LOC103045376 (LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402)


Basic Information

Item Value
gene id LOC103045376
gene name LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35553601 ~ 35559726 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254336.3
TCCTATCAGCTGACCCAACTATATGCAAATTAagtgagctagctagcattcTAGCCAGCCTGTTCTAGAGGTGCGTGTTTAGCTGCGGTTTGCTGCACAACAGACCTGCGTCTAGAGGGAAAACCGAaattGTATTTCTGTGAAGCTGAGATTCCTTAAGGCTACACATCGGAAATGGGAGATCCTTCCCTAAGTCGAGACTGCCCAATAGACTGTAAGGTTTATGTGGGTAATCTAGGCAACAGTGGGGATAAGACTGAGCTGGAGAGGGCTTTTGGCTATTATGGCCCTTTGCGAAGTGTGTGGGTGGCTAGGAACCCTCCTGGTTTTGCGTTTGTGGAGTTCGAGGACCACAGAGATGCTGCAGATGCTGTCCGGGAGTTGGATGGAAGGACCCTTTGTGGATGTCGTGTGCGAGTTGAGATGTCTAGTGGAGAGAAACGGTCAAGGAATCGTGGACCGCCACCCTCTTGGGGTCGACGCCCGAGAGATGACTACAGGCGCCGGAGCCCACCCCCTAGACGCAGATCACCCAGGAGGAGGAGTTTTAGCCGCAGTCGCAGCAGGTCTTTTTCCAGAGAAAGGAGAAGGGACAGGTCTCTGTCTCGAGATAGAAATCACAAACCTTCAAGATCTTTCTCAAGATCACAAAGTCGTTCCCGTTCTAACGACCGGAGGTAAGATGCCTCTGAAGTCTGACTTTTGGAAAAGTTGGTTGTGTCCTTCAGACAAAGGCCACTGATTATGGATgtctgttctttttcttcttaaacAAGATTGGGCCTTTTTAGTATGTTATTTTTGGTTTTCCATCACATcgtacccttttttttttttttttccccttgttGACTGATGGCAAATTTCAAtgtcgttttttttctttctttcatctttTAAACAAAGTAAAGTTCTGTAGATGGCCATAACTCCTAAATTAGGTGTAAAACCTGGCTGAACTTTAGTCTCTTCTGTTTTTCccttctttttaataaaatgatgaaaatgt
>XM_007254337.3
TATATGCAAATTAagtgagctagctagcattcTAGCCAGCCTGTTCTAGAGGTGCGTGTTTAGCTGCGGTTTGCTGCACAACAGACCTGCGTCTAGAGGGAAAACCGAGTAGaattGTATTTCTGTGAAGCTGAGATTCCTTAAGGCTACACATCGGAAATGGGAGATCCTTCCCTAAGTCGAGACTGCCCAATAGACTGTAAGGTTTATGTGGGTAATCTAGGCAACAGTGGGGATAAGACTGAGCTGGAGAGGGCTTTTGGCTATTATGGCCCTTTGCGAAGTGTGTGGGTGGCTAGGAACCCTCCTGGTTTTGCGTTTGTGGAGTTCGAGGACCACAGAGATGCTGCAGATGCTGTCCGGGAGTTGGATGGAAGGACCCTTTGTGGATGTCGTGTGCGAGTTGAGATGTCTAGTGGAGAGAAACGGTCAAGGAATCGTGGACCGCCACCCTCTTGGGGTCGACGCCCGAGAGATGACTACAGGCGCCGGAGCCCACCCCCTAGACGCAGATCACCCAGGAGGAGGAGTTTTAGCCGCAGTCGCAGCAGGTCTTTTTCCAGAGAAAGGAGAAGGGACAGGTCTCTGTCTCGAGATAGAAATCACAAACCTTCAAGATCTTTCTCAAGATCACAAAGTCGTTCCCGTTCTAACGACCGGAGGTAAGATGCCTCTGAAGTCTGACTTTTGGAAAAGTTGGTTGTGTCCTTCAGACAAAGGCCACTGATTATGGATgtctgttctttttcttcttaaacAAGATTGGGCCTTTTTAGTATGTTATTTTTGGTTTTCCATCACATcgtacccttttttttttttttttccccttgttGACTGATGGCAAATTTCAAtgtcgttttttttctttctttcatctttTAAACAAAGTAAAGTTCTGTAGATGGCCATAACTCCTAAATTAGGTGTAAAACCTGGCTGAACTTTAGTCTCTTCTGTTTTTCccttctttttaataaaatgatgaaaatgt
>XM_007254338.2
