LOC103042225


Basic Information

Item Value
gene id LOC103042225
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 40777645 ~ 40783201 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258381.3
GCCCGTCTCCATGGTGAGGTCCCGCGGCGTGTCTGTACCTGAGCGGCCGGTGTTTACGGAGCTGAGCTGTGAGAGAGCCTGCGGCCCAGCCTGGAGCTGTTTATACAGGCTTTAGTGAAGACAACAGGAATATAGGGTCTGAACAGGAGCTCCACAGCGCTGAGTGAGTCAGCAGATAAACTTGAGCTAAAGGATGATGACCAGAATCCCTCAGTGTCTTGAATGCTTACTGGAGGATAGTGTGAGAGAGACGTGGTACACTTTTCTAAATGCCTCTTGCATGAAGAGTGATTGAATTTGCCCAACAGTTAAACCACATATAGTCATCATTCTGCATCCTGTACAAATCGTCCCTTTGATTTTAGAATAACGAATAACTAAGTGTCCCAAGGCATAAGGAGAACAAAGTCATGGAGCAGGCCTATGATTCAGACTTGATCAGTTGCAGAGCATCTTTCTGTAAGCCCACATCCAGGACTGAACATGTGGTTGAGGGACAAGACAACCTTTCTAAAAGGCTGAGgtTTTTAAAGTCTTCTGCCCCGGCAACCAGCATTAAAGGAAGCTCCGGCAGTAAATCAGGGGAGGTTATCAGTAATGTAATTAACATATGTCCTTTTACAAGCAATGATAACTTGCTGTGCTGGACAAATCTGACTTCAACAGGAAACTCCAAATACCAAGagaaacagggaATGAGCTTCATAATCACATCTTTAAACAATCCACAGTCACTTCGACCTTACAGGCGATCTCCACGCAGAATGAACTGGTCAAAAGAGGTGGAGAACATACCTTCCTTGTATACACTGAACAAGGACAGTAGAAATGCCTGTGGAGCAATGGGTAGCAGCCTTGGATACACTGACACCTCTCATTGGTGCTCTCACTCCAGCTCAATAGATAATGGTGTGCCATACAGCTCATCTACCTGGACCTCTGAAGagaataGACAACTTAAATTAACTGGATTATCTGATGTGGAAAGTAATGTCCCCAAAATTGGCACCAGCATGTCTAAACAAAGggtggaggagaacaaagaGTTTGCCCAAGAGCAGGTATCTTCATTTGAAGAGGAAACACTCCGTGAGCTGGTTTCTCTTAGCTTTGAAGATGAGCTGAAGAGGAAAAGTGTGAAAATGCTCACACCTTACCCTGCATCTGTTTATAAAGCCTTGCCGATAGTCAGTGAAACATATCCAGTGGTGTACAGAGCTCAGCAACCTCAACATGAGCCCTTTAAAAGCCCAGGATTTCACTCTTTGGATCCCTCTGAACCGTTGACCCAAGACGCTGAAGTCCGACAGAGCAAGGTCTACCCAGCCATCTTCCACATTACTGAGTCTATGCAGACAGACTACATGCTGCGCAATCTGAGAGGAAAGCATATAAGTGAAGACCTTCAGTGTTCAAGGCCTGATCTAGAATCACCTCTCAGTGTAAAGAGGGCAGGGGCCTATCATCTCAACCTGTGCATGCTCTCAGCAGATGGAAATGTGGTCAAGTCTTCCAACCTGGGCCGACTTCCTATCCATAAGTATACATCTGTGTCTAAACCTATAGGTAAAAGTACACAAAGTCCTCTGATTGTGCCTAAAAAGAAAGAGCTCTTATCTACTTGTGTTGGTCCTGTCATTAACGGCAAAAACCCCAAAATCACTCATGACCCCAGAACTATATTCTCAGCCTATTCTAAACCACTGCATGACTCCCCAAGGAGAAGCTTAAGCAGCAGATGTAACACCTCAGCCACACAGTCGCAGCGGCCTATAGCCAGCAATCCAAGAAACAAGACAGACTTTGTAATAATCTCAAAACCAGTCAAGTACAGTCAAAACAAATTGAAAGACTTCACCAAAGAACACACATCTAAGGAAAACTTCTCCAAGGAACCAACAGAGCTGTATGAAAACCCTGTTTCACAGTCAGGTGTCTGTGACACTTTTGAAGCTCATGAGATGAGCTCTTTCTCACAAACCAGCGATGAAGACCACAGACTCCAAGACTCTACAAGTCAAAAAAATGAAGCCGTGGTCACTGATCACACTGACAATGAGGCCTTTAACAAGCTGAGTTATTCTCTGCATAGTTCTAAGACCATAATAAAAATTCCAACTGCTGAAAATGTGGACTAAAGgagcataaagtgctgtttaACTTATAAAGCAATATTTCGGTCATGAAACCATCCTAAAACAGCTTTACAAGATTTGGATTTCCTGAAGGCTAGAAAACCAGAAATACAACATGTACAAAATAagcattttgtgattttttttcataagtGTTTTGAAACATTTCAGCCCTTGAGTGATCCTTGTAGAGCAAATGAATCTGgtgattttatatatgta
