LOC103035173 (serbp1,LOC107594603,LOC107758366,LOC107692416)


Basic Information

Item Value
gene id LOC103035173
gene name serbp1,LOC107594603,LOC107758366,LOC107692416
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 40725657 ~ 40732566 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258355.3
CCACGCCGGAAGAGAAGCGAAAGTCTTTTTCCCAGCCATCTTGTGGCCTTTACTAGCGAGCTGTTCGCACCAAGCCTCGTAGAATCGGAGGAGAATCCTGCTGAAGGGGCGCCATCATGCCCGGACATCTGCAAGAAGGCTTCGGCTGTGTCGTAACCAATCGGTTCGACCAGTTATTTGATGATGAAGAGGATCCGTTCGAGATATTAAAGCAGGCAGAAACCAAGAAGAAGGACGCGCCCGCCCCGGGGGCCGCCAAGAGCGCGGCTCAGGCTGCCAAGCAGCAGAAGAAAGAGTCCCAGAAAGACAGGAGAGCCCCTCTTCCAGACAAGAAAGAGGAGCCACAGGCGCCTGTTCCCCTGAAGAAGGAAGGCATGAGGCGAATGGGTCGCCGCCCAGAGCAGCAAGGTCAGCATGGTCAGCAGGGCTCCCAGCAGCATCAGGGGGGTCAGGGCGAGGGTCGGCCTCAGGGAGAAGGGAGGCCTCAGGGCGAGGGTCGGCCTCAGGGCGAGGGTCGGCCTCAGGGAGAGGGTCGGCCTCAGGGAGAAAGGCGGCCTGACAGGAGGCCTCCACGTGAGCGCAGACCGGACAGACCTGCTGATGAGAAGCCAGCTGAGGGCGGAGAGTTCTCTGTGGAAAAGACTGGTGGAGAGAGGCCATTCAGAGGTCGTGGAGGCGGCAGAGGTGGACGTGGAGGACGAGGCAGAGGTGTTGGCCGAAGTGATGGATTTGACGTGCGCGGCAAACGGGAATTTGACAGGCACAGCGGCAGTGATCGTTCCAGCCTGAAAGCAGAGGAGAAGCGAGGAGGCAGTGGATCTCACAACTGGGGTACTGTCAAGGATGAATTGAGTGAGCTTGACCAGTCAAATGTCACGGAGGACACCCATGAGGGAGAAGAGCACCCACCTGCTGACTCTGAGAACAAGGAAAATGAGGCTGAAGAGGTGAAAGAGGAGGAGCCTAAGGAAATGACTCTGGATGAATGGAAGGCCCAGCAGGATAAAGAGAGAGCCAAGGTCTCAGACTTCAAAATTCGTAAAGCCAACGAGGGAACTGACTGGAAGAAGGGGTTCCTGCTGCATAAATCTAAGGCCAAGGATGCTCCTGCTGATGATGAATCTGGTGATCACCACTTCCGTAAGCCAGCCAATGACATCACGTCCCAGCTGGAGATTAACTTTGGGGACCTTGGCCGCCCTGGACGTGGCCGTGGTGGCCAAcgtggaggaagaggaggccgtggagctgctgcagctgctgctgctgctggtggtggtggtggaatTGCAAGACCACCTCGTGAGCGCAGGCCAGATAAGgcaacCGGAGGTTCTGTCCCCGATGTGGATGACCCGGAGGCCTTCCCGGCCCTGGCTTAAGCTGCCGATTGGTAGCTATGATCAGCCATGCCACTGAGCCCCCTTCCCAGGGCCCTTCGCTACGAGGCTTGCATGCTAATGGATCCTTCAGCAGATGAAATGATGGAAGACTGTCATCCATCCCATTCACCCCCTGAGGACTGAATTTTActtgttttagaaaaaaaaggaaaaaatcttacaaaaaaaaggaaggacTTCTTGCTACTCAGAAGCAAATTATTGGTAGAGGTTTTGTATTCAGTATGAGGTAGCAGGGATGTTttcatacagtattttttttcagaggttATGCATTCTTCATGAATACTTTTTGTACTGCTGCTTGAAAATATGCGTTTCCAAATAGGTGTGAAGAGTGCATCAGTTGGCTTGTGGTGGCCCTTGGCTTGCTTTCTTCTTATGCCTTAGAcacactctcttcctctccttaGGGATCACTCACAGGTGTCTGCTCAGAATACCGGACTTTAAAGTGTTATGtctttaaaatgttgtgtacATTTTGGAGCGAGATTTGAAGTCCCTGTGTATACGGTAGGCTGTGTGTTTGGCCAGAGTAATACAGAGGTTAgcattcttttttgtctttctttgtaAGTTGAACTCTGGTTAGAAGTGCTAAACTCTGCAGGACTTTGGCTTGGAAGGAACCTGGTTTGTGAACCCTGCAGTAGGCCTTTAACAGATTCGATTATGATGTCTTGAATGAAGTAACAAGAAATTTAATTTGTAGCTTGATGCCAAAATATTTGATTATACCTTCATCATGGCTATTGATAATCCTCTGAAAAGAGTAGTCATATATCTCAAATGTGATGTTTGTAAAATGACCATTATGAGTGGTTTCTATTCACAATATTCAGGTTGCTCTGAGGATAATAATGCACTCATTTAATGCCCTAggagttttttcctttttttaagtcGAGTTTACACTGTGCACTCCTGTTTACTGATACCAATATGAAtaagttaatattttaatacagcaGTCtgtatttaaatcagttttaatttcaATATTTCACTTTCTGCCCCATTGCTTTGTAGAACAGCACTACTGCGTAGATGTCCTGAAAGAAATACTAGTTGTTCAATGTGGAACAACTGTGTGCTATGAAAATGTGTGAATTCTAACCCTGCTATTATTCAGACCTCTGTCCATAATTAAAAGATGGTCTATTCATA
