LOC103043339 (LOC108440316,LOC108271728)


Basic Information

Item Value
gene id LOC103043339
gene name LOC108440316,LOC108271728
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35648837 ~ 35661125 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254329.3
AACTAAGCTGGACTTCTAGGAACTATTGAAGGCCAGTGTGAAGACTACTTATAAATGTCATTTCTACCACTTGGTGATGGAGTTTATGATCAACAGCAAGGCTACTTATTACACTGTATCACAAACCTAACCCTGcatgctctctcgctctctctccacatccctcgctctctcttttacccactctcactctcacacacacacacatacacacacagcctttCACAGAGTCAGGTTGCAGTCCTGGATCTGCCCTCagcttgttcttgttcttggtTCTTTTTCTTGTTCCAGAAAGTCCTGGTCAGTTCAGCATGATCTCACAGGGGCAGGAAAGTGTCAGGAAAGAGAAGtacatTCAGAACTTTATAAATGAGACGTTTCAGGAGCGTTGGGCAATACAGTTAGAGGTGTATGAGATCACACTTATATGGACCTTTATAGTCTCTATCTTCTCGCTGGGTGGCCTTACAGGGGCCTTGTTGGCTGGGCCCATGTCCATCCACTTTGGCAGGAAGAAGACTATGTTGCTTAATAACATATTTCTAATGTCAAGTGCACTGCTGGCAGTGACAAGTCGAGAAGCTCGCTCTTTTGAGATGATTATTATTTCGAGATTCCTCGTTGGCATCAATGCAGGTGTCAGTATGAATGTGCAGCCAATGTATTTTGGTGAAAGTGCACCAAAGCACCTACGAGGCGCTGTGTCGCTGTCCTCTGCTGTCTTTACCTCTTTTGGATTGGTTGTGGGACAAGTTGTTGGTCTCAGGGAACTGTTGGGTTGTGAGTCATGCTGGCCGTACCTGTTAGCCAGTAACGCTGTGCCTGGCTTTATCCAGCTTCTCACACTGCCATGGTTTCCAGAGAGCCCCCGGTACCTTCTCATCGACCGTGGAGACAAGAATGCCTGCCTAAAGGCCCTAAAGCAGCTGCGGGGCTGTGAGGTTGAGAGAGCTGAGCTGGATGAGATGCTGCAGGAGAAGGCGGAGGCTGAAGGCCTGAGAGCTCGGCAGCCCTGGGAGCTCTTCACCGACCGCAGCATTCGCTGGCAACTCATCTCCGTCGCAGTGCTGAGCAGTGCCATGCAGCTGTGTGGTAACGACTCGATTTACTTCTATGCATTCTATATATTTCAACAAGCTGGTTTATCTGCTGAGCACATCCAGTATGTGACTATTGGCACTGGCACATGTGAATTCACTGCCTGCATTCTGAGTaacCTACTTATAGAACGTCAAGGCAGAAAAGTGCTTTTGATGGGAGGCTACGCACTTATGACAGGCTGGGCTGTAGTCTTTACTGTGGCACTTTCATTTCAGaatttagTGCACTGGATGCCTTTCATGAGCATGGGCTGTGTGTTCACCTATATCCTCAGCTTTGGGATGGGGCCAGCTGGAGTGACTGGAGTTCTCCCTACAGAGATTTTTAACCAGACAACCCGGCCTGCTGCCTACATGATTGCTGGTTCCTTAATGTGGCTCAATCTCTTCATTATTGGAATGATATTCCCTTTCCTTGTGAGTGGACTGGGCCAGTTCTGCTTTCTGCCGTTTGGCACTGTCTGCCTCATCACTACATTGTTTATTGGATTTGTTCTACCAGAGACTAAAGGAAAGACGCTGTCCATGATCTCAAATGAGTTCAACAAGCTTAATTTCCGTCAAAAGGagacaacagaaaacaaaagaaaacaggcTCACTACCAGCTGGGTGAAGTCTGTCATTCTACAGCCTTATAGATGTTCCACATATACATCTAAGAATTCTTGAATATTTATCAAAATGTTTGCACTTTTCTGCTGGAGAATAAGAGAGCATCAAACATGGTCACATACAGAGCTCAAAGGTAATCCTGGGAAaactctcattattttaaatttgatactCTTGTGGAAGCTGTGCTCTactgaacaatattatactgtattataagtTAGCAGTCAATACTGTTAAGTCCAGCTAAACAACAGTAAACTTGAGAACTAActtctaaattaaaaatagctTATAGAGAGTTAATCTGTTTTGGCAAATTAactatacagacacacacagccacacacatgCAGTGACACTAAACTTGGTGGTGGCATGTcaatgtgtgttgtgctgtgtaaGAATAATTGCACTTGTTTAAACAATGTATTGCAGTAGTGGCAAAAGCAGGACATACACAAAAACATTGCCTAttctgaaaaaatgaaaaaaaaaaaaaacagcaggtcTGGCTGACAGTCAGTTGAGCAACTTACACCATGCCTTAAAGGACTTCAAGCTGTAAAGCTGTTGTTcttaaaaaagaacagaactGAACACAAGCATACACGATATTAAATACTAACCTGAATAAAgacactttttaataaatagttttaaCTGTTTAAGTTATAAACCTGCTTGTTACGCTGATTATTCTAAATTTAACAGACACAACTAAATAAGTAATAGTTTTAGTGTGTgcaataataaactaaacatttacAGAGTGTACCTAGACtacttttaaaaacagtaaaccTTCAATGTTGGCAACAGTAAGTGTTGGGTTTTGAGGGAATCTCTAAAGATGAGGTGTAAAATTATTTAAGATATACAAATGAATGTTTTTGCATCTGTTTGAAGGGAACACAAATGCTTAAAAGTGTTCTTAATGTGTGGTGTTCTGTTTTGAGgtatcttgttttgtttttgggtaTGCTTTTCTACaagcatttattttctattacattttacaagtgtttattttctacagacatttttttttcaaaggatTTTGTTTCTAATACAATTCTAGTCTACTATTATGGAGTATTGTTTGACATGTTGCTTGTAACACTTTTGCATTAAAATGATGCAAACTGTAACTCCTGGCCTGGTGATCA
>XM_015607117.2
TTCGTTGGGTGTAAGGTCGACATTAGCATTTCTGAATCCACATACCACTTGGAATGATTGCCCATTCATGTTCATGTTTTAGCATTCCCCTAACAACGTCACACCAACTACCTTGGATGCCAAACCAACGCCTGAAGTTTTCTTAGTTTCTTTAGAACCTGTAGTCCACCAGGAGTCCACCAGGAGTTCACCTCTGCATGGGGCTCTGCAAGAACAAATCACAAGGCTGGGCCTGGAGACAGCCTCTGACGTCAGTAAAAAAGTCCTGGTCAGTTCAGCATGATCTCACAGGGGCAGGAAAGTGTCAGGAAAGAGAAGggCCTTACTCTTACTCTGGCTTTAATGGTAGCCTCTGCTGCCGTTGGGGGGACAGTGCAATATGGCTATAACCTTGCCATTATGAATGCACCTACTGTTtacatTCAGAACTTTATAAATGAGACGTTTCAGGAGCGTTGGGCAATACAGTTAGAGGTGTATGAGATCACACTTATATGGACCTTTATAGTCTCTATCTTCTCGCTGGGTGGCCTTACAGGGGCCTTGTTGGCTGGGCCCATGTCCATCCACTTTGGCAGGAAGAAGACTATGTTGCTTAATAACATATTTCTAATGTCAAGTGCACTGCTGGCAGTGACAAGTCGAGAAGCTCGCTCTTTTGAGATGATTATTATTTCGAGATTCCTCGTTGGCATCAATGCAGGTGTCAGTATGAATGTGCAGCCAATGTATTTTGGTGAAAGTGCACCAAAGCACCTACGAGGCGCTGTGTCGCTGTCCTCTGCTGTCTTTACCTCTTTTGGATTGGTTGTGGGACAAGTTGTTGGTCTCAGGGAACTGTTGGGTTGTGAGTCATGCTGGCCGTACCTGTTAGCCAGTAACGCTGTGCCTGGCTTTATCCAGCTTCTCACACTGCCATGGTTTCCAGAGAGCCCCCGGTACCTTCTCATCGACCGTGGAGACAAGAATGCCTGCCTAAAGGCCCTAAAGCAGCTGCGGGGCTGTGAGGTTGAGAGAGCTGAGCTGGATGAGATGCTGCAGGAGAAGGCGGAGGCTGAAGGCCTGAGAGCTCGGCAGCCCTGGGAGCTCTTCACCGACCGCAGCATTCGCTGGCAACTCATCTCCGTCGCAGTGCTGAGCAGTGCCATGCAGCTGTGTGGTAACGACTCGATTTACTTCTATGCATTCTATATATTTCAACAAGCTGGTTTATCTGCTGAGCACATCCAGTATGTGACTATTGGCACTGGCACATGTGAATTCACTGCCTGCATTCTGAGTaacCTACTTATAGAACGTCAAGGCAGAAAAGTGCTTTTGATGGGAGGCTACGCACTTATGACAGGCTGGGCTGTAGTCTTTACTGTGGCACTTTCATTTCAGaatttagTGCACTGGATGCCTTTCATGAGCATGGGCTGTGTGTTCACCTATATCCTCAGCTTTGGGATGGGGCCAGCTGGAGTGACTGGAGTTCTCCCTACAGAGATTTTTAACCAGACAACCCGGCCTGCTGCCTACATGATTGCTGGTTCCTTAATGTGGCTCAATCTCTTCATTATTGGAATGATATTCCCTTTCCTTGTGAGTGGACTGGGCCAGTTCTGCTTTCTGCCGTTTGGCACTGTCTGCCTCATCACTACATTGTTTATTGGATTTGTTCTACCAGAGACTAAAGGAAAGACGCTGTCCATGATCTCAAATGAGTTCAACAAGCTTAATTTCCGTCAAAAGGagacaacagaaaacaaaagaaaacaggcTCACTACCAGCTGGGTGAAGTCTGTCATTCTACAGCCTTATAGATGTTCCACATATACATCTAAGAATTCTTGAATATTTATCAAAATGTTTGCACTTTTCTGCTGGAGAATAAGAGAGCATCAAACATGGTCACATACAGAGCTCAAAGGTAATCCTGGGAAaactctcattattttaaatttgatactCTTGTGGAAGCTGTGCTCTactgaacaatattatactgtattataagtTAGCAGTCAATACTGTTAAGTCCAGCTAAACAACAGTAAACTTGAGAACTAActtctaaattaaaaatagctTATAGAGAGTTAATCTGTTTTGGCAAATTAactatacagacacacacagccacacacatgCAGTGACACTAAACTTGGTGGTGGCATGTcaatgtgtgttgtgctgtgtaaGAATAATTGCACTTGTTTAAACAATGTATTGCAGTAGTGGCAAAAGCAGGACATACACAAAAACATTGCCTAttctgaaaaaatgaaaaaaaaaaaaaacagcaggtcTGGCTGACAGTCAGTTGAGCAACTTACACCATGCCTTAAAGGACTTCAAGCTGTAAAGCTGTTGTTcttaaaaaagaacagaactGAACACAAGCATACACGATATTAAATACTAACCTGAATAAAgacactttttaataaatagttttaaCTGTTTAAGTTATAAACCTGCTTGTTACGCTGATTATTCTAAATTTAACAGACACAACTAAATAAGTAATAGTTTTAGTGTGTgcaataataaactaaacatttacAGAGTGTACCTAGACtacttttaaaaacagtaaaccTTCAATGTTGGCAACAGTAAGTGTTGGGTTTTGAGGGAATCTCTAAAGATGAGGTGTAAAATTATTTAAGATATACAAATGAATGTTTTTGCATCTGTTTGAAGGGAACACAAATGCTTAAAAGTGTTCTTAATGTGTGGTGTTCTGTTTTGAGgtatcttgttttgtttttgggtaTGCTTTTCTACaagcatttattttctattacattttacaagtgtttattttctacagacatttttttttcaaaggatTTTGTTTCTAATACAATTCTAGTCTACTATTATGGAGTATTGTTTGACATGTTGCTTGTAACACTTTTGCATTAAAATGATGCAAACTGTAACTCCTGGCCTGGTGATCA

