orc1 (orc1,LOC107725193,LOC105913168,LOC104957406)


Basic Information

Item Value
gene id orc1
gene name orc1,LOC107725193,LOC105913168,LOC104957406
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 41324722 ~ 41335529 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258340.3
CTTTCGCGGGAAAAGTTGTGTGTCGTGTCTGAAGGCAACAGGGGGTTGGGGGAGACAGAGCGAGCACGGATcagtgttttaaagttttaacgTTATATCACTTTCCCATCTAGTAAGGATAACAGCACACGCAGCATACTGTCGGATTGGTTAAAGAAGCTTGATATATTGCAGAGGCTCTACTAAAAGTCACCAAAATGAGCCGCTACCACACTATGCTACGTATACGAAGGAGTTATAAACTGGAAGGAAGGCCGATTACAGAAGACAGAAAACTGAAGAGAGCGTTTTATAGGTCTTTGTCTATAGCTGTGGATGGAAGGCCGAGGAAAGCTGTGGTGTCTGTAGGCCAGTGCATACTGATTGAGGGAGATGACGAGGACAACCCGTTTGTTGCACAGCTTCTTAAGCTTTTCACTGATGACActggaaagaagaaaaaggcAGTGGTGAAGTGGTTCGTGCGTGTAAGTGAAATACCATCCAACAAAATAGGGCTTCTGGGCAGAGACCCCCACCCTCAAGAAATCTTTTACTACCAAGATAGCTCCTGTGACAACGAGGTGGATGCCGAAACCATCCTAGGAGCAGTTCAGGTTACCCAGATTCCTGCTGAGGCTCAGTTTCCAGATGGGGCAAGCAAGGATACTCTGTTTGTGAAGCTTTTGTGGGACACTAAGGCATTTCGAATTTTGGACACTGAGCTGTTTCAGTCTCCTCAGAGCCCCAGGTCTCCACCACCCGCCCAGCGTGCACCCAGACTTCGTTCTCTCCCCACCCCAGACCCCAGTGTGATGAAGAGAGCCATGACTGGCATTGCAACCCGTGGCAGCATGAGCACGGGCAAGATAAACTCAACTGAGGCAGAGTCGGCCCACTCTGCTTCCAAGCTCTCTGCAGCTAAAGTACTGAATGTAAAAAGGAGAAGCAGAGTCTCCTCAAATCCAACCATCCGCAAGAAGTTGGACCTTTGCAGTCCAAGTAAGAAGCTTACTAGGGATGATGTTCTTGGGGAGATATTGGACGATGACCAGGAAATGGAGGAAGACCTGGCCACTAAAATGGGTGGTTCCCCACCTCCTCGTATCTCCATCACAATCAGGCTCACTCCTCTTTCAATCCCTCTTAAATCCTCCACTGTAGAGGACATGGACAATGTCACCTCCAGCAGGGACTTTGATGGGGTTCAGTCCCTAGAAGATGATGATGTGTTTGAGATTGGGTCAGTGCTTGCCAGTAAAGGCAGGACTCCTCGTAGGAGAGACTCCACTCCCAGGAGAGCCAGTCTTAGGGGACAGAAAACTCCCTCTAGAAGACAAGAGTCTACAACAGCCAGAGAGACGGCCCTTGCTGTGCTGGCTGAGGAAGAGCATGAAGACTCTCCTGCACTGAGTGCTGCTACTCCCCGCTCTAAAAGGAAGTCAGCCCAGTGTGTCTCCTCCCGCATCAAGAAGCAGCTGAATATGCTGAGTAACCAGGATGAGCTGCAGTCCGATGGCGAGGATGCTGGTGACGATGGCTGTTTCGTACCTACCAAGCTAGACCTAGAGAGCAGCAGtgatgaggaggaagaggagatgAAAGGCGACAGTGAAGATGAGCTTGTTGTGAAGAGGAGCAGACGTTCAACCTGCCCGAAAACTCCTCGCTCAACTGAAAAAAGAAGAGCGTCTGCAAGAACACCACGCAAAACTCCCAGCAAAAAGGCTGCTCCATCTACTCCTCGAACACCTCTTCATGCCACCCCTAGCATTCCCGCCAGAAGTTTGCCAGCTCGAAAGCCAGGGAATGTGCTCGAAGAGGCAAGGCTACGGTTGCACGTGTCCTCAGTTCCTGAGTCTCTGCCATGTCGAGAACAGGAGTTCCAGGACATTTACAATTTTGTGGAGAGTAAGGTCATGGATGGCACAGGAGGgtgtATGTATATCTCCGGCGTTCCTGGCACAGGGAAGACTGCCACAGTGCATGAGGTGATCAGATCTCTCCAGCAGGCAGCGGAGCAAGATGAGATCCCTCACTTCAACTTCATAGAGATCAACGGCATGAAGATGACTGACCCACACCAGGCTTATGTTCAGATACTGCAGaaactgaccaatcagaaggCGACGGCTGACCATGCCGCAGCTCTGCTGGAGAAGAGGTTTAGTATGCCGGCACCAAAGAAAGAGACCACAGTGCTGTTGGTAGATGAGTTGGACCTTTTGTGGACCAGGAAGCAGAATGTCATGTACAATTTGTTTGATTGGCCAACAAGACGGCATGCCCGCCTGGTGGTGCTGACCATTGCAAACACTATGGACTTGCCTGAGAGGATTATGATAAACCGTGTGGCCAGTCGCCTGGGGCTGACACGCATGTCTTTCCAGCCGTACACTTTTaagcagctgcagcagattATCACCTCTCGACTGAACAAAGTGAAGGCTTTTGAGGAGGATGCTCTTCAGCTAGTATCGAGAAAGGTGGCAGCTCTGTCAGGTGATGCACGCCGCTGTTTAGATATATGTAGGCGAGCCACAGAAATCTGCGAGTACTCCAGTCAACGGAGCAGCACAGGATTGGTTGGGATGAGTCATGTGATGGAAGCTTTAGATGAGATGTTTTCTTCTTCCTATATCGCAGCAATCAGGTGTACCTCTCTGCAGGAGCAGCTCTTCCTCAGGGCAGTGATTGCGGAGTTtcgtaggttaggtttagaagAGGCCACATTCCAACAGGTGTTTGTACAGCACCAGGCTCTGTGTCGAATGGAGGGGTTGCAGCCGGTGAGTGTGTCTGAGGGTCTGGCTGTGTGTCAAAGACTGGGAGCCTGTCGTTTGCTCCTTCTGGAGCCCAGCCGTCTAGACTTGCTGCTCCGTGTTCGCCTCAATGTCAGCCAGGATGATGTGCTGTATGCCCTGAAGGCTGACTGAGATCCTTACGCTGTGTATTCTTCCCTGCATGAAACTGTGGTTTTTGCACAAGAATGTCAGTGGAACATCATTATGGGCATCTCCTTGTATGGATTTTTCCAGTTAAGGTTTCAGGAGATTTTGACACACAATTGTtctggcttttaaaatataaatgagcCTCCTCCTATGCTCAGCCTTTTGAACCCGAGGAAACTGGTTTTGTTTGAATGAAAATGTACAATAAGCAATTACGTGATCATGCTGCAATGCAGTTTTTGCAGCAGTGGTGCTGAAGAGCACTTAGGGGTACGTAGTGGAATATCCAGGATGGATAGCAGGATTGTACTTGGAATCaagttattttaattacatatttgttTTGGGTGCAAAATACActgatttaatacattttattattggaGAGTGAATCTCCCCCTATTGTGTTGAGCACATAATGTCTGTCTTTTTAAGGTCTGTCTAATTGTGTGTAAATTTGGTCATCTTTAAGTCGGCCAAATATTTTATCTTTGTTGATCTGTTTTAATTTTCTTGAAGTCGCTAATAAAATTATTGAAAATTC

