LOC103040080 (LOC108440156)


Basic Information

Item Value
gene id LOC103040080
gene name LOC108440156
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 40360319 ~ 40363960 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258374.3
GATAGAGGAGGAGGCTGCACTAAGACTGTGAGGATCCTCTGTTCGAGCGACGTTAAACGCTTCTCTTTCTCTTGGTTGGATTTTTCTCACTCACTGCCAGCATGTGTAAGGGACTGGCTGCACTACCTGCGACCTGCCTGAAAAGCGCTAAAGACATAAAGCACAAGATCGGCTTCTTGCTTCAGAAACCTGAACCGGTTCAGGAGCAAAAGCTCGcgaaggaaaaagaaaaggagaaggCAACTGTGGTGAAAAGCATCGCTCCTGTTGAAGCTGAGAAATGGAAGACATCATTTAACAACTTGATTAAAAATGATGtTGGACGGGCCGCATTTACAGCCTTTTTGAAGTCGGAGTTCAGCCAGGAGAACATTGAGTTCTGGGAGGCTTGTGAGGACTTCAAGAGGACGCCTGCAAAACAGATGGAAGCCAAAGCCAAACAGATCTTTGAGCACTATGTCAGTGTCGACTCGCCAAAAGAGGTCAACCTGGACTCAGCAACAAGAGAAGAAACCAGGAGCAATCTGGAAAAGATTGACGCTAGCTGTTTTGAAGAAGCCCAAAACAAGATTTTCACACTGATGGAAAACGATTCGTACCGGCGCTTTCTGAGATCCAAATTGTTCCTTGACCTGTGCCATTCTCCCACAGATAAAAAGCCCTGCGGCCTGGAGAGAAAAGGCAACCTTCCCGAGTTCAGTCCGTTCCTCCTGCCTCACTGCGCTTAAGCTACGGTATCTACATATCTGAGAACCTGAGAAGAAAAGCTCCCTCTCAAGCTGACATTGGTGGACTAATTTCACTTCTTTGAGAAACAAAAAGCTGTTAGAGGCTTAAGCCAGCGCTTAACGAGCTCCATGACATACGAAGCAGACGCAATGGATGAAGATGCTCATTGATTGTTTTCTCAGCTGTGCTTTCTGGCTTTAAGTATTTTCACAGTTTGAGCAAATAATTCACTTCTGTTTCTCATCTTTACTGTTGTTGCAAGCaattttcaggtcattttacaATCAATAGGAAATAACACACTAAACAGCAAGATGAATAAGACACCTTCTAAAGCCCATCAGATATCAAAGTGGAAATACTATGAATAACCATGACTGAGTTTACAAACGAGTGACTGTTACAGATTGGAGAAAAGCAGGCGAGTGCAGTATCTGTGTTTAATCGATTTCATATGCGTTTCAGGCTTTCTGTGAGTGGAAGGACTGTGGTACACACAGTAAAAATACCACTGTTAAATCAACACCATTACACTAATAGTATTGATTTAACACTGAGCAGTGCTAAAGAAGGAACCCGtctaatacacacatatacacacaaagacacacacgcatcaacttcattttttttttcttttttatttttgatatagtGAGTTGACACATGCTAGTACATTTATTAAGAGTTGGGCATTTTCaaatgagcagaaaaaaaaaaaaaaaaaacatctggtcATTATAAATAAACCCTAAAGCAAAACGAATGTTATCTGTAAAGCTGTACTTACGCAATGTGATCCCGTCAGCTCGTCCTGCAGTGCTGTGAATCCTGTTAATGTTAATTCTGTCCTTCTCTTGTAATGTCACTTTCTTCATCTTTACTTATAAGAATAAATGGTTGTTTATATGCCGTTTACAGACTTGTTTACTGATACGTGTTAcacatatttattgtaatatttatgaataaaagaaaaaatgtctCACTCAAAAA
>XR_002650725.1
GATAGAGGAGGAGGCTGCACTAAGACTGTGAGGATCCTCTGTTCGAGCGACGTTAAACGCTTCTCTTTCTCTTGGTTGGATTTTTCTCACTCACTGCCAGCATGTGTAAGGGACTGGCTGCACTACCTGCGACCTGCCTGAAAAGCGCTAAAGACATAAAGCACAAGATCGGCTTCTTGCTTCAGAAACCTGAACCGGTTCAGGAGCAAAAGCTCGcgaaggaaaaagaaaaggagaaggCAACTGTGGTGAAAAGCATCGCTCCTGTTGAAGCTGAGAAATGGAAGACATCATTTAACAACTTGATTAAAAATGATGtTGGACGGGCCGCATTTACAGCCTTTTTGAAGTCGGAGTTCAGCCAGGAGAACATTGAGTTCTGGGAGGCTTGTGAGGACTTCAAGAGGACGCCTGCAAAACAGATGGAAGCCAAAGCCAAACAGATCTTTGAGCACTATGTCAGTGTCGACTCGCCAAAAGAGGTCAACCTGGACTCAGCAACAAGAGAAGAAACCAGGAGCAATCTGGAAAAGATTGACGCTAGCTGTTTTGAAGAAGCCCAAAACAAGATTTTCACACTGATGGAAAACGATTCGTACCGGCGCTTTCTGAGATCCAAATTGTTCCTTGACCTGTGCCATTCTCCCACAGATAAAAAGCCCTGCGGCCTGGAGAGAAAAGGCAACCTTCCCGAGTTCAGTCCGTTCCTCCTGCCTCACTGCGCTTAAGCTACGGTATCTACATATCTGAGAACCTGAGAAGAAAAGCTCCCTCTCAAGCTGACATTGGTGGACTAATTTCACTTCTTTGAGAAACAAAAAGCTGTTAGAGGCTTAAGCCAGCGCTTAACGAGCTCCATGACATACGAAGCAGACGCAATGGATGAAGATGCTCATTGATTGTTTTCTCAGCTGTGCTTTCTGGCTTTAAGTATTTTCACAGTTTGAGCAAATAATTCACTTCTGTTTCTCATCTTTACTGTTGTTGCAAGCaattttcaggtcattttacaATCAATAGGAAATAACACACTAAACAGCAAGATGAATAAGACACCTTCTAAAGCCCATCAGATATCAAAGTGGAAATACTATGAATAACCATGACTGAGTTTACAAACGAGTGACTGTTACAGATTGGAGAAAAGCAGGCGAGTGCAGTATCTGTGTTTAATCGATTTCATATTTAACACTGAGCAGTGCTAAAGAAGGAACCCGtctaatacacacatatacacacaaagacacacacgcatcaacttcattttttttttcttttttatttttgatatagtGAGTTGACACATGCTAGTACATTTATTAAGAGTTGGGCATTTTCaaatgagcagaaaaaaaaaaaaaaaaaacatctggtcATTATAAATAAACCCTAAAGCAAAACGAATGTTATCTGTAAAGCTGTACTTACGCAATGTGATCCCGTCAGCTCGTCCTGCAGTGCTGTGAATCCTGTTAATGTTAATTCTGTCCTTCTCTTGTAATGTCACTTTCTTCATCTTTACTTATAAGAATAAATGGTTGTTTATATGCCG