>XM_015608135.2
TGTAATTAACATATGTCCTTTTACAAGCAATGATAACTTGCTGTGCTGGACAAATCTGACTTCAACAGGAAACTCCAAATACCAAGaaacagggaATGAGCTTCATAATCACATCTTTAAACAATCCACAGTCACTTCGACCTTACAGGCGATCTCCACGCAGAATGAACTGGTCAAAAGAGGTGGAGAACATACCTTCCTTGTATACACTGAACAAGGACAGTAGAAATGCCTGTGGAGCAATGGGTAGCAGCCTTGGATACACTGACACCTCTCATTGGTGCTCTCACTCCAGCTCAATAGATAATGGTGTGCCATACAGCTCATCTACCTGGACCTCTGAAGagaataGACAACTTAAATTAACTGGATTATCTGATGTGGAAAGTAATGTCCCCAAAATTGGCACCAGCATGTCTAAACAAAGggtggaggagaacaaagaGTTTGCCCAAGAGCAGGTATCTTCATTTGAAGAGGAAACACTCCGTGAGCTGGTTTCTCTTAGCTTTGAAGATGAGCTGAAGAGGAAAAGTGTGAAAATGCTCACACCTTACCCTGCATCTGTTTATAAAGCCTTGCCGATAGTCAGTGAAACATATCCAGTGGTGTACAGAGCTCAGCAACCTCAACATGAGCCCTTTAAAAGCCCAGGATTTCACTCTTTGGATCCCTCTGAACCGTTGACCCAAGACGCTGAAGTCCGACAGAGCAAGGTCTACCCAGCCATCTTCCACATTACTGAGTCTATGCAGACAGACTACATGCTGCGCAATCTGAGAGGAAAGCATATAAGTGAAGACCTTCAGTGTTCAAGGCCTGATCTAGAATCACCTCTCAGTGTAAAGAGGGCAGGGGCCTATCATCTCAACCTGTGCATGCTCTCAGCAGATGGAAATGTGGTCAAGTCTTCCAACCTGGGCCGACTTCCTATCCATAAGTATACATCTGTGTCTAAACCTATAGGTAAAAGTACACAAAGTCCTCTGATTGTGCCTAAAAAGAAAGAGCTCTTATCTACTTGTGTTGGTCCTGTCATTAACGGCAAAAACCCCAAAATCACTCATGACCCCAGAACTATATTCTCAGCCTATTCTAAACCACTGCATGACTCCCCAAGGAGAAGCTTAAGCAGCAGATGTAACACCTCAGCCACACAGTCGCAGCGGCCTATAGCCAGCAATCCAAGAAACAAGACAGACTTTGTAATAATCTCAAAACCAGTCAAGTACAGTCAAAACAAATTGAAAGACTTCACCAAAGAACACACATCTAAGGAAAACTTCTCCAAGGAACCAACAGAGCTGTATGAAAACCCTGTTTCACAGTCAGGTGTCTGTGACACTTTTGAAGCTCATGAGATGAGCTCTTTCTCACAAACCAGCGATGAAGACCACAGACTCCAAGACTCTACAAGTCAAAAAAATGAAGCCGTGGTCACTGATCACACTGACAATGAGGCCTTTAACAAGCTGAGTTATTCTCTGCATAGTTCTAAGACCATAATAAAAATTCCAACTGCTGAAAATGTGGACTAAAGgagcataaagtgctgtttaACTTATAAAGCAATATTTCGGTCATGAAACCATCCTAAAACAGCTTTACAAGATTTGGATTTCCTGAAGGCTAGAAAACCAGAAATACAACATGTACAAAATAagcattttgtgattttttttcataagtGTTTTGAAACATTTCAGCCCTTGAGTGATCCTTGTAGAGCAAATGAATCTGgtgattttatatatgta
>XM_022675833.1
