LOC103041612 (LOC108440175)


Basic Information

Item Value
gene id LOC103041612
gene name LOC108440175
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 41121126 ~ 41125571 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258379.3
GTATCccagttgattttttttctttgttttgagTGGAAAACAGACATCCATCATCCTGTGTTTACTGAGGCACAGGCATGAGCCCAGGCGTTGGCGCCTTTTTTCCTTCAGggttttaaccaatcagcgTTAACACGAGCGCATGGGCGGGGCTTAGGCGCCCAGATACTCCCCAAAACCTGCGTGACGCTGAGAGTCACTGCTGCTGGTTAAAAACGGAGCCGAGGGGCAAAATGAGCTCAAACTCTTATAGGCAGCCAACTCTCACCTGGAGAGGCTTTAGAGTCCTGCAGGTGAGCTCCAGGCAGGTGAAAGACAGAGCTGTGTTTCATTCCTGTGTATGGTTTAATTTGAGGCTGTAAAGTTCAGTAATGCCGGAAATTAGGAGCTTTATCTGCGTTAACTCCGTATAAACTTAAAGTTAACAGCCACACCAAAgcccccagcagcagcagccgctcCGCTGTTCTACAGATGAGCGCTGAAGTGGAGGCAGACCTGCGGGCGCAGCTGCTGAACCGCAGGCAGGACGGAGGTGAAGATGAGGAggtggagcaggaggaggaggagatagACGTGGAGACCGTGGAGGTGAAGCGCAGGCCGAGCCGGAGCCCGAAGTGCGCGCGCTGCCGGAACCACGGCGTCGTGTCTCGCCTCAAGGGCCACAAGCGGCTGTGCCGGTGGCGGGACTGCCGCTGTGCCAACTGTGCTCTGGTGGTGGAGAGGCAGCGCGTGATGGCCGCGCAGGTGGCCCTCAGGAGGCAGCAGGCGGCCGAGGGTAAGAAAAGCCAGAGAAGCGCTTCTTTTCTCAGACGCTCAGCATACCAGTGCTACAGCAGGGCACCCAGTCTCCTGGCAAAGAGCATTCTGGAGGGCTACACACCACCAGTGCTGGAGGACTGGCCAAAGAGACTTCACTATCCTCCACTGAGTGTaaggatgaggaagaggagagcTTTTGCTGATAAAGAGCTCGAGAATGTGATGCTGGAGCGAGagctgagacagagagagatggaggagctTCCTGAACTCGTCTTCCTTCAGGCCACCGTATCTCCTGCTCCATCGCCATGCTTCTGCCCACTGTCTGACCCCAGCCCAGCCAGCCTCTTGCCCATTTACAAATCCAGGCCTCTGCTGTTTGAGTGTGAtctccactgccacacacaggAGTTCAAATCCAAGAGTGTAGAGCAGTGTCACAGGGACGTCCTTACACAAAGCTGTGTTCTTCGTACAGCAACCAAAAGCTGGGAACTTTGCAGTGACAGGGACTCATGCCTGGAATCCTTTCCACTGCCCTCATTTCAAAGCTCTCACTATTATTGCAGTGAAAACTCAGGTGTCAACACAGAAAGGAGCATGCTAGAAAATGGCACTGCTGACTCGTCTAGCGCCGTGCCAAAAAGTGTTTCTGCTGACAGATTGGATATCACGTCAAAGCGAGATGGTGCCCTTTCTCTGATTGAGGCAAAGGTGCTGTCACAGGCTGAGCTGCCAGATAAACACTGCAGGGCACCAGGGCTCGAAAAGCTCACACACAAAGACTGGGCCGCTGAAAGAAACCCCATTAAAAATTCCAATGCACGGCCTTTACCCTTTTCTGTAGAGGCATTGCTGATGAGATGATAAAAGAGCTTCTCTATAGAATtcactttttgcatttttctcatGCTATGCAATAGAagaatgtatattattttaaaacaaaatatcttTTGACTGTATGTTAACATCCTTTTTGGTGTTTATAATTCTAATTGTCTGGCATttcaaatgaaatatttttgtagttttatttatttttttattatacacctTTTTATCTTGTATTCATACAAAAGCCTTTTTAACATGTATGCCCAAGTGTTTTCTAATTAAATATGTGCTGTGTACACTAACAGTGTTGCTtgtctgtataaatatatatttatagacagTATCgtataaatacttatatatgTAAGTTTAATTGGCTGTTTTtgttactgttattttactatgcattgtaatatttaccACCCAGACACACCCAGACTACATTTACGCAGCAGGCTtagtcttttaaaggctgttctattttttaaaagaacctTATAAAAGAAGAGCCCTGCAATGGGAAGCAGCTTAGCATAACACAGAGAATAAGACATGAAGAAGAAATagctacatttatttttgcatcatact

