LOC103047611 (LOC108440812,LOC108271743,LOC107711051,LOC107585122,LOC107673583,LOC107582696)


Basic Information

Item Value
gene id LOC103047611
gene name LOC108440812,LOC108271743,LOC107711051,LOC107585122,LOC107673583,LOC107582696
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36559811 ~ 36576516 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015607125.2
TACTCACccccagagtctgagagagagcaggCTAGCAGAAAGAAGGAGAAATTACTCTATCTACTACCTGTAGCTTCTAATTCTCTCCTGTTCTGCTTTAGGCCAGTCTGTCACAATGCAGGCCACACCGGTGGATCCCACCACAATGGGCGTGGGGAAGGCCATTGCTGTTCTTACCTCTGGAGGAGACGCACAGGGTATGAATGCTGCAGTTAGGGCTACAGTGAGAGTTGGCATTTATACAGGTGCTAAAGTCTACTTTGTGCATGAGGGATATCAGGGTCTAGTGGATGGAGGAGACCACATTCGCCTGGCAACATGGGAGAGTGTATCCATGATGCTGCAACTGGGTGGCACTGTGATTGGCAGTGCCCGCTGTAAGGATTTCCGCACTAAAGAGGGCCGCACTAAAGCAGCGTGTAACCTGGTGAAGCTGGGCATCACTAACCTGTGTGTGATCGGGGGAGACGGCAGCCTCACGGGGGCCAATGAGTTCCGCACTGAGTGGAGTGAGCTGCTCCAGATCCTGCTGAAAGCAGGTAAGATCACAGCAGAGGAGGCCAGGCGTTCCTCTCATCTGAACATCGTAGGGATGGTCGGCTCCATAGATAATGATTTCTGTGGAACTGACATGACAATCGGAACCGACTCAGCCTTACACAGGATCATTGAGGTAGTGGACGCCATTACAACTACAGCTCAGAGTCATCAAAGAGCTTTCATTCTGGAGGTGATGGGCAGACACTGTGGATATTTGGCATTAGTATCGGCTCTGGCAAGCGGTGCTGACTGGGTCTTTATTCCTGAGATGCCTCCAGATGATGGCTGGGAGGATCACCTGTGCAGGAGACTTGCCAATCAAAGAAGCCTGGGCTACCGTCTGAATGTCATCATTGTGGCTGAGGGAGCTATGGATCGCAGTGGGAAACCCATTACGTGTGAAATGATCAAGAATCTCGTCACTAAGAAGCTGGGATTTGACACTCGAGCTACCATCCTGGGTCATGTGCAGAGAGGAGGAACACCTTCAGCCTTTGACAGAATCCTAGGCAGCAGGATGGGGGTGGAAGCTGTGATGGCTCTGCTTGAGGCCACTCCTGAAACACCTGCCTGTGTGGTCAGTCTGTCCGGGAATCAGGCTGTGAGGCTGCCCCTCATGGAGTGTGTGCAAGTGACTAAAGATGTAACCAAAGCCATGACAGAGGGCAGGTTTGAGGAGGCTGTAAAGCTCAGGGGAAAGAGTTTCGAAAACAACTGGAACACATATAAGTTGCTGGCTCATGTAAACCCTGCTGAGGTGAAGAGTAACATAAATATCGCCCTCATGAACGTGGGTGCCCCATGCTCCGGTATGAATGCAGCAGTACGCTCTGCAGTCAGGATCGGCATCCTACAGGGACATCACATGTTGGCCATACATGACGGATTTGAGGGTCTTGCCCATGGAAATATTGAGCCGATTTCTTGGGCCGCTGTTGGGAACTGGACGGGGCAGGGTGGCTCTAATTTGGGAACTAAGAGGAGCCTGCCAGCCAGCATGATGGAGGAAATCAGTCTGAATATTGCTAAGTTTAATATTCATGCTCTGGTCATCATTGGGGGATTTGAGgcGTTTGTGGGAGGTTTAGAGCTGGTGACTGGTAGAGAGAAGTATGAGGAATTGTGTATTCCTATCGTTGTTATTCCAGCCACCGTGTCCAATAATGTTCCTGGATCCGACTTCAGCGTTGGAGCTGACACTGCTCTCAACACCATTACATCAACATGTGACAGGATAAAGCAGTCGGCAGCTGGAACGAAACGCAGGGTTTTCATAATTGAGACGATGGGAGGATATTGCGGATATCTGGCAACCATGGCAGGCCTCGCTGCAGGAGCGGATGCTGCATACATCTATGAGGAACCTTTTGGCATCCATGACCTGGAGATAAATGTTGAGCATTTGGTGGAGAAGATGAAGACCACTGTGAAGAGAGGCCTCATCCTCAGGAATGAGAATTGTAACTCCAACTACACCACAGACTTCATCTTTAACCTTTACACAGAAGAGGGCAAAGGAGTTTTCGACTGCCGCAAAAATGTGCTGGGCCACATGCAACAGGGTGGAACTCCATCTCCATTCGACAGGAACTTCGGCACTAAGATGGGAGCTAAAGCAGTGCTGTGGCTGACTGATAAACTGAAGGAGTGCTACAGACATGGTCGTATCTTTGCCAACACGCCGGACTCCGCCTGTGTGCTGGGCATGAGGAAGAGAGCTTTGGTCTTCCAGCCTCTTGCTGACCTCAAAAGCAACACAGACTTCGAGCACCGTATCCCCAAGACTCAGTGGTGGCTAAAGCTGAGGCCCATTCTGAAGATTTTGGCCAAATACAAGATCAGTTTGGACATCTCAGAGAAGACAGCTTTGGAGAGTGTGATCAAGAAGAGAGGAACAGTCTAAACACACGAAATCTTACACTGGTGCTCCTGCTGTACTCGGTTTACACCATGCACACGCCAGTCCAGACATGGTTTCCATCCGAAACCACACACTCGGAGCGCGTGTTTGTGTACTCATGCAAGCTTACCACTTCCTTCTTCTGCCCTATTTCTTCATTTAACATCTATGACttcttgtctgtctctgttctgTATTTTAACACCATCTTTACATGCCTTGATTCCACACTTTGGTTCTCCTTTTGTCGCATGTGGTCCTGTATTGtgtgcaaaaataaatgtgGGACTCCTTTTATCACATTAAGACATTGAAGCAATAAAATGCTTCCCTGAAA

