LOC103022280 (LOC103022280,LOC108436247,LOC108271634)


Basic Information

Item Value
gene id LOC103022280
gene name LOC103022280,LOC108436247,LOC108271634
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35462800 ~ 35471205 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254349.3
ctctctctaacacacacagtgCCTGGCTCCTATGTAGATGCGTCTTTGTAGTGAATTCTCAGTCAGTGTCTGAGCTGTTGGATGGGTGAGGAGCCGTCACTCCTTCTTTGAGAGATATACAGACTGATGATCAATCGTCTTCATCAATGTGTATGGTCATATTTGCTCCGctttttgctgtttttgcatttgcattatGTGGCGGATATTCTGGGCAGATAACGGTTAAAGTGGAATGTCTGGATAAAACCCAAAGCAACATCAGTATCAGATTCGCCTATCCGTTCAGACTCCAGCAGGTTCACTTTAATGCTCTTCTctgtgagagaaagaggcatGAGACTGTTTTTCTCGAGGGAGATTACTCGTCTTCTGCGCAGTTCTTCGTTACTGTCTCTGTTCTCGCTTTTCTGTACTCCCTCCTGGCTACAGTAGTCTACATCTTCTACCAGAACAAGTACAGAGAAAAGAACAGAGGCCCTGTAGTGgATTGTTTGGTAACAGTGGTTTTCTCGGGTCTGTGGTTTGTGAGTTCAGTAGCCTGGGCTAAAACTCTCTCTGGATTGAAGAAAGCCACAGATGTTGGTCAAATGCAGCTTTTATTGTCTGCCTGCAGAGATCCAGAGAACCTGTGTGAGACCCTACAAGAACCTGCCTGGACCAATCTTAACATGTCGGTGGCCTTTGGCTTCTTGAACTTCTCCCTGTGGGCTGGTAACATTTGGTTTGCCTACAAAGAGACAGGCTTACACAACTCCGGTCAGCGCCACCTCTCCAGAAGCCTCTCAGAGAAACGCAGCAGTAGTTTCAGGCAGTACAGTCAGTCCAGCTTCGATCAGTCTGGAACAGGCTTTGGACAGAGGCTCTACAGCCAGGCCAGTTTTGACCTGTCAAGTGGAAACTTGAGCCTGCCGCAGACCACTCTGGGACAGCCGATGCTGTACAGACAGATGGGGAGCCCCACCTCCAGAGGACCTCTGATATTTATCAATGAGAGTCAGTGAAAGAAGAGGACTCAGAGTGATTACAGCGTATAGAGCAAGATAAAGAAAGACAAGAGCCGAGGGGAAGACAAGGGAAATGACAAGGggaagagatagaaagagtgagaagataaagagaaagtAAATTAGGTTCTGAGAAATGTGGGTCCTGTGGGACACAAAAAGACAGAAGCTGCATAAACCGAGGCCAGTGGCAGGATCTGAGGCCACATTTTCGAGTAATCGTTCGTTATTGGCTGAAGTGGTTATTTTTTGGATGTTTAAGTAAGTTTGGATAACGCTTTCTGTAGCTCAGTCGTGTACTTTTTTTATGAGTTTAATATGGTGATGAATTATGCTTCAGTGTACCAACTTTCAAATGAAAATCAAAAATATTTAGCCTATAAAAATGCAGTATGTGTTACAAAATGATTGTGGACACTTTAGTTTGCATCCATTGCTTACAAAAATGTGAAAGTGCACAAACACAGCTTATCTAGTCTTTGTAGAGAAGTATTAacaaaagaataggactctctaggTCAGATAATCAACCTATTTGCAGCATACCTAATGCCAGAAATGTGctaagggggggggggtataaTGCACTTCAGCACCCAGTTTTGGAGCAGTGAaagtgtgttctctggaataatagtacttttgggatgagtttaaaAGTTGGTGATGAGGAAGTGATCAACATCACGATCTCAATTCTTACAGCAGTGGAATCGAAGtagagacagtagagacagttactccaacaagaACTGttgaaactattttttaaataccctTGATTACAGAGgtaacaataaatgagcaggaCCCAACATTTCTGCCTGTATAgtttatgattatttaaatatttatattggttATGTAACATGGCAGTACTTTATTTGCTTTACACAATGTGTTTGAAGTGTATGAGCCTAAAAAGGCCAGTGAATTTGACTTTATTATTGTAACACTTGCATCACGTGCATATTCATTGTGTGCATACCCTGTGTAAGACgttaaaagtgattttaaatgATGGACTTCCACAACTAaatgagaaacatgagaaaCTGCACATAGACTACACTTCCTGTttgatataataattacagtgcACATTTCTGAAAGCTGCAGTGATTAGATAGTAATTCTTGAGTGATTGGTGTAGTTTAGAGGGTAATAACACTACTTTTCTTATGGCAGACTAGACTTTGATTCCCTGGACAGACTTGTACAACACACTACACCAATAGGGCTACGTTCTCACAGCACGGAAAAGTGGCCCAAAATGTTTGTTTAGGCTGTccacattatattattaatgtgATCTACATCATACCTTTGTCTAAAAAAAGTGTGTGCTCCCAAACTGACAAGTTTGCGCAAAAGCGCaatgcttcacgtgaagtttcagtttcatctttaACAGCATCACAGGAATTCCATTGGCTGACAGCAACAGGCACTTCTCTGGTTTGCATCCttggtttctttaaaatattttctttacttgCCACATCCTTCCATGGCCATGTTTAGTTTGaaaatgttgttttctttggaaaTGTTGAAAATGTTTTCAAACACAGACCAGTTTCAATATGTGTGGAGGTGCTATTCCACCGCTGAAAACCTCCCTCATTGCTGTTGTCCATTTCCCTTTTTCCTGCATTTTCAGTGAATATATTGTCATAAATTTCACATGAATTCTGATCTGGCTCAGAATGGTTCACCTTAAGACCCCCTGCAGTATATCAGATTTGAAAGCGatccaaatcaaactgaactatAGGGTTTTGCTGTTCACACCACCACACAGATCTGCAACTCctctgtttaaaatataattaaatagatTAGATTTGAGCCACTTTAATCTGCTGTTTGAACATAACCAAAACCTACATTCTCCAAAATGTGTAACATGATTCAAAAGTCATATTATGTTTCTCTAGACAAGAATGTACAGCCTAATGTCATTCATAAAgtctatattaaatattaaaatattgtttcacCAAAACCACAGAAGTTTAGAAGGTATCTGGAGATGTGAAATGTCTGATCAGAGGTCTGTGTTGTTTAGTCACAGTTTCCAGTGCAGTGCATGAAGTgtagtgatgtaaaaaaaaaaaaaaagtcagagtAAACACAAGTGATGCAATGATGTTGTAACTAGTAGAGTTCGATACTCAACACTGTAAGCTGGCCTTGTTGTTTGAAAAGGGAATAAAACATTACGAATTCTGTCAA