Function

NR:

description
PREDICTED: uncharacterized protein LOC108440175

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258379.3 True 2196 mRNA 0.47 3 41121126 41125571

Neighbor

gene id symbol gene type direction distance location
slc35d1 slc35d1,slc35d1a,LOC108441641,LOC108272060,LOC107724140,LOC107758361,LOC107684099 coding upstream 323190 40786228 ~ 40797936 (+)
LOC103042225 NA coding upstream 337925 40777645 ~ 40783201 (+)
LOC103035173 serbp1,LOC107594603,LOC107758366,LOC107692416 coding upstream 388560 40725657 ~ 40732566 (+)
hsd17b7 hsd17b7,LOC107551038,LOC107724130 coding upstream 403056 40710906 ~ 40718070 (+)
ddr2 ddr2,ddr2a,LOC107551036,LOC107692417,LOC107724144 coding upstream 411299 40658400 ~ 40709827 (+)
tmem125 tmem125,LOC108440199,LOC107725195,LOC107684333,LOC107551025 coding downstream 68531 41194102 ~ 41216267 (+)
tie1 tie1,LOC107731644,LOC107684058 coding downstream 157280 41282851 ~ 41305229 (+)
mpl NA coding downstream 183005 41308576 ~ 41323618 (+)
prpf38a prpf38a coding downstream 217851 41343422 ~ 41347799 (+)
pik3r3 pik3r3,LOC107692397,LOC107717145,LOC107594617,LOC106584012,LOC107556985 coding downstream 360890 41486461 ~ 41801791 (+)
G117299 NA non-coding upstream 29134 41091501 ~ 41091992 (+)
G117183 NA non-coding upstream 299796 40817176 ~ 40821330 (+)
G117156 NA non-coding upstream 490982 40624010 ~ 40630144 (+)
G117154 NA non-coding upstream 500360 40619568 ~ 40620766 (+)
G117152 NA non-coding upstream 540822 40567208 ~ 40580304 (+)
G117324 ap1m3,LOC108441657,LOC108271949,LOC103463064,LOC106528254,LOC107724146,LOC103137203 non-coding downstream 100604 41226175 ~ 41233853 (+)
LOC111193789 NA non-coding downstream 179752 41305323 ~ 41306911 (+)
G117370 NA non-coding downstream 206630 41332201 ~ 41335785 (+)
G117379 NA non-coding downstream 225380 41350951 ~ 41352350 (+)
G117474 NA non-coding downstream 653380 41778951 ~ 41784207 (+)
LOC103033994 LOC103033994,LOC108441647 other upstream 312581 40799471 ~ 40808545 (+)
G116997 NA other upstream 1761738 39358871 ~ 39359388 (+)
LOC103036266 LOC108441345 other upstream 2726596 38390277 ~ 38394530 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 3508804 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 3999799 37100014 ~ 37121327 (+)
fam183a NA other downstream 33616 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 227930 41353501 ~ 41367729 (+)
G117642 NA other downstream 1226236 42351807 ~ 42355784 (+)

Expression


Co-expression Network