Function

NR:

description
PREDICTED: solute carrier family 2, facilitated glucose transporter member 11-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0008643 carbohydrate transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08148 SLC2A11, GLUT11; MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254329.3 False 2885 mRNA 0.41 11 35651335 35661125
XM_015607117.2 True 2949 mRNA 0.42 14 35648837 35661125

Neighbor

gene id symbol gene type direction distance location
hdhd3 hdhd3 coding upstream 23629 35621652 ~ 35625208 (+)
trub2 trub2 coding upstream 28764 35616324 ~ 35620073 (+)
LOC103046487 NA coding upstream 54602 35582423 ~ 35594235 (+)
LOC103021651 slc6a13,LOC108413697,LOC107567077,LOC107721195,LOC107584422,LOC108271735 coding upstream 124922 35503056 ~ 35523915 (+)
LOC103022280 LOC103022280,LOC108436247,LOC108271634 coding upstream 177632 35462800 ~ 35471205 (+)
sfi1 NA coding downstream 26501 35687626 ~ 35709189 (+)
LOC103040678 zgc:172271,LOC108440373,LOC107721198,LOC107568196,LOC107667401 coding downstream 48155 35709280 ~ 35717863 (+)
sirt4 sirt4 coding downstream 56843 35717968 ~ 35721428 (+)
rft1 rft1,LOC107584424,LOC107721169,LOC107568194,LOC107673548,LOC107712099 coding downstream 62594 35723719 ~ 35729532 (+)
eefsec eefsec,LOC107667374,LOC107584423,LOC107568193 coding downstream 79432 35740557 ~ 35746300 (+)
G115876 LOC108271732 non-coding upstream 99290 35535980 ~ 35549547 (+)
G115874 fkbp5,LOC108271732,LOC108413698,LOC105026479 non-coding upstream 116816 35529492 ~ 35532021 (+)
G115873 NA non-coding upstream 122327 35525409 ~ 35526510 (+)
LOC111193769 NA non-coding upstream 123748 35524334 ~ 35525089 (+)
G115861 LOC108436256,LOC107750275 non-coding upstream 165082 35480195 ~ 35483755 (+)
G115925 patz1 non-coding downstream 318 35661443 ~ 35664877 (+)
G115915 eif4enif1 non-coding downstream 15053 35676178 ~ 35676841 (+)
G116020 NA non-coding downstream 201089 35862214 ~ 35862823 (+)
LOC111193772 NA non-coding downstream 233822 35894947 ~ 35899393 (+)
G116050 NA non-coding downstream 269799 35930924 ~ 35933206 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 89111 35553601 ~ 35559726 (+)
LOC103023619 cadps,LOC106953609 other upstream 285197 35290828 ~ 35363640 (+)
LOC111193767 NA other upstream 518764 35057150 ~ 35130073 (+)
G115736 NA other upstream 639895 34920701 ~ 35008942 (+)
LOC103038162 NA other upstream 1256878 34380297 ~ 34391959 (+)
G115931 NA other downstream 69254 35730379 ~ 35734359 (+)
tomm6 NA other downstream 297418 35958543 ~ 35967878 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other downstream 320994 35982119 ~ 35988060 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 681860 36342985 ~ 36359777 (+)
LOC103044253 LOC108440873 other downstream 996267 36657392 ~ 36713884 (+)

Expression


Co-expression Network