Function

NR:

description
synaptoporin-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254349.3 True 3245 mRNA 0.40 5 35462800 35471205

Neighbor

gene id symbol gene type direction distance location
hemk1 NA coding upstream 193429 35254096 ~ 35269371 (+)
cav3 cav3,LOC107749619,LOC107584510,LOC107750282 coding upstream 639091 34815978 ~ 34823709 (+)
LOC103023460 NA coding upstream 658519 34798245 ~ 34804281 (+)
LOC103034490 LOC108436251,LOC107658083,LOC107750281,LOC107584511,LOC107749617,LOC107567083,LOC107673479 coding upstream 683035 34777298 ~ 34779765 (+)
parp3 parp3,LOC107749614,LOC107673445 coding upstream 689865 34761583 ~ 34772935 (+)
LOC103021651 slc6a13,LOC108413697,LOC107567077,LOC107721195,LOC107584422,LOC108271735 coding downstream 31851 35503056 ~ 35523915 (+)
LOC103046487 NA coding downstream 111218 35582423 ~ 35594235 (+)
trub2 trub2 coding downstream 145119 35616324 ~ 35620073 (+)
hdhd3 hdhd3 coding downstream 150447 35621652 ~ 35625208 (+)
LOC103043339 LOC108440316,LOC108271728 coding downstream 177632 35648837 ~ 35661125 (+)
G115848 NA non-coding upstream 30661 35431775 ~ 35432139 (+)
G115774 NA non-coding upstream 112855 35321962 ~ 35349945 (+)
G115778 LOC108436257 non-coding upstream 129213 35326231 ~ 35333587 (+)
G115777 NA non-coding upstream 137380 35324423 ~ 35325420 (+)
G115765 NA non-coding upstream 173552 35288643 ~ 35289248 (+)
G115861 LOC108436256,LOC107750275 non-coding downstream 8990 35480195 ~ 35483755 (+)
LOC111193769 NA non-coding downstream 53129 35524334 ~ 35525089 (+)
G115873 NA non-coding downstream 54204 35525409 ~ 35526510 (+)
G115874 fkbp5,LOC108271732,LOC108413698,LOC105026479 non-coding downstream 58287 35529492 ~ 35532021 (+)
G115876 LOC108271732 non-coding downstream 64775 35535980 ~ 35549547 (+)
LOC103023619 cadps,LOC106953609 other upstream 99160 35290828 ~ 35363640 (+)
LOC111193767 NA other upstream 332727 35057150 ~ 35130073 (+)
G115736 NA other upstream 453858 34920701 ~ 35008942 (+)
LOC103038162 NA other upstream 1070841 34380297 ~ 34391959 (+)
rbm38 rbm38,LOC103039930,LOC108436278 other upstream 1122056 34330998 ~ 34340744 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other downstream 82396 35553601 ~ 35559726 (+)
G115917 NA other downstream 171669 35642874 ~ 35676035 (+)
G115931 NA other downstream 259174 35730379 ~ 35734359 (+)
tomm6 NA other downstream 487338 35958543 ~ 35967878 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other downstream 510914 35982119 ~ 35988060 (+)

Expression


Co-expression Network