>XM_007258356.3
CCACGCCGGAAGAGAAGCGAAAGTCTTTTTCCCAGCCATCTTGTGGCCTTTACTAGCGAGCTGTTCGCACCAAGCCTCGTAGAATCGGAGGAGAATCCTGCTGAAGGGGCGCCATCATGCCCGGACATCTGCAAGAAGGCTTCGGCTGTGTCGTAACCAATCGGTTCGACCAGTTATTTGATGATGAAGAGGATCCGTTCGAGATATTAAAGCAGGCAGAAACCAAGAAGAAGGACGCGCCCGCCCCGGGGGCCGCCAAGAGCGCGGCTCAGGCTGCCAAGCAGCAGAAGAAAGAGTCCCAGAAAGACAGGAGAGCCCCTCTTCCAGACAAGAAAGAGGAGCCACAGGCGCCTGTTCCCCTGAAGAAGGAAGGCATGAGGCGAATGGGTCGCCGCCCAGAGCAGCAAGGTCAGCATGGTCAGCAGGGCTCCCAGCAGCATCAGGGGGGTCAGGGCGAGGGTCGGCCTCAGGGAGAAGGGAGGCCTCAGGGCGAGGGTCGGCCTCAGGGCGAGGGTCGGCCTCAGGGAGAGGGTCGGCCTCAGGGAGAAAGGCGGCCTGACAGGAGGCCTCCACGTGAGCGCAGACCGGACAGACCTGCTGATGAGAAGCCAGCTGAGGGCGGAGAGTTCTCTGTGGAAAAGACTGGTGGAGAGAGGCCATTCAGAGGTCGTGGAGGCGGCAGAGGTGGACGTGGAGGACGAGGCAGAGGTGTTGGCCGAAGTGATGGATTTGACGTGCGCGGCAAACGGGAATTTGACAGGCACAGCGGCAGTGATCGTTCCCTGAAAGCAGAGGAGAAGCGAGGAGGCAGTGGATCTCACAACTGGGGTACTGTCAAGGATGAATTGAGTGAGCTTGACCAGTCAAATGTCACGGAGGACACCCATGAGGGAGAAGAGCACCCACCTGCTGACTCTGAGAACAAGGAAAATGAGGCTGAAGAGGTGAAAGAGGAGGAGCCTAAGGAAATGACTCTGGATGAATGGAAGGCCCAGCAGGATAAAGAGAGAGCCAAGGTCTCAGACTTCAAAATTCGTAAAGCCAACGAGGGAACTGACTGGAAGAAGGGGTTCCTGCTGCATAAATCTAAGGCCAAGGATGCTCCTGCTGATGATGAATCTGGTGATCACCACTTCCGTAAGCCAGCCAATGACATCACGTCCCAGCTGGAGATTAACTTTGGGGACCTTGGCCGCCCTGGACGTGGCCGTGGTGGCCAAcgtggaggaagaggaggccgtggagctgctgcagctgctgctgctgctggtggtggtggtggaatTGCAAGACCACCTCGTGAGCGCAGGCCAGATAAGgcaacCGGAGGTTCTGTCCCCGATGTGGATGACCCGGAGGCCTTCCCGGCCCTGGCTTAAGCTGCCGATTGGTAGCTATGATCAGCCATGCCACTGAGCCCCCTTCCCAGGGCCCTTCGCTACGAGGCTTGCATGCTAATGGATCCTTCAGCAGATGAAATGATGGAAGACTGTCATCCATCCCATTCACCCCCTGAGGACTGAATTTTActtgttttagaaaaaaaaggaaaaaatcttacaaaaaaaaggaaggacTTCTTGCTACTCAGAAGCAAATTATTGGTAGAGGTTTTGTATTCAGTATGAGGTAGCAGGGATGTTttcatacagtattttttttcagaggttATGCATTCTTCATGAATACTTTTTGTACTGCTGCTTGAAAATATGCGTTTCCAAATAGGTGTGAAGAGTGCATCAGTTGGCTTGTGGTGGCCCTTGGCTTGCTTTCTTCTTATGCCTTAGAcacactctcttcctctccttaGGGATCACTCACAGGTGTCTGCTCAGAATACCGGACTTTAAAGTGTTATGtctttaaaatgttgtgtacATTTTGGAGCGAGATTTGAAGTCCCTGTGTATACGGTAGGCTGTGTGTTTGGCCAGAGTAATACAGAGGTTAgcattcttttttgtctttctttgtaAGTTGAACTCTGGTTAGAAGTGCTAAACTCTGCAGGACTTTGGCTTGGAAGGAACCTGGTTTGTGAACCCTGCAGTAGGCCTTTAACAGATTCGATTATGATGTCTTGAATGAAGTAACAAGAAATTTAATTTGTAGCTTGATGCCAAAATATTTGATTATACCTTCATCATGGCTATTGATAATCCTCTGAAAAGAGTAGTCATATATCTCAAATGTGATGTTTGTAAAATGACCATTATGAGTGGTTTCTATTCACAATATTCAGGTTGCTCTGAGGATAATAATGCACTCATTTAATGCCCTAggagttttttcctttttttaagtcGAGTTTACACTGTGCACTCCTGTTTACTGATACCAATATGAAtaagttaatattttaatacagcaGTCtgtatttaaatcagttttaatttcaATATTTCACTTTCTGCCCCATTGCTTTGTAGAACAGCACTACTGCGTAGATGTCCTGAAAGAAATACTAGTTGTTCAATGTGGAACAACTGTGTGCTATGAAAATGTGTGAATTCTAACCCTGCTATTATTCAGACCTCTGTCCATAATTAAAAGATGGTCTATTCATA

