LOC111193666


Basic Information

Item Value
gene id LOC111193666
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 25257569 ~ 25259173 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675086.1
TTTAGTACCACATCTACACCTACAACTACAGAAACGCTAACTACTATACAACTAACAACCACTCTTCTTAGCACCACTTTTCCAACAACAACTGAGCTTCAAACTACCATTCCACCAACAACAACATTCCCTGCAAGCACCACCAAAAGAACTACAGCTGAAACAACTACTCCAGCTACAACCACTAGAACCACTACTGCAACCACCACATCCACAACTACAAAGAAGAAAGATGAGgacaaagacaaagaagaaAGTCCAGGAACAAATCTAGTTTTCCCACCTTTGGTTTCACCTGATGGTATTCCTACCCCTACTCCTCATTCAAAAAATAAGCATCCTTTTGCCAATTCTGCTCCATTAAACACTCATATATCTGATCTAACTCCAACAAGTCCCCACAAAACTGCAGTAATTCCAGAAAAAGACAGTACTATTCATCCAGCAACTACTAACCAACAACCATCTGTTGTTTCACTGAGCCCAACTGAGAGTCCAACAACTACCACACCCCAAAAAACATCAAGCCATGCATACACAACTGTGAATGTTACATCAACCCTGTTTTCTAATGCAGCCACAACTACAACTCAAACATCAATCATTTTGGAGGAAAGTGCTACCAAACCTTCTCCCATTACTGCTGCAGTTTCGGCTAAAACTCAAATTAATGCCACCACTATCAGTGGCAGTGCTGATATTCCAAACTCAACAGTTACTACTTCCTATACAAAAGCAATAATTGAACCATTAACCTCTGCAACATCTCAGTATACTGCTCCTTCAGACACCTCTGCTGCTTCTTTAAGTACAGATCTTCCATTCAGCTTGTCTTCCAGTCAAAGTAGAACACCTGATTTTGAAACCGTAAAtgcttctcatccaaccactagtgttTCTCCATCCGTTGCTTATGGTTTCAATGCCACTCACAGTCTGCCTTCCTTCTCAGCTCCTCCTCCAACCTCCAACCTCCAACCAAATCCCTCATTTCTTTTTCCAAATTCCTCTATACCATGCACATCCATTGCACAAGTCTTTCACCATTACCAGAATGTTCTTGCCTACTACCAAATGTTATATCAATACCAGAACAGCGGATAGCTTCATGCCAGAATATCTATATTAATCCCAAATCACATGATTATAACTAATGATTTTAATCGCTTAGCAATTAAGATAAGacataaatatacactagaatcaatactaataaacataattaattttgtgattttatttgtcTTCAAAAATTCAATAAGGTTATACTCCAAACATAGCTTGTAACTTTATTTTCATATAGCTCAAatacatgttttaccatatacAGTAGGTTTTGAAtggctgcttttttattttaacatttatttaaccaGGATAACATGactattaagataaaaaaaaaaataacacacaaagacacacacggTAAAATACATGAATGAATGTTGTTTTCTTTATACTAGTTTAATCACTCTTTAATGCTAAATTATGCAGTTTCAATTAATGTACAATTCAGACTAAAAAACATCTAGACtttaataattgaatatgaGGTCATCAAATGTGTCTCCAAAGTACCACCTCATACACCACTTGTATAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675086.1 True 1605 mRNA 0.37 1 25257569 25259173

Neighbor

gene id symbol gene type direction distance location
acox1 acox1 coding upstream 25168 25209804 ~ 25232401 (+)
evpl evpl coding upstream 53135 25175512 ~ 25204434 (+)
srp68 srp68 coding upstream 88570 25146097 ~ 25168999 (+)
polg2 NA coding upstream 127253 25126447 ~ 25130316 (+)
LOC103046784 ddx5,LOC106588346 coding upstream 132903 25116126 ~ 25124666 (+)
rhbdf2 rhbdf2 coding downstream 6302 25265475 ~ 25319352 (+)
LOC103023085 slc25a6,LOC108424711,LOC108273102,LOC108426068,LOC107752260,LOC107702905,LOC107557761,LOC103140121,LOC106926499 coding downstream 73968 25333141 ~ 25341081 (+)
LOC103024355 LOC103024355,LOC108424794,LOC108273264,LOC106588570,LOC107681484,LOC107711600 coding downstream 269404 25528577 ~ 25536540 (+)
prpsap1 prpsap1,LOC106606986,LOC107731682,LOC106588225,LOC105013149 coding downstream 278520 25537693 ~ 25570327 (+)
LOC103034703 pltp,LOC107696437,LOC107744357,LOC107740259,LOC107666176,LOC107560511,LOC107587597 coding downstream 398680 25657853 ~ 25670407 (+)
G113552 NA non-coding upstream 156686 25037538 ~ 25100883 (+)
G113557 NA non-coding upstream 181628 25075205 ~ 25075941 (+)
G113457 NA non-coding upstream 300655 24956470 ~ 24956914 (+)
G113456 NA non-coding upstream 313816 24943428 ~ 24943753 (+)
G113451 NA non-coding upstream 370454 24885431 ~ 24887115 (+)
G113680 NA non-coding downstream 141281 25400454 ~ 25401186 (+)
G113682 NA non-coding downstream 159446 25418619 ~ 25510014 (+)
G113683 NA non-coding downstream 167287 25426460 ~ 25426736 (+)
G113703 NA non-coding downstream 349235 25608408 ~ 25608878 (+)
G113707 ctsa,LOC107587598,LOC107696438,LOC107744356 non-coding downstream 412296 25671469 ~ 25683917 (+)
LOC103030782 NA other upstream 3439 25250384 ~ 25254130 (+)
G113422 NA other upstream 782231 24474078 ~ 24475338 (+)
LOC103027315 manbal,LOC107666036,LOC107744407 other upstream 837890 24411009 ~ 24419679 (+)
LOC103026829 LOC108272263,LOC108410934,LOC106582708,LOC107744363,LOC107696444,LOC107587591,LOC107560506,LOC107666116 other upstream 855838 24298179 ~ 24401731 (+)
LOC103026336 mybph,LOC108441582,LOC107587590,LOC107740275,LOC107696393,LOC107744364 other upstream 969342 24261682 ~ 24288227 (+)
G113642 acox1 other downstream 2213 25261386 ~ 25262221 (+)
ube2o ube2o other downstream 82980 25342153 ~ 25396983 (+)
G113979 snrpb,LOC101173217 other downstream 2088276 27347449 ~ 27352444 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other downstream 2131841 27391014 ~ 27489522 (+)
LOC103044650 LOC108427558 other downstream 3948570 29207743 ~ 29281311 (+)

Expression


Co-expression Network