hemk1


Basic Information

Item Value
gene id hemk1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35254096 ~ 35269371 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254372.3
CGTTAAGtgtgtgctggtgctggtgtgtgtgtgtgtgcatagcATTAACAGGTTCTAAGTAATAACAGTTATGGTCCAGTTATGTTTGTGTTAAGCGGCTTTTCTTCATGCCGATTCATTTAGACCGGTTGGGAAATGTACTGCAGTATAAAACGCGTTATTCAGCGCCTCAAACCGAGCGGTTtattccagcagcagcagcaggctTTGGTCCGTGTGCCCTGCAGAGCTGTAGGTGGCGCTGTAGGCCCACCTATAGATGGCAGTGTGACAGTAGAGCAGGCAGTCAGTCTGTGGGCTCAACACTTCCAGCAGCAGGACATTTCTGAACCACTTCTGTCCAGCAGTTACATCATAGCTCACATACTTGGGCAGAAAACAttGGAGTGTATCGAGAGGAGTAGGCTCGGGGACAGATTGACTGAACAGCAGAGAGAGATGGTGTGGGAACTGTGTTCAAAACGCCTCACAAGGATGCCAGTTCAGTATGTGATAGAAGAGTGGGATTTTAGGGACCTCACTCTGAAGATGAAACCTCCAGTGTTCATCCCCCGCCCTGAAACAGAGGAGCTGGTTAGTTTGGTGTTGGAGGATCTGCAGGAACAGCAGAAGGATAAGACTCGGCCTGCTTTACGATGCCTAGAGGTGGGCTGTGGAACCGGCGCCATCTCTCTTAGCTTACTGCACAGCCTTCCACAGCTCAAGGCTATTGCGTTGGACAAAAGCCAGGAAGCAGTGTGCTTAACGAAGGAAAACGCGAGCAGacTGGGGCTCGACGACAGGCTGAATGTTCATCATTTAGATGTTATGACGGATGAATATCTGATAGTAAGAGACTGCGGTGCTGTTGATGTGCTGGTCAGCAACCCCCCCTACCTGTTCACACAGGATATGGAGTCTCTGCAAGAAGAGATAGTCAgGTTTGAAGACCACGCTGCTCTAGACGGGGGATCAGATGGAATGTCAGTTATCTGTCAGATTCTAGCTCTCGCCCCAAAGCTCCTAACAGAAGAGGGtcgTGTGTATTTGGAAGTGGACCCCCGGCACCCCCCTATGATAAAGCGTCTAACAGAACAGAGGATGATTGGACTGCAGTATTTGGAGACACACTGTGATCTCACTAATAGGACAAGATTCTGCGTTCTACAGAGAAGGAGATGAGtgggagtgaaagagagggttTCTGTGTGACTAACAGGTACAGACTGTGTAAGAATGTCAGGTCAGATATGGGTtgagaaagagggggagatggatggatagaacaCATAACTTGGAAGAAAGCTGATATGGAGACGATGGATGGAGCCACCGCCATGAAGGATCTGTTTCTGTGGCCATGTGCCAAAGTGCATTGCTTGCATCTCAGCTCCCATCATAAGCTGCCCTCTCCTCTGCAcgtcctgttttttaattaaaggacCCACATCATCAAAGTGCATTTATTTGAGCCAAGTGAAAGGACCCTTTTTTCCTGCAAAGCTACATAAACAACCATATCAGTTTTGATATCATACTGTCATGTGTTTGAATGTTTAAGCCTGTTCTGCTGGAAAGCTCATAAATAGTGTACagtacagccaatcagaacagagatcATTAAGTGGTATGTAAGAATATggcattttcttttcttcctggCCACCCTTACATTTGCtcacttttacaccactgttataaatacaaatacttatttcagctgctctttgtgtgcatttgtggACAAGCTGAGACATACAGAACTAGCATCTGTAGTGAAAAATGCATGTCTGTGGACAAGATAAAGTACTACAACAGGTTTTTACAAAGTTACATAGTCCAGTAGCAGCATTTTGTGTCTGAAGTTCAATAACAGAGATGCTTTTCTCCCTGTTACAGTCAGAGGACCATcaacatgtttttaatgtttttgattaAATCGTTATTTAATGTTGCATTAAAGGCAGAtcagtaaaacagtgtttattattaatgcatAAAGCATTATGGGAGAATGGTcatgtatacatttattacacagGTGCATTTAAAGTGCCTGTTTTCAAGCGTTCCCTGGCTTGGCTTCTAGCTATATTTCTGACCTTCTCCATTTTCATTTCACCCCAAATGCTCTAAAGTCCTCCACCCATTTGCTTTtatatctctctcactcaggGGGTTTCTTTAGCTCTTTCAAGACTTTAAAACAAGCTTCCATCCAACAGTCTTTTTATCACCCACAGGagatatttattaaagtctgggAAATAATAATTTGATCCTCTTCTTATTTAGTAAGTTTACCCTCTATACTTTTAATTGTAGGTTTAATTTAAAGAAGAGAGACATAACATCAACAAAACATcttgaaaaatattaaatcaaagTTATACATTAACTTATATTTGATTatgtgaaataagtatttaatcCCCTAACAACCAGCAAGAATTCTGACCCCCACAAACCAGTTTTGTGCCGAAGAGGTGCCCAAATTAGTCATTTCATTTTAGGAAGGCAATGTTAATCTGTATAAAAGACCCCTGTCACAGAATCAGTCTCTTCCATTTAAACCTCTCTTCCACTGTTGGCAAAACTAAAGAcctgtaaaaaaatgttaaggACAAGATTGCAgactattttattattctctattctcttttaACAGATCAGACTTTCACTAAGTTGTCTGTTTATTTCAAGCCATCAACAGCTCTttctttattagatttttttgtatttgtttttatgtgtacattttctttttgtttaatattaactagttcttttttattttgcagcACTTGtgctattgaaaaaaaaatgccataaCATGATCTGAATTATGACTTTTTGCTACATAAACTTATGGAAGCAACAAATAAAATCCAGGAAAATGAA

