slc35d1 (slc35d1,slc35d1a,LOC108441641,LOC108272060,LOC107724140,LOC107758361,LOC107684099)


Basic Information

Item Value
gene id slc35d1
gene name slc35d1,slc35d1a,LOC108441641,LOC108272060,LOC107724140,LOC107758361,LOC107684099
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 40786228 ~ 40797936 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258350.3
TGGTGACGACACGGCTGGGCTGAACATGGCGGAAGAGGGAGAGCTGcgttagaggagagagagagagctgggcTGAGTAGAGGAATGTGAAGCTGGGGAGGAGAGGGACGCTCCGGTATGGCTGACGAAACGCTAACACTCCTGATCAAGCTTCTGGCTGCAGCTTTCTACGGCGTTAGCTCTTTCCTGATAGTAGTTGTGAATAAGAGCGTCCTGACAAACTACAGGTTTCCCTCTTCGATATGTCTCGGTATTGGCCAGATGCTGGCCACTGTGCTGGTGTTATGGGTGGGAAAGGCACTCAGGGTGATCACCTTTCCAGAGTGGGACCTCAGCATACCCAGAAAGACATTTCCTCTACCTCTTCTATATGTAGGGAATCAAGTAACTGGACTGTTTGGAACAAAAAGGCTAAATTTACCAATGTTTACAGTCTTAAGGAGGTTTTCCATTCTTTTCACAATGCTGGCTGAGGGGCTCTTGTTAAAgAAGAAATTTTCTCAGCCAGTCCAGCTCACTGTTTTTACAATGATTCTTGGGGCTTTTGTAGCTGCAAGTGCTGACCTGTCATTTGACATGCAAGGGTATGTGTTCATCTTACTGAATGATGTTTTAACTGCTGCAAATGGGGCATTTGTGAAACAGAAGCTTGACTCTAAGGAGCTGGGAAAATATGGTCTACTCTATTACAATGCTTTATTTATGATCCTGCCAACACTGCTTTTGGCACACGTCATGGGAGACATAGACAAGGCTCTGGATTATGATGGCTGGTCAGACATGCTCTTTGTTGCACAGTTCACCATGTCTTGCATAATGGGgtttattttaatgtactcCACTGTGCTGTGCACTCAGTACAACTCTGCATTAACAACTACTATTGTTGGGTGCCTGAAAAACATATTAGTGACTTACATTGGGATGGTGTTTGGAGGGGATTATATTTTCTCATGGACTAACTTCATTGGGCTGAACATCAgTATTGCTGGAAGTCTGGTGTACTCCTACATAACGTTCACAGAGGAACAGACCGCCAAACAGGGAGAGAGCATCAACAAACTGGAGGTGAAGGGGAAAGTGGCTGTTTGACCAGCGATTCAACACTCCACAGGTACAAGGGAACTGTACCTGTTAAAATTCAATGCAAGGTTTAGTAATGTGTAATATGTGAAAACCAGCCTATTCAGAAAGAAATGTCAGCAGGGAAGGATGCTACCCTCCTGACTAATGGTAGGGAAGAAGACTCAAAACAATCTCAAGCTCAAATAATCTCAAATACAGGGTGGTTGCAGGATTGTGCTGCAGCGAGCATGAATGTTaaagctgtatattttttagtCATGCTGTTTTGGGATCTCTTTTGGTGTTTGAAATCAAGGTGATCAATAGAAGAATCTGAAAGTTTTTGGTACAAACTGAGCAAGGACTGCTGTTCCGTTAAGTGGAGAAGTGATCAGTCCTGATGACCTCCAGCCCCTTGCCTTTATGTACAGTGTTCTGATGCActgcctctctttttttttttttttgcctttttttacacatatatttttgtCCCCGTAAAAGGTGTTGAACTAGTTTGAAAGGTCATTATTTATTGTCAAATCTTTTTGAAATAGTTTTTGTACTTCTTTTTTGATTCTGCAAAGGGAGATGTGTACTgtattttgaaacatttttggGTATGctcaaaacatatattttttattttattgtaaaactaCAGAAATATTCCCCAAGTTCTTAGAATATATTATGCCATCtatatacacagacacattatgaatatcatgatactaagaGATGATCATAATATTCTAAACCATTGAATAATGTGTATGTGAAGGTGCCACATACCTACTCTCAGTATTATGAAGGTTTCTTCTGACATTTCACAAAATATTTCAactctgtttttgtttcatttttctgttttttatatttgctgcAGGGGCTGACATGCAGTAACATGTTTTTGTACTGATGCCCTGTTATGGTAttctcttttttacatttcaaagtGAACAGTGTAGTTATTGCACTTTAACAGTTTACTGGTATTTCACAGTGTAAATTAAAGAAGTTGTTACTTGTTAAATTGTTGACTAACTCAACTGCCTTAGTTTTAGAACTATAACTGAGTAATAAGTAAGAAATGCAGAgagatatttatattaatggtacttttttgaaccagttcaaaatgtaaagatGTGTTCAGGGGTTTTGTCAAATGAATCTAGATGTTATACATCTGGAATATCCTTTGTAACTTCGAATGTATGCAGTGCATGTATTTTCACCAACATGTAATTTTCACATAGACTATTGATTAATGCATAGCAACATTGGTGAAACACAGGCTTACTTCTGCTGAAGGGCTGTTAAACTTGACATGGATGTGTAAACACTTTCAATGTTTTAAAGATGTGTGGGTTTAGACAAACCTGTGCATTTTGTTCTTGTTTGGTCAGAGTTGTAAAGTTCAAGATCACAACGTATTGTGACAGTCAGCATTTCTATTTACGGtaatcacttttttattatttttctgttcagttCATGTCTGCAGAGGCTCAGTGATTGTATCAGTGAGAATCTGAGCTTGTGTGcatttagaaattaaaataccTCATTGTTGTGTTTAg

