LOC103032504 (ap1m3,LOC108441657,LOC107724146,LOC107684323,LOC108271949,LOC107692442,LOC106528254)


Basic Information

Item Value
gene id LOC103032504
gene name ap1m3,LOC108441657,LOC107724146,LOC107684323,LOC108271949,LOC107692442,LOC106528254
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 41224841 ~ 41249611 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258347.3
GGGGGCGTTCAGTTTCACATTCAGGAGAAACCCACCAAAATCCTCCTCCAACTTCAGTACAGGAGCGGGTCCGGCTTTAGACAGAGCTTGGGGCGGTGCATGGGGCTGTGAAGTTGCGGGGCAGGGCGCCGGGCTGAGTGCGGGGCAGGGCGCGAGCGGACGGACAGGCTCTAAGGAAAAGCTGCTAAACTGGCTCGACGCCTCAGCACCCGGAAGAGAGAGCGGCGCGCGGAGGGATGGAAACACCTCTTCAGTTTTGTTCTCCGGGCGCGAGATTAAACCCATAAACTCCCTTATCTGCTGTTTATTCACACTGTTACAGAGCAGGATGGCCGCCTCCGCTATCTTCATCCTGGACCTGAAGGGCAAGGTGCTCATATGTCGAAATTACATGGGCAGCGTTGACATGAGCGAGATTGACCACTTCATGCCAATCATGATGAAGAGGGAAGAAGAAGCCGAACTATCACCTGTGGTGACCCGTGGCTCCACCCACTTTTTATACATTAAACACAGCAACCTTTATTTGGTAGCAATTACCAAGAAGAATACAAATGCTGCCCTTGTGTATTCTTTCCTGTACAAGTTAGTGGATGTCTTCACTGAATACTTTAAGTCTTTGGAGGAGGAGAGCATACGAGACAACTTTGTGACTGTGTACGAGTTAATGGATGAGGTCATGGACTTCGGTTTGCCTCAGACAACGGACAGCAAGATCTTACTGGAGTATATTACCCAGCAAGGGCATAAATTGGAGGTTGGAGCACCACGTCCCCCAGCAACGGTTACCAACGCCGTGTCTTGGAGGTCAGAGGGAATAAAGTACAGAAAGAATGAAGTGTTTATGGACGTCATTGAATCTGTCAATTTACTGGTCAGTGCTACAGGCAGCGTCCTACGCAGTGAGATTCTGGGTTGCATCAAACTGAAAGTCGTTCTCTCTGGCATGCCTGAGCTGAGGCTGGGACTCAATGACAAAGTGCTGTTTGAGATTACTGGCAGAGAGAAGAGTAAGTCGGTGGAGTTAGAGGACGTTAAGTTTCATCAGTGTGTGCGTCTCTCTCGCTTTGAAAACGACCGGACCATCTCCTTTATTCCCCCTGATGGAGAGAGTGAACTCATGTCCTATCGCCTTAACACCACGGTGAAGCCCCTTATATGGATTGAAAGCGTGATTGAGAAGTTTTCCCACAGCCGAGTAGAAATCAAAGTTAAGGCCCGGAGTCAGTTTAAGAGTCGCTCCACAGCCAATAACGTGTCCATTCTGGTGCCTGTGCCCAGTGACGCTGACTCTCCCAGATTTAAGACCAGCACAGGCAATGCCAAGTGGGTACCTGAGAAGAGCGCTGTGGAATGGGTCATCAAATCCTTCCCAGGAGGGAAAGAGTACATGATGAGAGCTCACTTTGGGCTGCCAAGTGTGGAGAGCGACGAAAAAGAAGCCAAGAGGCCGATTACAGTGAAGTTTGAGATCCCTTATTTCACTGTGTCTGGCATTCAGGTCCGATACCTAAAAATCATTGAGAAGAGTGGCTACCAGGCTTTACCATGGGTGCGGTACATTACACAGAGTGGAGATTATCAGCTGAGGACAAACTGAAGGAATTTGTTCAGAGTGATGGCTGTCTGTCCAGACTGTCCTGGCCTTCTGTTCTcatcagagagtgagagagggaggaacagagagagagaaagagagagggaattcTGTGATGTTCTCAAACATATGTATCtggtctctctttctttctgtgtgtgaaagagagcaagagagaggaaaagagaaaaatagaggaAGTGAACAAAGCAATAACAAGGTGTCACAGTGTattactgtagaaacactgATTTTGATTGTTGGGTGGGTGTTCTTTTCTATTgcactgattatatatatatgtgctctGTTACTTGTTTATGGAAtttcttaactgtttttttatgtatttaacgATTGTGTATGGATGTGTATATGGATATGTACGTCCATAATTGTAAGGAATGAACTTCTTTTATCGTTTGTTATCTGTCATGAAATCTGAAGTggcagtttttattattttgtttttgtagaaCTTTAAGGCGGAACCTGGCGGACTGATGGAGTGAATACCTGCGGCACAAAATCAATGATTAATAAGGTTGTACACTGTCGGGTAGCGGTGTAACACTATAGTTCCAC