Function

NR:

description
hemK methyltransferase family member 1 isoform X1

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K02493 hemK, prmC, HEMK; release factor glutamine methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254372.3 True 2880 mRNA 0.41 11 35254096 35269371

Neighbor

gene id symbol gene type direction distance location
cav3 cav3,LOC107749619,LOC107584510,LOC107750282 coding upstream 430387 34815978 ~ 34823709 (+)
LOC103023460 NA coding upstream 449815 34798245 ~ 34804281 (+)
LOC103034490 LOC108436251,LOC107658083,LOC107750281,LOC107584511,LOC107749617,LOC107567083,LOC107673479 coding upstream 474331 34777298 ~ 34779765 (+)
parp3 parp3,LOC107749614,LOC107673445 coding upstream 481161 34761583 ~ 34772935 (+)
LOC103035135 grm2,grm2a,LOC107657935,LOC107673619,LOC107567094 coding upstream 498793 34689863 ~ 34755303 (+)
LOC103022280 LOC103022280,LOC108436247,LOC108271634 coding downstream 193429 35462800 ~ 35471205 (+)
LOC103021651 slc6a13,LOC108413697,LOC107567077,LOC107721195,LOC107584422,LOC108271735 coding downstream 233685 35503056 ~ 35523915 (+)
LOC103046487 NA coding downstream 313052 35582423 ~ 35594235 (+)
trub2 trub2 coding downstream 346953 35616324 ~ 35620073 (+)
hdhd3 hdhd3 coding downstream 352281 35621652 ~ 35625208 (+)
G115757 NA non-coding upstream 15936 35237620 ~ 35238160 (+)
G115755 NA non-coding upstream 49920 35202917 ~ 35204176 (+)
G115619 NA non-coding upstream 519169 34688232 ~ 34734927 (+)
G115614 NA non-coding upstream 567716 34672853 ~ 34686380 (+)
trnaf-gaa_1 NA non-coding upstream 826556 34427468 ~ 34427540 (+)
G115764 NA non-coding downstream 11238 35280609 ~ 35280927 (+)
G115765 NA non-coding downstream 19272 35288643 ~ 35289248 (+)
G115774 NA non-coding downstream 52591 35321962 ~ 35349945 (+)
G115777 NA non-coding downstream 55052 35324423 ~ 35325420 (+)
G115778 LOC108436257 non-coding downstream 56860 35326231 ~ 35333587 (+)
LOC111193767 NA other upstream 124023 35057150 ~ 35130073 (+)
G115736 NA other upstream 245154 34920701 ~ 35008942 (+)
LOC103038162 NA other upstream 862137 34380297 ~ 34391959 (+)
rbm38 rbm38,LOC103039930,LOC108436278 other upstream 913352 34330998 ~ 34340744 (+)
G115510 grm7,LOC108271537,LOC107668159,LOC107708172,LOC107569297,LOC108427575 other upstream 1157231 34095917 ~ 34096865 (+)
LOC103023619 cadps,LOC106953609 other downstream 21457 35290828 ~ 35363640 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other downstream 284230 35553601 ~ 35559726 (+)
G115917 NA other downstream 373503 35642874 ~ 35676035 (+)
G115931 NA other downstream 461008 35730379 ~ 35734359 (+)
tomm6 NA other downstream 689172 35958543 ~ 35967878 (+)

Expression


Co-expression Network