Function

symbol description
slc35d1a Predicted to enable antiporter activity and pyrimidine nucleotide-sugar transmembrane transporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in Kupffer's vesicle; forerunner cell group; otic vesicle; and pharyngeal arch. Human ortholog(s) of this gene implicated in schneckenbecken dysplasia. Orthologous to human SLC35D1 (solute carrier family 35 member D1).
slc35d1 Predicted to enable antiporter activity and pyrimidine nucleotide-sugar transmembrane transporter activity. Predicted to be involved in carbohydrate transport and pyrimidine nucleotide-sugar transmembrane transport. Predicted to act upstream of or within chondroitin sulfate biosynthetic process; embryonic skeletal system development; and pyrimidine nucleotide-sugar transmembrane transport. Predicted to be located in endoplasmic reticulum. Predicted to be active in Golgi apparatus. Implicated in schneckenbecken dysplasia.

NR:

description
UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15281 SLC35D; solute carrier family 35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258350.3 True 2651 mRNA 0.39 12 40786228 40797936

Neighbor

gene id symbol gene type direction distance location
LOC103042225 NA coding upstream 3027 40777645 ~ 40783201 (+)
LOC103035173 serbp1,LOC107594603,LOC107758366,LOC107692416 coding upstream 53662 40725657 ~ 40732566 (+)
hsd17b7 hsd17b7,LOC107551038,LOC107724130 coding upstream 68158 40710906 ~ 40718070 (+)
ddr2 ddr2,ddr2a,LOC107551036,LOC107692417,LOC107724144 coding upstream 76401 40658400 ~ 40709827 (+)
uap1 uap1,LOC107551035,LOC107724142 coding upstream 132417 40637785 ~ 40653811 (+)
LOC103041612 LOC108440175 coding downstream 323190 41121126 ~ 41125571 (+)
tmem125 tmem125,LOC108440199,LOC107725195,LOC107684333,LOC107551025 coding downstream 396166 41194102 ~ 41216267 (+)
tie1 tie1,LOC107731644,LOC107684058 coding downstream 484915 41282851 ~ 41305229 (+)
mpl NA coding downstream 510640 41308576 ~ 41323618 (+)
prpf38a prpf38a coding downstream 545486 41343422 ~ 41347799 (+)
G117156 NA non-coding upstream 156084 40624010 ~ 40630144 (+)
G117154 NA non-coding upstream 165462 40619568 ~ 40620766 (+)
G117152 NA non-coding upstream 205924 40567208 ~ 40580304 (+)
G117147 NA non-coding upstream 423651 40360340 ~ 40362577 (+)
G117111 NA non-coding upstream 649501 40129092 ~ 40136727 (+)
G117183 NA non-coding downstream 19240 40817176 ~ 40821330 (+)
G117299 NA non-coding downstream 293565 41091501 ~ 41091992 (+)
G117324 ap1m3,LOC108441657,LOC108271949,LOC103463064,LOC106528254,LOC107724146,LOC103137203 non-coding downstream 428239 41226175 ~ 41233853 (+)
LOC111193789 NA non-coding downstream 507387 41305323 ~ 41306911 (+)
G117370 NA non-coding downstream 534265 41332201 ~ 41335785 (+)
G116997 NA other upstream 1426840 39358871 ~ 39359388 (+)
LOC103036266 LOC108441345 other upstream 2391698 38390277 ~ 38394530 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 3173906 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 3664901 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 4072344 36657392 ~ 36713884 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 1535 40799471 ~ 40808545 (+)
fam183a NA other downstream 361251 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 555565 41353501 ~ 41367729 (+)
G117642 NA other downstream 1553871 42351807 ~ 42355784 (+)

Expression


Co-expression Network