GCCCGTCTCCATGGTGAGGTCCCGCGGCGTGTCTGTACCTGAGCGGCCGGTGTTTACGGAGCTGAGCTGTGAGAGAGCCTGCGGCCCAGCCTGGAGCTGTTTATACAGGCTTTAGTGAAGACAACAGGAATATAGGGTCTGAACAGGAGCTCCACAGCGCTGAGTGAGTCAGCAGATAAACTTGAGCTAAAGGATGATGACCAGAATCCCTCAGTGTCTTGAATGCTTACTGGAGGATAGTGTGAGAGAGACGTGGTACACTTTTCTAAATGCCTCTTGCATGAAGAGTGATTGAATTTGCCCAACAGTTAAACCACATATAGTCATCATTCTGCATCCTGTACAAATCGTCCCTTTGATTTTAGAATAACGAATAACTAAGTGTCCCAAGGCATAAGGAGAACAAAGTCATGGAGCAGGCCTATGATTCAGACTTGATCAGTTGCAGAGCATCTTTCTGTAAGCCCACATCCAGGACTGAACATGTGGTTGAGGGACAAGACAACCTTTCTAAAAGGCTGAGgtTTTTAAAGTCTTCTGCCCCGGCAACCAGCATTAAAGGAAGCTCCGGCAGTAAATCAGGGGAGGTTATCAGTAATGTAATTAACATATGTCCTTTTACAAGCAATGATAACTTGCTGTGCTGGACAAATCTGACTTCAACAGGAAACTCCAAATACCAAGagaaaaagaaacagggaATGAGCTTCATAATCACATCTTTAAACAATCCACAGTCACTTCGACCTTACAGGCGATCTCCACGCAGAATGAACTGGTCAAAAGAGGTGGAGAACATACCTTCCTTGTATACACTGAACAAGGACAGTAGAAATGCCTGTGGAGCAATGGGTAGCAGCCTTGGATACACTGACACCTCTCATTGGTGCTCTCACTCCAGCTCAATAGATAATGGTGTGCCATACAGCTCATCTACCTGGACCTCTGAAGagaataGACAACTTAAATTAACTGGATTATCTGATGTGGAAAGTAATGTCCCCAAAATTGGCACCAGCATGTCTAAACAAAGggtggaggagaacaaagaGTTTGCCCAAGAGCAGGTATCTTCATTTGAAGAGGAAACACTCCGTGAGCTGGTTTCTCTTAGCTTTGAAGATGAGCTGAAGAGGAAAAGTGTGAAAATGCTCACACCTTACCCTGCATCTGTTTATAAAGCCTTGCCGATAGTCAGTGAAACATATCCAGTGGTGTACAGAGCTCAGCAACCTCAACATGAGCCCTTTAAAAGCCCAGGATTTCACTCTTTGGATCCCTCTGAACCGTTGACCCAAGACGCTGAAGTCCGACAGAGCAAGGTCTACCCAGCCATCTTCCACATTACTGAGTCTATGCAGACAGACTACATGCTGCGCAATCTGAGAGGAAAGCATATAAGTGAAGACCTTCAGTGTTCAAGGCCTGATCTAGAATCACCTCTCAGTGTAAAGAGGGCAGGGGCCTATCATCTCAACCTGTGCATGCTCTCAGCAGATGGAAATGTGGTCAAGTCTTCCAACCTGGGCCGACTTCCTATCCATAAGTATACATCTGTGTCTAAACCTATAGGTAAAAGTACACAAAGTCCTCTGATTGTGCCTAAAAAGAAAGAGCTCTTATCTACTTGTGTTGGTCCTGTCATTAACGGCAAAAACCCCAAAATCACTCATGACCCCAGAACTATATTCTCAGCCTATTCTAAACCACTGCATGACTCCCCAAGGAGAAGCTTAAGCAGCAGATGTAACACCTCAGCCACACAGTCGCAGCGGCCTATAGCCAGCAATCCAAGAAACAAGACAGACTTTGTAATAATCTCAAAACCAGTCAAGTACAGTCAAAACAAATTGAAAGACTTCACCAAAGAACACACATCTAAGGAAAACTTCTCCAAGGAACCAACAGAGCTGTATGAAAACCCTGTTTCACAGTCAGGTGTCTGTGACACTTTTGAAGCTCATGAGATGAGCTCTTTCTCACAAACCAGCGATGAAGACCACAGACTCCAAGACTCTACAAGTCAAAAAAATGAAGCCGTGGTCACTGATCACACTGACAATGAGGCCTTTAACAAGCTGAGTTATTCTCTGCATAGTTCTAAGACCATAATAAAAATTCCAACTGCTGAAAATGTGGACTAAAGgagcataaagtgctgtttaACTTATAAAGCAATATTTCGGTCATGAAACCATCCTAAAACAGCTTTACAAGATTTGGATTTCCTGAAGGCTAGAAAACCAGAAATACAACATGTACAAAATAagcattttgtgattttttttcataagtGTTTTGAAACATTTCAGCCCTTGAGTGATCCTTGTAGAGCAAATGAATCTGgtgattttatatatgta
