LOC103046487


Basic Information

Item Value
gene id LOC103046487
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35582423 ~ 35594235 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015607130.2
CCAAACCCTCAGAGTCCAAGCCAGATGATGGGAATGATCATGAAAATGTAGAAATGAAAATCACAGAACTCCATCCACAGAGCCAgagtaagaaaaagaagagatttGGATCAACCCGAAAACCTCAAGGAGGACACAGACCAGATAATGAAGGAGAGGAAAGACAATTGAAAGATACAGAAGCTGCAGAAGAAATTGAACATGATGTGGAGGAGAGATGTTCTGATGAAACCACTCATCATGAATTGATTACAGACCTGCCTGATATGTCGAATGCCACATTAACAGATACTGATGTTCAGCCTATTGTCTGTGAAGCAAGTAAAACAGAAGGACTAGTGGAAGTGATAGGAGTACATGGAGAATTAGTAGAGGAGAGTATGGAACCAAAAGAAGATAAAACCATCTGTTCTGCAGAAGATCCCACCACTGAACAACATGTACTTTCTGAATTATCTTCTCAAACAGCTGAACTGAGTTTAACTACTAACATACAACCATCACCAGTAACTGAACTCTCAGACTCAAAGACAGATGATGGGAATGATCATGAAAATGTAGAAATGAAAATCACAGAACTCCATCCACAGAGCCAgagtaagaaaaagaagagatttGGATCAACCCGAAAACCTCAAGGAGGACACAGACCAGATAATGAAGGAGAGGAAAGACAATTGAAAGATACAGAAGCTGTAGAAGAAATTGAACATGATGTGGAGGAGATATGTTCTGCAGAAACCTTTCATCATGAAGTTCCTACTGACCTGCTTATTGAATCAACAGATGAAACAGGAGAACATGGGACAACTGATATGTCACATGCTACATTAACAGATACTGATGTTCAGCCTATTGTCTGTGAAGCAAGTAAAACAGAAGGACTAGTGGAAATGATAGAAGTACACGAAAAATCAGTACTAGAGGATGAGACGGTTAATGACTTTGAATCCACTGATGAGCAGAAAATGCCCCATATCACCACAGACATGCAGAATAATACTTCCACACACCATGATGTTTCTCAGGACATATCTGAGGTAGTTGAAGAACTTAATGAGGACAACAATGAAAGTGGAAGTCCCAACCAAGTTCATGTTCCTCTAACAAGTGGCACAGTGGATGTTATTCCTAAAACAATAGATAatgaaagagaggaaagaaaaggGAGAGATACAGAAGCTGCAGAAGAAATTGAACATGATGTGGAGGAGAGATGTTCTGATGAAACCACTCGTCATGAAGTTCCTACAGACCTGCTCACTGAATCACAGAGTGATGTGAGTGGACTACCACTTAGTATGCTTGGTCCAGCTCTTGAAAAAGAAATTGCTAAATCAACAGATAATACAGGACATTGTGAAGGGATAGATAGATCCTCTGATGCGTCAACAGATATTGATGTTCATGCTGTCGACCATGGAGTAAACAAAGCAGAAGGACTAGTGGAAGTGATAGGAGTACATGGAAAATTAATAGAGGAGAGTATGGAACCAAAAGAAGATCAAACCATCTGTTCTGCAGAAGATTTCACCACTGAACAACATGTACTTTCTGAATTATCTTCTACAACAGCTGAACTGAGTTTAACTACTAACATACAACCATCACCAGTAACTGAACTCTCAGACTCAAAGACAGATGATGGGAATGATCATGAAAATGTAGAAATGAAAATCACAGAACTACATCCACAGAGTCAgagtaagaaaaagaagagatttGGATCAACCCGAAAACCTCAAGGAGGACACAGACCAGATCATGAAGAAGAGGAAAGACAATTGAAAGATGCAGAAGCTGCAGAAGAAATTGAACATGATGTGGAGAAGAGATGTTCTCCAGAAACCTCTCATCATGAAGTTCCTACAAACCTGCTCACTGAATCAACAGATGAAACAGGAGAACATGGGACAACTGATAAGTCGAATGCCACATTAACAGATACTGATGTTCAGCCTGTTGTCAATGAAGCAAGTAAAACAGAAGGACTAGTGGAAATGATAAGAATACATGAAAAATCATTACTGGAGGATGAGAAGTTTGATAACTTTGAATCCACTGATAAGCAAAAAATGCCCCATATCAGCACAGACATGCAGAAtaatactcacacacaccatgATGTTTCTCAGGAAATATCTGAGGTAGTTGATGAGGACAATCGTGAAAATGGAAGCCCCAACCAAGTTCATGCTCCTCTAACCAGTGGCACAGAGGAGTTTATTACTGAAACACATGATAGTGTAGACATTCCAGTGAATACAGAAAATAGTCCTGAGGCTATTTCTGACCTAACAGGCCAGATCCCACAGGATCACAGTACATCTGAAGACAATCTAGAGAAGACAACACACAAAGAGTCAGAAAACACAAccacactcattcacacacaggaATCGGTCCCCATTCAGGATAATGTGATCACAGAGACTCCAGAACTGAGTACATCTGGGAAAAGGAGAACACGAAGAAGTCATAGAGAGCAGCTTTATGGAGGCACAAACGCAGCTGAGAAACTTACTGAAGAGGAGACTATGGAACCAGAAGAAGAAATCAGCAATTGTCCTACAGAAGATCCCACTACTAAAGATTTTACAGCATTGGGTTCAGAACAACATTTACTTTCTGAATTATCCTTTCAAACAGCTGATCTGAGTTTAACTACTAACATACAGCCATCACCAGTAACCGAAACTTCAGACTCCAAGACAGATGGGAATGATCatgaaaatgtagaaataaaaatcacagaACTCCATCCACAGAGccagaataagaaaaagaagagatttGGATCAACCCGGAGACCTCAAGGAGGACACAGACCAGATAATgaaggagagaaaagaaaatggaaAGATACAGAAGCTGCAGGAGAAATTGAACATGATGTGGAGGAGAGATGTTCTCCAGAAATCTCTCATCATGAAAGTACTGCAGACCTGCTGACTAAATCACAGAGTGATTTGAGTGGATCACTGAGTGTGATTAACCCTTCTCCGGAAAAAGAAATTGCTGATTCAACAAACAAAACAGGAGAATGTGAAAGGTTTCATATGCCATTTGTTGCATTGACAGATACTGTTGTTCACACTGTTGATCATGACGTAAGCAAAGAAGATAGACTGTTGGAAAATTCTGAAGGACATGGAAAACCAGTACTAGAGATTAAGAAGGTTGATGAGACTGAATCCTCAGAGGTTAATACTGAAACTCATGATAGAGTAGGTATTCCAGTGAATGCCGAAAATATTCATGCAATTACACCTGaccaaataaaacagtttttgcATCATGATATATCTGAAGTCCATCCAGAGGAGCCAACAGACAGAGAGCCAGAAAGCACCAGCTTAGGCATTCACATACAGGAAATAAAAACAACTGAGGGTAGTGCGATTGCTCACAATCCAGAACTGAGCACATCTGGGAAAAGAAGAAAGATTGGCTCAACTCGAAGGAGTcacagagagcagctccacggAGGTGGCAGAAAAACAATTAacgaaaaagaagaaaatatttgtgaaaaagacaaaaataggAATTTCGAAgacacaaaaaatgttaatgaaGAGCAGAGTATGGaagcaaaagaagaagaaagcacCATTCATACAGAAGATCCCACCACTGATGATTTTCCAGCAGTGTGTTCAGAACATGTACTTTCTGAATCATCCTCTCAAACAGCTGAACTGAGTTTGTCTACTAACATACAACCATCCCCACTCACTGAACACCCAGATGATGGGAATGATCATGAAAATGTAGAATTGAAAATTACAGAACTCCATCCACAGAGCCAgagtaagaaaaagaagagatttGGATCAACCCGAAAACCTCAAGGAGGACACAGACCAGATAATGAAGGAGAGGAAAGAAAATGGAAAGATACAGAAGCTGCAGAAGAAACTGAAAATGATGTTGAGGAGAGATGTTCTAAAGAAACCACTCATTATGAGATTTCCACAGACCTGCTGATTGAATCACAGAGTGATATGAGTGAACCATCACTGAGTATGCTTGACCCACCTTTGGAAAAGGTAACTGCTGAATCATCAGATGAAACAGGAGAGTGTGGAGGGGTAGATCTGCCAGCAGAAAAACCTGTGCAAATTACAGACGTACATCACAAATTGGTACTAGAGGTTGAGAAGGTTGATGACTCAAAATCCTCAGagattaatgttcaaattcaaGATAGCATAGAACTAGAGAAGCCAACAAACATAATCCAAAGTCATACAAGCACAgactcactcattcacacacaggaATCAAACACCATTCAGGATAATGTGATCACAGAGACTCCAGAACTGAGCACATctgggaaaaagagaaaaataggaTCAACTCGAAGAAGTCATAGAGAGCAGCTCCATGGACGAGACaagaaaaagataaatgaagaagaagaaaatcaaGGTGCAAAAGATGAAGAGGAGAGGTATGGTGAAGAGAGTGCTTTTAACCTTGCAGATAGATCTATCAAATCAGGCACACAAATAGTTATTGAAGAGGAAAGTATGCCAGCAAAAGAAGAAATTGGTGCCAGTCAAACAGAAGATCCCACCACTGAAAATGTGTGTTCAGAACAACATGTACTTTCTGAATTATCTTCTCAAACAGCTGAACTGATTTTAACTACTAACATACAACCATCACCAGTAAGTGAGTCCAAGACAGATGAAGATGGGAATGatcatgaaaatgtaaaaatgaaaatcacAGAACTCCATCCACAGAGCCagagtaagaaaaagaaaagatttgGATCAACCCGAAAACCTCAAGGAGGACACAGACCAGATAATGAAGAAGAGGAAAGACAATTGAAAGATACTGAAGCTGCAGAAGAAACTGAACATGGTGTGGAGGAGAGATGTTCTCAAGAAACCACTCATTATGACATTTCTACAGACCTAATGATTGAATCACAGAGTGATTTGAGTGGATTTTCACTGTGTATGATTGACCCATCTCTGGAAAAAGAAACACAACTACAAAATGCAGCTACTGATCTTCACTTACAAGATTTCAAAAACCTtcaatgtattgtgatatcgGAGAAGGGCTCAAATCCTAAAGAGCAACACCTTAGAGATGACCAGAAGGAGGCCACTGAAGAGCTGAAAGAAGAAGGCACCACTAAGGAACTAGAGCTTGAAGAAAGTACAGCAGTTACTCAGGAAGCTAGTTTAGAGGCTGAGACACTGAGGAACTTAAATTGTACATCTAACGCAGAAACAGCTCATCCATCCATAGCTACAGAGCTCTCTGTACCTGCAGATTCAGTAAACCTTGTGATACCTGAAGCTGAAAAAATGgacaagaaaagaagaaagatggGTTCAACTCGCAGGAGTTACAAGGGAGCAGATAGAAAGGAGGTTCTGGGAGAAACAGGGGGTAAGGACCCAAGAGCTGATGAAGATATGGAGGACACGCTGCTTCATGACACAGCTTCTGGATGGGGGATTACAGCAAACACAACAGGGCAAGATACTGAACCACAAATTCACCATATGTTTGATAAATCAGAAGGCTCACTTCTCAACGAGATTGAGTTTGAACTAAACATGAGTTGTCAACTGAGTCACACAGCTCCTGCTATCTTAGAGAGCTCAGTAAACAATACCCTGTCTCCATATAATTCATCAGAAAATTCACAACCAGCAGCTGAGCAGTGTAGGAGTAGTTCCGAACTTCAGCACTCTCAAAACTCTCAAATTCAAGCTGAAATCAGCTCCCCAGCGAGGAGAAGAAAAATGGGGTCGACTCGCAAGACACCCAGGAACAAGCAAACAGAAGACATGAAGGATGAGAGCCTAGAGACTGAACATCAAGCAGAAAATCTGGACAAGATTGAACTGGAGAGAGAAAAGGCCAAGGAcatgcttacagtaaaaatgACAGAAGATAAGAAAGAATCTGTTGAGCTCACTCCTAAAGTCCATGACAGCTCAGCATCTACAGAGCTACCTCCTCCAGGGAGTAAGAGGAAGTTTGGGTCCAGACGCACTGCGAAGGGCAGCAGAAATCTGGGTGGTTTACCACCTGATGAATTTGAGCCCAACCAGGAAAAAACAGAAGATGCCCAAGTCCTCTCTGATGAGTTGACAGTTTGTGATCCATACTTCACATCAGGACCACAGAGCACACTTGTCTGTCAACCAGTCGAAGACGATAACATGGAAGCCAgCAGCCTAGGAAAGGAACATGTTAACAACTCTGCTGTGAATGAAGCGGATGTATCTACTGGCCTGGTCTCATTGGATGACCTCAGAAAGTCTGCACTCTATAATGGAAGCactggaaaaagagaaaagatagACTTTGAGAGATGGAGTGAGCAAAttccagattttgGAGTAGCTGTGTATAATGTGGTGATGGTGGGAAACAGCAGTGTGGGGAAGACATCGTTCATGAATCGCCTCCAGAGTGGACACTTCAGCCCTGATTACTGTTCAACTATTGGTGTTGATACCTGTGTTCAGAACATCACACTCGGAGGCAGGACTGTTAAACTGCATGTTTGGGACACAGCAGGCCAGGAGAGATATCACAGCATCACCAGACAGGTGTTCCACAAGGCCCAGGGGCTTCTGTTGATGTATGACATCACATCCTCTGAGAGTTTCTGTGCAGTACGCAACTGGGTCACCCAGATTAAGGAATGCGCTCCTGATGATGTCATCATGATTTTACTTGGCAACAAGAATGACTGTGCAGAGAGAAAAGTCCAGCTTCAGGAAGGGGAGGATCTGTCGAGGGAGTATAAAATTCATTTTCTGGAGTGCAGTGCTGCAACTGGTGAGAATGTAGAAGAATCTATGAAGACTTTAGCCTGCTTACTGGTGAAACAGAATGTGAGGAGAGAAGAAGATCAAACAATATTACAGCCAAAACCACCAAAGCAGAAGTCAGGTTGCTGttaaaaagcacacaaacaagaaaCTTTGTTCACACATTTATGAAACTTACAGTATatgcacaaaaacaaacagtatataaataaagcaaGCACAGTAGACTACTACTTCATTCTACAAtgattacagtatatattactGTCTTTTTCAGcttctgtgtgtatttaattaatttatctcCACATGCTTTTTACATGCTTACActtgattttaaattaataaacattttaattaaagtgA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015607130.2 True 7187 mRNA 0.41 10 35582423 35594235

