LOC103040699 (LOC103040699,LOC108440142,LOC108271632)


Basic Information

Item Value
gene id LOC103040699
gene name LOC103040699,LOC108440142,LOC108271632
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 40273386 ~ 40276489 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258376.3
CTCTCTATAAACCAGACCGCTGATAAACTCTCACTAAAGACAGCACCACTCAAAGGATATTTCTCACTTTTTTGGGGTTTTACAATGTGCAGAGGACTCGCAGCACTGCCAAACACCTGCCTGGAAAGGGCTAAAGGATTAAAAGCACGCGTGAGCAGCTTTCTGGACTGGAGACTGCTGTGCTACGCCTACAAACTGAGGAAACCAAGCCTGACCTTTGAGGAATGTCTGAGGTGGAAAGAGTCGTTTGAAAAGCTCCTGTCCAGCAAacATGGACTCTATGCCTTCCGAGCTTTTCTGGTGTCTGAATTCAGCGAGGAGAACATCGCCTTCTACCTGGCCTGTGAGAACTACAGGCGCACCAAGTCTCCAGCCAAGCTCCGCTCCAAAGCCCAGAGGATTTACAACGAGTTCATCGGGAGTGAAGCGCCGAGAGAGGTTAACATTGACCACGAGACTCGAGACATCACACAAGCTAACGTGAAGTGTCCCACAGCAAGCTGCTTCGACTCGGCGCAGTACCGCATCTACATCCTGATGGAGAAAGACTGCTACCCACGATTCCTCCGCTCATCAGCATACCGGGACCTGCTCAGCCAGTTAGCCAAGAAGAACGCTAAAGCTGCCACCAAAAAAGCCTGAAGGACCTTCAATCTCCAGGACCGGAAAGGAGCCTAAAAGAAGGGGAGAGCTGAAGTTATGGAAGGGCGTGTCCGTCTGATGAAGGAAGAAGGTCCAGGCAGCGAGTTGGGATCAGTATCGATCCACCAACAGCACAGGAGGCCTGGAATTGATGAAGGACACGGCAGAGTTCAAGGTTATGAAGAGAAccatgagagaaagagagagctgggAGAAGATTATACCACACAGATCTAACACACACAATTGTGCCCCACTGATGGAATCAAGTGGATTTGAATAACCTGGGATTACTGAGGAGATTAAAGAGTTTTAGAGAGAGGACTGTGAAGCACCTACACTaagttagaaaaatatatagaaaaaatgacagaaaaagaCAATCTGGTGGAAACACACCAAACTTACCAACTTAAATATGAACAtagacttttttattattattaaaactgtattaaaaaaaaaaaaccttaattttcatttatttattaattaatttatttatttccttttttttctttttttcccactTGCAATCTGCTGTTACACTGCTGTATCGTCTGTGAGAGGATGCGTGcaatgatatatgttttttttttttttcgtttcaaCTTTCTGTACTCTGTCAAACaaatattatgtaaataaatcttTGGTTCAGA

Function

NR:

description
regulator of G-protein signaling 16-like

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258376.3 True 1304 mRNA 0.44 5 40273386 40276489

Neighbor

gene id symbol gene type direction distance location
LOC103027818 rgs8,LOC108441527,LOC108271678,LOC107711118,LOC107551030,LOC107732448,LOC107564081 coding upstream 14167 40224051 ~ 40259219 (+)
LOC103028032 brinp3a.1,LOC108441513,LOC107585174,LOC107711117,LOC107732447,LOC107685317 coding upstream 263850 39954473 ~ 40009536 (+)
LOC103022251 brinp3a.2,LOC108440126,LOC107711116,LOC107732449,LOC107685312,LOC107667973,LOC107585215 coding upstream 679363 39517500 ~ 39594023 (+)
hes1 hes1,her6,LOC107711114,LOC107680502,LOC107722674,LOC107685314,LOC107582845 coding upstream 1061563 39209814 ~ 39211823 (+)
opa1 opa1,LOC107711112,LOC107582739,LOC107673572,LOC107585173 coding upstream 1192275 39032127 ~ 39081111 (+)
LOC103040381 rgs5a,LOC108441543,LOC107732440,LOC107564083,LOC107685321,LOC107684230 coding downstream 42269 40318758 ~ 40339674 (+)
nos1ap nos1ap,LOC107711121,LOC107551033 coding downstream 140838 40417327 ~ 40567138 (+)
c13h1orf226 nos1ap coding downstream 303887 40580376 ~ 40600295 (+)
uap1 uap1,LOC107551035,LOC107724142 coding downstream 361296 40637785 ~ 40653811 (+)
ddr2 ddr2,ddr2a,LOC107551036,LOC107692417,LOC107724144 coding downstream 381911 40658400 ~ 40709827 (+)
G117111 NA non-coding upstream 136659 40129092 ~ 40136727 (+)
G117108 NA non-coding upstream 181542 40091595 ~ 40091844 (+)
G117102 NA non-coding upstream 235855 40037300 ~ 40037531 (+)
G117071 NA non-coding upstream 425551 39839012 ~ 39847835 (+)
G117025 NA non-coding upstream 775028 39497799 ~ 39498358 (+)
G117147 NA non-coding downstream 83851 40360340 ~ 40362577 (+)
G117152 NA non-coding downstream 290719 40567208 ~ 40580304 (+)
G117154 NA non-coding downstream 343079 40619568 ~ 40620766 (+)
G117156 NA non-coding downstream 347521 40624010 ~ 40630144 (+)
G117183 NA non-coding downstream 540687 40817176 ~ 40821330 (+)
G116997 NA other upstream 913998 39358871 ~ 39359388 (+)
LOC103036266 LOC108441345 other upstream 1878856 38390277 ~ 38394530 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 2661064 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 3152059 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 3559502 36657392 ~ 36713884 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 522982 40799471 ~ 40808545 (+)
fam183a NA other downstream 882698 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 1077012 41353501 ~ 41367729 (+)
G117642 NA other downstream 2075318 42351807 ~ 42355784 (+)

Expression


Co-expression Network