Function

symbol description
serbp1 Enables SUMO binding activity; mRNA 3'-UTR binding activity; and ribosome binding activity. Involved in PML body organization. Located in cytosol and nucleus.

NR:

description
PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein isoform X1

GO:

id name namespace
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG:

id description
K13199 SERBP1; plasminogen activator inhibitor 1 RNA-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258355.3 True 2573 mRNA 0.49 8 40725657 40732566
XM_007258356.3 False 2570 mRNA 0.49 8 40725657 40732566

Neighbor

gene id symbol gene type direction distance location
hsd17b7 hsd17b7,LOC107551038,LOC107724130 coding upstream 7587 40710906 ~ 40718070 (+)
ddr2 ddr2,ddr2a,LOC107551036,LOC107692417,LOC107724144 coding upstream 15830 40658400 ~ 40709827 (+)
uap1 uap1,LOC107551035,LOC107724142 coding upstream 71846 40637785 ~ 40653811 (+)
c13h1orf226 nos1ap coding upstream 125362 40580376 ~ 40600295 (+)
nos1ap nos1ap,LOC107711121,LOC107551033 coding upstream 158519 40417327 ~ 40567138 (+)
LOC103042225 NA coding downstream 45079 40777645 ~ 40783201 (+)
slc35d1 slc35d1,slc35d1a,LOC108441641,LOC108272060,LOC107724140,LOC107758361,LOC107684099 coding downstream 53662 40786228 ~ 40797936 (+)
LOC103041612 LOC108440175 coding downstream 388560 41121126 ~ 41125571 (+)
tmem125 tmem125,LOC108440199,LOC107725195,LOC107684333,LOC107551025 coding downstream 461536 41194102 ~ 41216267 (+)
tie1 tie1,LOC107731644,LOC107684058 coding downstream 550285 41282851 ~ 41305229 (+)
G117156 NA non-coding upstream 95513 40624010 ~ 40630144 (+)
G117154 NA non-coding upstream 104891 40619568 ~ 40620766 (+)
G117152 NA non-coding upstream 145353 40567208 ~ 40580304 (+)
G117147 NA non-coding upstream 363080 40360340 ~ 40362577 (+)
G117111 NA non-coding upstream 588930 40129092 ~ 40136727 (+)
G117183 NA non-coding downstream 84610 40817176 ~ 40821330 (+)
G117299 NA non-coding downstream 358935 41091501 ~ 41091992 (+)
G117324 ap1m3,LOC108441657,LOC108271949,LOC103463064,LOC106528254,LOC107724146,LOC103137203 non-coding downstream 493609 41226175 ~ 41233853 (+)
LOC111193789 NA non-coding downstream 572757 41305323 ~ 41306911 (+)
G117370 NA non-coding downstream 599635 41332201 ~ 41335785 (+)
G116997 NA other upstream 1366269 39358871 ~ 39359388 (+)
LOC103036266 LOC108441345 other upstream 2331127 38390277 ~ 38394530 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 3113335 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 3604330 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 4011773 36657392 ~ 36713884 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 66905 40799471 ~ 40808545 (+)
fam183a NA other downstream 426621 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 620935 41353501 ~ 41367729 (+)
G117642 NA other downstream 1619241 42351807 ~ 42355784 (+)

Expression


Co-expression Network