tomm6 NA other downstream 212243 35958543 ~ 35967878 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other downstream 235819 35982119 ~ 35988060 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 596685 36342985 ~ 36359777 (+)
LOC103044253 LOC108440873 other downstream 911092 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 1353714 37100014 ~ 37121327 (+)

Expression


Co-expression Network