Function

NR:

description
PREDICTED: ATP-dependent 6-phosphofructokinase, muscle type-like isoform X1

GO:

id name namespace
GO:0046835 carbohydrate phosphorylation biological_process
GO:0006096 glycolytic process biological_process
GO:0006002 fructose 6-phosphate metabolic process biological_process
GO:0005945 6-phosphofructokinase complex cellular_component
GO:0003872 6-phosphofructokinase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K00850 pfkA, PFK; 6-phosphofructokinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015607125.2 True 2777 mRNA 0.50 22 36559811 36576516

Neighbor

gene id symbol gene type direction distance location
LOC103021650 myl6,myl6b,LOC103021650,LOC108440770,LOC108271738,LOC107390870,LOC105013534,LOC107570608,LOC106950810 coding upstream 101722 36450998 ~ 36458089 (+)
tsfm tsfm coding upstream 109979 36446391 ~ 36449832 (+)
sumf1 sumf1,LOC107673603 coding upstream 125967 36428470 ~ 36433844 (+)
LOC103023734 NA coding upstream 219785 36335569 ~ 36340026 (+)
efcab12 NA coding upstream 224321 36330318 ~ 36335490 (+)
LOC103047301 NA coding downstream 102 36576618 ~ 36596744 (+)
espl1 LOC107576721 coding downstream 21589 36598105 ~ 36616096 (+)
pfdn5 pfdn5,LOC107711057,LOC107673463,LOC107740577,LOC107667318 coding downstream 40860 36617376 ~ 36623011 (+)
LOC103045881 NA coding downstream 48519 36625035 ~ 36642464 (+)
LOC103045375 atf7b,LOC108440868,LOC108271749,LOC107740570,LOC107711055,LOC107585125,LOC107582698,LOC107667392 coding downstream 67384 36643900 ~ 36654840 (+)
LOC111193778 NA non-coding upstream 56249 36501233 ~ 36503562 (+)
G116255 NA non-coding upstream 97214 36416808 ~ 36462597 (+)
G116155 NA non-coding upstream 253049 36306350 ~ 36306762 (+)
G116138 NA non-coding upstream 336233 36189774 ~ 36223578 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding upstream 559755 35990033 ~ 36000056 (+)
G116349 LOC108440912,LOC108439999 non-coding downstream 155632 36732148 ~ 36742014 (+)
G116359 NA non-coding downstream 246948 36823464 ~ 36831576 (+)
G116356 LOC103042096,LOC108440962 non-coding downstream 248778 36825294 ~ 36827868 (+)
G116353 LOC108440955,LOC108272218,LOC107711062,LOC100304745,LOC107585131,LOC107673602,LOC103386112 non-coding downstream 256973 36833489 ~ 36834522 (+)
G116360 NA non-coding downstream 264325 36840841 ~ 36843238 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 200034 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 571751 35982119 ~ 35988060 (+)
tomm6 NA other upstream 591933 35958543 ~ 35967878 (+)
G115931 NA other upstream 825452 35730379 ~ 35734359 (+)
G115917 NA other upstream 883776 35642874 ~ 35676035 (+)
LOC103044253 LOC108440873 other downstream 80876 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 523498 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 948335 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 1813761 38390277 ~ 38394530 (+)
G116997 NA other downstream 2782355 39358871 ~ 39359388 (+)

Expression


Co-expression Network