TACTAAAACACAGAGGAGGCGGCGGGCTGGATCACATCACCCTGTGCGTTAAACAACACCCTTTTAAATTAGaattGTATTTCTGTGAAGCTGAGATTCCTTAAGGCTACACATCGGAAATGGGAGATCCTTCCCTAAGTCGAGACTGCCCAATAGACTGTAAGGTTTATGTGGGTAATCTAGGCAACAGTGGGGATAAGACTGAGCTGGAGAGGGCTTTTGGCTATTATGGCCCTTTGCGAAGTGTGTGGGTGGCTAGGAACCCTCCTGGTTTTGCGTTTGTGGAGTTCGAGGACCACAGAGATGCTGCAGATGCTGTCCGGGAGTTGGATGGAAGGACCCTTTGTGGATGTCGTGTGCGAGTTGAGATGTCTAGTGGAGAGAAACGGTCAAGGAATCGTGGACCGCCACCCTCTTGGGGTCGACGCCCGAGAGATGACTACAGGCGCCGGAGCCCACCCCCTAGACGCAGATCACCCAGGAGGAGGAGTTTTAGCCGCAGTCGCAGCAGGTCTTTTTCCAGAGAAAGGAGAAGGGACAGGTCTCTGTCTCGAGATAGAAATCACAAACCTTCAAGATCTTTCTCAAGATCACAAAGTCGTTCCCGTTCTAACGACCGGAGGTAAGATGCCTCTGAAGTCTGACTTTTGGAAAAGTTGGTTGTGTCCTTCAGACAAAGGCCACTGATTATGGATgtctgttctttttcttcttaaacAAGATTGGGCCTTTTTAGTATGTTATTTTTGGTTTTCCATCACATcgtacccttttttttttttttttccccttgttGACTGATGGCAAATTTCAAtgtcgttttttttctttctttcatctttTAAACAAAGTAAAGTTCTGTAGATGGCCATAACTCCTAAATTAGGTGTAAAACCTGGCTGAACTTTAGTCTCTTCTGTTTTTCccttctttttaataaaatgatgaaaatgt
>XM_022675724.1
AGTACTAAAACACAGAGGAGGCGGCGGGCTGGATCACATCACCCTGTGCGTTAAACAACACCCTTTTAAATTAGGTATGGTAATGCAATTGGAATAACGaattGTATTTCTGTGAAGCTGAGATTCCTTAAGGCTACACATCGGAAATGGGAGATCCTTCCCTAAGTCGAGACTGCCCAATAGACTGTAAGGTTTATGTGGGTAATCTAGGCAACAGTGGGGATAAGACTGAGCTGGAGAGGGCTTTTGGCTATTATGGCCCTTTGCGAAGTGTGTGGGTGGCTAGGAACCCTCCTGGTTTTGCGTTTGTGGAGTTCGAGGACCACAGAGATGCTGCAGATGCTGTCCGGGAGTTGGATGGAAGGACCCTTTGTGGATGTCGTGTGCGAGTTGAGATGTCTAGTGGAGAGAAACGGTCAAGGAATCGTGGACCGCCACCCTCTTGGGGTCGACGCCCGAGAGATGACTACAGGCGCCGGAGCCCACCCCCTAGACGCAGATCACCCAGGAGGAGGAGTTTTAGCCGCAGTCGCAGCAGGTCTTTTTCCAGAGAAAGGAGAAGGGACAGGTCTCTGTCTCGAGATAGAAATCACAAACCTTCAAGATCTTTCTCAAGATCACAAAGTCGTTCCCGTTCTAACGACCGGAGGTAAGATGCCTCTGAAGTCTGACTTTTGGAAAAGTTGGTTGTGTCCTTCAGACAAAGGCCACTGATTATGGATgtctgttctttttcttcttaaacAAGATTGGGCCTTTTTAGTATGTTATTTTTGGTTTTCCATCACATcgtacccttttttttttttttttccccttgttGACTGATGGCAAATTTCAAtgtcgttttttttctttctttcatctttTAAACAAAGTAAAGTTCTGTAGATGGCCATAACTCCTAAATTAGGTGTAAAACCTGGCTGAACTTTAGTCTCTTCTGTTTTTCccttctttttaataaaatgatgaaaatgt
>XR_002650711.1
TATATGCAAATTAagtgagctagctagcattcTAGCCAGCCTGTTCTAGAGGTGCGTGTTTAGCTGCGGTTTGCTGCACAACAGACCTGCGTCTAGAGGGAAAACCGAGTAGaattGTATTTCTGTGAAGCTGAGATTCCTTAAGGCTACACATCGGAAATGGGAGATCCTTCCCTAAGTCGAGACTGCCCAATAGACTGTAAGGTTTATGTGGGTAATCTAGGCAACAGTGGGGATAAGACTGAGCTGGAGAGGGCTTTTGGCTATTATGGCCCTTTGCGAAGTGTGTGGGTGGCTAGGAACCCTCCTGGTTTTGCGTTTGTGGAGTTCGAGGACCACAGAGATGCTGCAGATGCTGTCCGGGAGTTGGATGGAAGGACCCTTTGTGGATGTCGTGTGCGAGTTGAGATGTCTAGTGGAGAGAAACGGTCAAGGAATCGTGGACCGCCACCCTCTTGGGGTCGACGCCCGAGAGATGACTACAGGCGCCGGAGCCCACCCCCTAGACGCAGAGACGTCATGCCTCTCCTCATCACTGAACTAGTCGAATTTCAACACCATGTGACCAGCGTACACCAATCAGCTCACATGACTCAAGCATGGCCACCGGCCCATTGTCTCCTGAGCATGCCTGTTTAAGGCTCCTCCAGTTCCTTCAGCGTTAACCTGATCAGCAAAACTACCCAAGCCACTTGTGCAACCAATCAACGTCTCTTATCCTTCCCTAATGTCTTCAAAACTACCTACCCTCAGCCATCCTCAGCTAACATCTTCAGCCATCTATAGCAGTCAGCAATGTTAACGTCTAGAAACCATCTCCCCGCAAATTCTGGCCTCCTGACCAACACTCAGCCTCTTTCCATCATATCTAGCTTGTTGAAAACCAAACAATAATCACCCAGGAGGAGGAGTTTTAGCCGCAGTCGCAGCAGGTCTTTTTCCAGAGAAAGGAGAAGGGACAGGTCTCTGTCTCGAGATAGAAATCACAAACCTTCAAGATCTTTCTCAAGATCACAAAGTCGTTCCCGTTCTAACGACCGGAGGTAAGATGCCTCTGAAGTCTGACTTTTGGAAAAGTTGGTTGTGTCCTTCAGACAAAGGCCACTGATTATGGATgtctgttctttttcttcttaaacAAGATTGGGCCTTTTTAGTATGTTATTTTTGGTTTTCCATCACATcgtacccttttttttttttttttccccttgttGACTGATGGCAAATTTCAAtgtcgttttttttctttctttcatctttTAAACAAAGTAAAGTTCTGTAGATGGCCATAACTCCTAAATTAGGTGTAAAACCTGGCTGAACTTTAGTCTCTTCTGTTTTTCccttctttttaataaaatgatgaaaatgt
>XR_002650712.1
CTATCAGCTGACCCAACTATATGCAAATTAagtgagctagctagcattcTAGCCAGCCTGTTCTAGAGGTGCGTGTTTAGCTGCGGTTTGCTGCACAACAGACCTGCGTCTAGAGGGAAAACCGAaattGTATTTCTGTGAAGCTGAGATTCCTTAAGGCTACACATCGGAAATGGGAGATCCTTCCCTAAGTCGAGACTGCCCAATAGACTGTAAGGTTTATGTGGGTAATCTAGGCAACAGTGGGGATAAGACTGAGCTGGAGAGGGCTTTTGGCTATTATGGCCCTTTGCGAAGTGTGTGGGTGGCTAGGAACCCTCCTGGTTTTGCGTTTGTGGAGTTCGAGGACCACAGAGATGCTGCAGATGCTGTCCGGGAGTTGGATGGAAGGACCCTTTGTGGATGTCGTGTGCGAGTTGAGATGTCTAGTGGAGAGAAACGGTCAAGGAATCGTGGACCGCCACCCTCTTGGGGTCGACGCCCGAGAGATGACTACAGGCGCCGGAGCCCACCCCCTAGACGCAGAGACGTCATGCCTCTCCTCATCACTGAACTAGTCGAATTTCAACACCATGTGACCAGCGTACACCAATCAGCTCACATGACTCAAGCATGGCCACCGGCCCATTGTCTCCTGAGCATGCCTGTTTAAGGCTCCTCCAGTTCCTTCAGCGTTAACCTGATCAGCAAAACTACCCAAGCCACTTGTGCAACCAATCAACGTCTCTTATCCTTCCCTAATGTCTTCAAAACTACCTACCCTCAGCCATCCTCAGCTAACATCTTCAGCCATCTATAGCAGTCAGCAATGTTAACGTCTAGAAACCATCTCCCCGCAAATTCTGGCCTCCTGACCAACACTCAGCCTCTTTCCATCATATCTAGCTTGTTGAAAACCAAACAATAATCACCCAGGAGGAGGAGTTTTAGCCGCAGTCGCAGCAGGTCTTTTTCCAGAGAAAGGAGAAGGGACAGGTCTCTGTCTCGAGATAGAAATCACAAACCTTCAAGATCTTTCTCAAGATCACAAAGTCGTTCCCGTTCTAACGACCGGAGGTAAGATGCCTCTGAAGTCTGACTTTTGGAAAAGTTGGTTGTGTCCTTCAGACAAAGGCCACTGATTATGGATgtctgttctttttcttcttaaacAAGATTGGGCCTTTTTAGTATGTTATTTTTGGTTTTCCATCACATcgtacccttttttttttttttttccccttgttGACTGATGGCAAATTTCAAtgtcgttttttttctttctttcatctttTAAACAAAGTAAAGTTCTGTAGATGGCCATAACTCCTAAATTAGGTGTAAAACCTGGCTGAACTTTAGTCTCTTCTGTTTTTCccttctttttaataaaatgatgaaaatgt