>XM_022675834.1
GCGGCGTGTCTGTACCTGAGCGGCCGGTGTTTACGGAGCTGAGCTGTGAGAGAGCCTGCGGCCCAGCCTGGAGCTGTTTATACAGGCTTTAGTGAAGACAACAGGAATATAGGGTCTGAACAGGAGCTCCACAGCGCTGAGTGAGTCAGCAGATAAACTTGAGCTAAAGGATGATGACCAGAATCCCTCAGTGTCTTGAATGCTTACTGGAGGATAGTGTGAGAGAGACGTGAATAACGAATAACTAAGTGTCCCAAGGCATAAGGAGAACAAAGTCATGGAGCAGGCCTATGATTCAGACTTGATCAGTTGCAGAGCATCTTTCTGTAAGCCCACATCCAGGACTGAACATGTGGTTGAGGGACAAGACAACCTTTCTAAAAGGCTGAGgtTTTTAAAGTCTTCTGCCCCGGCAACCAGCATTAAAGGAAGCTCCGGCAGTAAATCAGGGGAGGTTATCAGTAATGTAATTAACATATGTCCTTTTACAAGCAATGATAACTTGCTGTGCTGGACAAATCTGACTTCAACAGGAAACTCCAAATACCAAGagaaaaagaaacagggaATGAGCTTCATAATCACATCTTTAAACAATCCACAGTCACTTCGACCTTACAGGCGATCTCCACGCAGAATGAACTGGTCAAAAGAGGTGGAGAACATACCTTCCTTGTATACACTGAACAAGGACAGTAGAAATGCCTGTGGAGCAATGGGTAGCAGCCTTGGATACACTGACACCTCTCATTGGTGCTCTCACTCCAGCTCAATAGATAATGGTGTGCCATACAGCTCATCTACCTGGACCTCTGAAGagaataGACAACTTAAATTAACTGGATTATCTGATGTGGAAAGTAATGTCCCCAAAATTGGCACCAGCATGTCTAAACAAAGggtggaggagaacaaagaGTTTGCCCAAGAGCAGGTATCTTCATTTGAAGAGGAAACACTCCGTGAGCTGGTTTCTCTTAGCTTTGAAGATGAGCTGAAGAGGAAAAGTGTGAAAATGCTCACACCTTACCCTGCATCTGTTTATAAAGCCTTGCCGATAGTCAGTGAAACATATCCAGTGGTGTACAGAGCTCAGCAACCTCAACATGAGCCCTTTAAAAGCCCAGGATTTCACTCTTTGGATCCCTCTGAACCGTTGACCCAAGACGCTGAAGTCCGACAGAGCAAGGTCTACCCAGCCATCTTCCACATTACTGAGTCTATGCAGACAGACTACATGCTGCGCAATCTGAGAGGAAAGCATATAAGTGAAGACCTTCAGTGTTCAAGGCCTGATCTAGAATCACCTCTCAGTGTAAAGAGGGCAGGGGCCTATCATCTCAACCTGTGCATGCTCTCAGCAGATGGAAATGTGGTCAAGTCTTCCAACCTGGGCCGACTTCCTATCCATAAGTATACATCTGTGTCTAAACCTATAGGTAAAAGTACACAAAGTCCTCTGATTGTGCCTAAAAAGAAAGAGCTCTTATCTACTTGTGTTGGTCCTGTCATTAACGGCAAAAACCCCAAAATCACTCATGACCCCAGAACTATATTCTCAGCCTATTCTAAACCACTGCATGACTCCCCAAGGAGAAGCTTAAGCAGCAGATGTAACACCTCAGCCACACAGTCGCAGCGGCCTATAGCCAGCAATCCAAGAAACAAGACAGACTTTGTAATAATCTCAAAACCAGTCAAGTACAGTCAAAACAAATTGAAAGACTTCACCAAAGAACACACATCTAAGGAAAACTTCTCCAAGGAACCAACAGAGCTGTATGAAAACCCTGTTTCACAGTCAGGTGTCTGTGACACTTTTGAAGCTCATGAGATGAGCTCTTTCTCACAAACCAGCGATGAAGACCACAGACTCCAAGACTCTACAAGTCAAAAAAATGAAGCCGTGGTCACTGATCACACTGACAATGAGGCCTTTAACAAGCTGAGTTATTCTCTGCATAGTTCTAAGACCATAATAAAAATTCCAACTGCTGAAAATGTGGACTAAAGgagcataaagtgctgtttaACTTATAAAGCAATATTTCGGTCATGAAACCATCCTAAAACAGCTTTACAAGATTTGGATTTCCTGAAGGCTAGAAAACCAGAAATACAACATGTACAAAATAagcattttgtgattttttttcataagtGTTTTGAAACATTTCAGCCCTTGAGTGATCCTTGTAGAGCAAATGAATCTGgtgattttatatatgta