Function

symbol description
ap1m3 Predicted to enable clathrin adaptor activity. Acts upstream of or within brain development. Predicted to be located in membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in clathrin-coated vesicle. Is expressed in cerebellum; hindbrain; midbrain; midbrain hindbrain boundary; and somite.

NR:

description
PREDICTED: AP-1 complex subunit mu-1-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K12393 AP1M; AP-1 complex subunit mu

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258347.3 True 2182 mRNA 0.47 12 41224841 41249611

Neighbor

gene id symbol gene type direction distance location
LOC103034848 NA coding downstream 447184 40755348 ~ 40777657 (-)
uhmk1 uhmk1,LOC107692420 coding downstream 588152 40619482 ~ 40636689 (-)
LOC111193786 NA coding downstream 1941926 39271790 ~ 39282915 (-)
lnp1 lnp1 coding downstream 2199679 39013038 ~ 39025162 (-)
LOC103031712 tmem45a,LOC107685333 coding downstream 2213087 39002702 ~ 39011754 (-)
c13h1orf210 NA coding upstream 1406 41251017 ~ 41260579 (-)
orc1 orc1,LOC107725193,LOC105913168,LOC104957406 coding upstream 75111 41324722 ~ 41335529 (-)
tspan1 NA coding upstream 121425 41371036 ~ 41385641 (-)
LOC111193790 NA coding upstream 332222 41581833 ~ 41582017 (-)
mast2 mast2 coding upstream 631357 41880968 ~ 42081872 (-)
G117305 NA non-coding downstream 103793 41120752 ~ 41121048 (-)
G117300 NA non-coding downstream 132847 41091474 ~ 41091994 (-)
G117278 NA non-coding downstream 422415 40799599 ~ 40802426 (-)
G117277 slc35d1,slc35d1a,LOC108272060,LOC108441641,LOC107758361,LOC107551012,LOC107724140 non-coding downstream 427022 40795912 ~ 40797819 (-)
G117276 slc35d1,slc35d1a,LOC108441641,LOC108272060,LOC101078039,LOC107551012 non-coding downstream 429037 40792755 ~ 40795804 (-)
G117357 NA non-coding upstream 54926 41304537 ~ 41307461 (-)
G117374 prpf38a non-coding upstream 93882 41343493 ~ 41347260 (-)
G117381 NA non-coding upstream 99886 41349497 ~ 41350906 (-)
G117383 pomgnt1 non-coding upstream 103898 41353509 ~ 41359883 (-)
G117387 NA non-coding upstream 169115 41418726 ~ 41418946 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other downstream 207027 40816133 ~ 41017814 (-)
LOC103034527 NA other downstream 455159 40731296 ~ 40769682 (-)
LOC103040080 LOC108440156 other downstream 860881 40360319 ~ 40363960 (-)
LOC103028549 NA other downstream 1933813 39284217 ~ 39291028 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 2261147 38953162 ~ 38963694 (-)

Expression


Co-expression Network