Function

NR:

description
PREDICTED: regulator of G-protein signaling 4-like

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0007626 locomotory behavior biological_process
GO:0007409 axonogenesis biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258374.3 True 1725 mRNA 0.41 5 40360319 40363960
XR_002650725.1 False 1552 misc_RNA 0.42 6 40360401 40363960

Neighbor

gene id symbol gene type direction distance location
LOC111193786 NA coding downstream 1077404 39271790 ~ 39282915 (-)
lnp1 lnp1 coding downstream 1335157 39013038 ~ 39025162 (-)
LOC103031712 tmem45a,LOC107685333 coding downstream 1348565 39002702 ~ 39011754 (-)
LOC103032030 zgc:110788,LOC108440097,LOC107711028,LOC107673477,LOC107726515,LOC107585211,LOC107580362 coding downstream 1360154 38996878 ~ 39000165 (-)
LOC111193785 NA coding downstream 1379174 38978736 ~ 38981145 (-)
uhmk1 uhmk1,LOC107692420 coding upstream 255522 40619482 ~ 40636689 (-)
LOC103034848 NA coding upstream 391388 40755348 ~ 40777657 (-)
LOC103032504 ap1m3,LOC108441657,LOC107724146,LOC107684323,LOC108271949,LOC107692442,LOC106528254 coding upstream 860881 41224841 ~ 41249611 (-)
c13h1orf210 NA coding upstream 887057 41251017 ~ 41260579 (-)
orc1 orc1,LOC107725193,LOC105913168,LOC104957406 coding upstream 960762 41324722 ~ 41335529 (-)
G117207 NA non-coding downstream 19841 40337761 ~ 40340478 (-)
G117120 NA non-coding downstream 190114 40169837 ~ 40170205 (-)
G117115 NA non-coding downstream 223633 40129216 ~ 40136686 (-)
G117107 NA non-coding downstream 288402 40071596 ~ 40071917 (-)
G117103 NA non-coding downstream 321841 40038117 ~ 40038478 (-)
G117217 LOC103358909,LOC107711121,LOC107551033 non-coding upstream 54311 40418271 ~ 40512239 (-)
G117232 nos1ap non-coding upstream 231092 40595052 ~ 40600261 (-)
G117235 NA non-coding upstream 250239 40614199 ~ 40614416 (-)
G117223 NA non-coding upstream 260377 40624337 ~ 40626142 (-)
G117239 uap1,LOC107551035 non-coding upstream 278988 40642948 ~ 40650103 (-)
LOC103028549 NA other downstream 1069291 39284217 ~ 39291028 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 1396625 38953162 ~ 38963694 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other downstream 1460873 38630637 ~ 38899446 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other downstream 1975721 38381270 ~ 38384598 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other downstream 2111695 38233474 ~ 38248624 (-)
LOC103034527 NA other upstream 367336 40731296 ~ 40769682 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other upstream 452173 40816133 ~ 41017814 (-)

Expression


Co-expression Network