Function

GO: NA

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258381.3 False 2357 mRNA 0.43 8 40777645 40783201
XM_015608135.2 False 1757 mRNA 0.42 6 40779923 40783201
XM_022675833.1 True 2363 mRNA 0.43 8 40777645 40783201
XM_022675834.1 False 2230 mRNA 0.43 9 40777668 40783201

Neighbor

gene id symbol gene type direction distance location
LOC103035173 serbp1,LOC107594603,LOC107758366,LOC107692416 coding upstream 45079 40725657 ~ 40732566 (+)
hsd17b7 hsd17b7,LOC107551038,LOC107724130 coding upstream 59575 40710906 ~ 40718070 (+)
ddr2 ddr2,ddr2a,LOC107551036,LOC107692417,LOC107724144 coding upstream 67818 40658400 ~ 40709827 (+)
uap1 uap1,LOC107551035,LOC107724142 coding upstream 123834 40637785 ~ 40653811 (+)
c13h1orf226 nos1ap coding upstream 177350 40580376 ~ 40600295 (+)
slc35d1 slc35d1,slc35d1a,LOC108441641,LOC108272060,LOC107724140,LOC107758361,LOC107684099 coding downstream 3027 40786228 ~ 40797936 (+)
LOC103041612 LOC108440175 coding downstream 337925 41121126 ~ 41125571 (+)
tmem125 tmem125,LOC108440199,LOC107725195,LOC107684333,LOC107551025 coding downstream 410901 41194102 ~ 41216267 (+)
tie1 tie1,LOC107731644,LOC107684058 coding downstream 499650 41282851 ~ 41305229 (+)
mpl NA coding downstream 525375 41308576 ~ 41323618 (+)
G117156 NA non-coding upstream 147501 40624010 ~ 40630144 (+)
G117154 NA non-coding upstream 156879 40619568 ~ 40620766 (+)
G117152 NA non-coding upstream 197341 40567208 ~ 40580304 (+)
G117147 NA non-coding upstream 415068 40360340 ~ 40362577 (+)
G117111 NA non-coding upstream 640918 40129092 ~ 40136727 (+)
G117183 NA non-coding downstream 33975 40817176 ~ 40821330 (+)
G117299 NA non-coding downstream 308300 41091501 ~ 41091992 (+)
G117324 ap1m3,LOC108441657,LOC108271949,LOC103463064,LOC106528254,LOC107724146,LOC103137203 non-coding downstream 442974 41226175 ~ 41233853 (+)
LOC111193789 NA non-coding downstream 522122 41305323 ~ 41306911 (+)
G117370 NA non-coding downstream 549000 41332201 ~ 41335785 (+)
G116997 NA other upstream 1418257 39358871 ~ 39359388 (+)
LOC103036266 LOC108441345 other upstream 2383115 38390277 ~ 38394530 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 3165323 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 3656318 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 4063761 36657392 ~ 36713884 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 16270 40799471 ~ 40808545 (+)
fam183a NA other downstream 375986 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 570300 41353501 ~ 41367729 (+)
G117642 NA other downstream 1568606 42351807 ~ 42355784 (+)

Expression


Co-expression Network