Function

symbol description
orc1 Predicted to enable DNA replication origin binding activity. Acts upstream of or within several processes, including chordate embryonic development; cilium assembly; and response to yeast. Predicted to be located in nucleus. Predicted to be part of nuclear origin of replication recognition complex. Is expressed in proliferative region and tail bud. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 1. Orthologous to human ORC1 (origin recognition complex subunit 1).

NR:

description
origin recognition complex subunit 1 isoform X4

GO:

id name namespace
GO:0001878 response to yeast biological_process
GO:0040014 regulation of multicellular organism growth biological_process
GO:0006260 DNA replication biological_process
GO:0009790 embryo development biological_process
GO:0000808 origin recognition complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K02603 ORC1; origin recognition complex subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258340.3 True 3477 mRNA 0.48 20 41324722 41335529

Neighbor

gene id symbol gene type direction distance location
c13h1orf210 NA coding downstream 64143 41251017 ~ 41260579 (-)
LOC103032504 ap1m3,LOC108441657,LOC107724146,LOC107684323,LOC108271949,LOC107692442,LOC106528254 coding downstream 75111 41224841 ~ 41249611 (-)
LOC103034848 NA coding downstream 547065 40755348 ~ 40777657 (-)
uhmk1 uhmk1,LOC107692420 coding downstream 688033 40619482 ~ 40636689 (-)
LOC111193786 NA coding downstream 2041807 39271790 ~ 39282915 (-)
tspan1 NA coding upstream 35507 41371036 ~ 41385641 (-)
LOC111193790 NA coding upstream 246304 41581833 ~ 41582017 (-)
mast2 mast2 coding upstream 545439 41880968 ~ 42081872 (-)
tmem69 tmem69,LOC107579605 coding upstream 747688 42083217 ~ 42085827 (-)
nasp nasp,LOC107551040,LOC107594614 coding upstream 796048 42131577 ~ 42137885 (-)
G117357 NA non-coding downstream 17261 41304537 ~ 41307461 (-)
G117305 NA non-coding downstream 203674 41120752 ~ 41121048 (-)
G117300 NA non-coding downstream 232728 41091474 ~ 41091994 (-)
G117278 NA non-coding downstream 522296 40799599 ~ 40802426 (-)
G117277 slc35d1,slc35d1a,LOC108272060,LOC108441641,LOC107758361,LOC107551012,LOC107724140 non-coding downstream 526903 40795912 ~ 40797819 (-)
G117374 prpf38a non-coding upstream 7964 41343493 ~ 41347260 (-)
G117381 NA non-coding upstream 13968 41349497 ~ 41350906 (-)
G117383 pomgnt1 non-coding upstream 17980 41353509 ~ 41359883 (-)
G117387 NA non-coding upstream 83197 41418726 ~ 41418946 (-)
LOC111193695 NA non-coding upstream 126401 41461930 ~ 41486224 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other downstream 306908 40816133 ~ 41017814 (-)
LOC103034527 NA other downstream 555040 40731296 ~ 40769682 (-)
LOC103040080 LOC108440156 other downstream 960762 40360319 ~ 40363960 (-)
LOC103028549 NA other downstream 2033694 39284217 ~ 39291028 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 2361028 38953162 ~ 38963694 (-)

Expression


Co-expression Network