Neighbor

gene id symbol gene type direction distance location
LOC103021651 slc6a13,LOC108413697,LOC107567077,LOC107721195,LOC107584422,LOC108271735 coding upstream 58508 35503056 ~ 35523915 (+)
LOC103022280 LOC103022280,LOC108436247,LOC108271634 coding upstream 111218 35462800 ~ 35471205 (+)
hemk1 NA coding upstream 313052 35254096 ~ 35269371 (+)
cav3 cav3,LOC107749619,LOC107584510,LOC107750282 coding upstream 758714 34815978 ~ 34823709 (+)
LOC103023460 NA coding upstream 778142 34798245 ~ 34804281 (+)
trub2 trub2 coding downstream 22089 35616324 ~ 35620073 (+)
hdhd3 hdhd3 coding downstream 27417 35621652 ~ 35625208 (+)
LOC103043339 LOC108440316,LOC108271728 coding downstream 54602 35648837 ~ 35661125 (+)
sfi1 NA coding downstream 93391 35687626 ~ 35709189 (+)
LOC103040678 zgc:172271,LOC108440373,LOC107721198,LOC107568196,LOC107667401 coding downstream 115045 35709280 ~ 35717863 (+)
G115876 LOC108271732 non-coding upstream 32876 35535980 ~ 35549547 (+)
G115874 fkbp5,LOC108271732,LOC108413698,LOC105026479 non-coding upstream 50402 35529492 ~ 35532021 (+)
G115873 NA non-coding upstream 55913 35525409 ~ 35526510 (+)
LOC111193769 NA non-coding upstream 57334 35524334 ~ 35525089 (+)
G115861 LOC108436256,LOC107750275 non-coding upstream 98668 35480195 ~ 35483755 (+)
G115925 patz1 non-coding downstream 67208 35661443 ~ 35664877 (+)
G115915 eif4enif1 non-coding downstream 81943 35676178 ~ 35676841 (+)
G116020 NA non-coding downstream 267979 35862214 ~ 35862823 (+)
LOC111193772 NA non-coding downstream 300712 35894947 ~ 35899393 (+)
G116050 NA non-coding downstream 336689 35930924 ~ 35933206 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 22697 35553601 ~ 35559726 (+)
LOC103023619 cadps,LOC106953609 other upstream 218783 35290828 ~ 35363640 (+)
LOC111193767 NA other upstream 452350 35057150 ~ 35130073 (+)
G115736 NA other upstream 573481 34920701 ~ 35008942 (+)
LOC103038162 NA other upstream 1190464 34380297 ~ 34391959 (+)
G115917 NA other downstream 48639 35642874 ~ 35676035 (+)
G115931 NA other downstream 136144 35730379 ~ 35734359 (+)
tomm6 NA other downstream 364308 35958543 ~ 35967878 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other downstream 387884 35982119 ~ 35988060 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 748750 36342985 ~ 36359777 (+)

Expression


Co-expression Network