Function

NR:

description
serine/arginine-rich splicing factor 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254336.3 False 1009 mRNA 0.45 7 35555960 35559726
XM_007254337.3 False 994 mRNA 0.45 7 35555979 35559726
XM_007254338.2 False 954 mRNA 0.45 7 35553603 35559726
XM_022675724.1 False 981 mRNA 0.45 7 35553601 35559726
XR_002650711.1 False 1375 misc_RNA 0.46 8 35555979 35559726
XR_002650712.1 True 1388 misc_RNA 0.46 8 35555962 35559726

Neighbor

gene id symbol gene type direction distance location
LOC103021651 slc6a13,LOC108413697,LOC107567077,LOC107721195,LOC107584422,LOC108271735 coding upstream 29686 35503056 ~ 35523915 (+)
LOC103022280 LOC103022280,LOC108436247,LOC108271634 coding upstream 82396 35462800 ~ 35471205 (+)
hemk1 NA coding upstream 284230 35254096 ~ 35269371 (+)
cav3 cav3,LOC107749619,LOC107584510,LOC107750282 coding upstream 729892 34815978 ~ 34823709 (+)
LOC103023460 NA coding upstream 749320 34798245 ~ 34804281 (+)
LOC103046487 NA coding downstream 22697 35582423 ~ 35594235 (+)
trub2 trub2 coding downstream 56598 35616324 ~ 35620073 (+)
hdhd3 hdhd3 coding downstream 61926 35621652 ~ 35625208 (+)
LOC103043339 LOC108440316,LOC108271728 coding downstream 89111 35648837 ~ 35661125 (+)
sfi1 NA coding downstream 127900 35687626 ~ 35709189 (+)
G115876 LOC108271732 non-coding upstream 4054 35535980 ~ 35549547 (+)
G115874 fkbp5,LOC108271732,LOC108413698,LOC105026479 non-coding upstream 21580 35529492 ~ 35532021 (+)
G115873 NA non-coding upstream 27091 35525409 ~ 35526510 (+)
LOC111193769 NA non-coding upstream 28512 35524334 ~ 35525089 (+)
G115861 LOC108436256,LOC107750275 non-coding upstream 69846 35480195 ~ 35483755 (+)
G115925 patz1 non-coding downstream 101717 35661443 ~ 35664877 (+)
G115915 eif4enif1 non-coding downstream 116452 35676178 ~ 35676841 (+)
G116020 NA non-coding downstream 302488 35862214 ~ 35862823 (+)
LOC111193772 NA non-coding downstream 335221 35894947 ~ 35899393 (+)
G116050 NA non-coding downstream 371198 35930924 ~ 35933206 (+)
LOC103023619 cadps,LOC106953609 other upstream 189961 35290828 ~ 35363640 (+)
LOC111193767 NA other upstream 423528 35057150 ~ 35130073 (+)
G115736 NA other upstream 544659 34920701 ~ 35008942 (+)
LOC103038162 NA other upstream 1161642 34380297 ~ 34391959 (+)
rbm38 rbm38,LOC103039930,LOC108436278 other upstream 1212857 34330998 ~ 34340744 (+)
G115917 NA other downstream 83148 35642874 ~ 35676035 (+)
G115931 NA other downstream 170653 35730379 ~ 35734359 (+)
tomm6 NA other downstream 398817 35958543 ~ 35967878 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other downstream 422393 35982119 ~ 35988060 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 783259 36342985 ~ 36359777 (+)

Expression


Co-expression Network