ralgapb (ralgapb)


Basic Information

Item Value
gene id ralgapb
gene name ralgapb
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 27976381 ~ 28022819 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675093.1
TGCAGGAGCCTGCTGCTCGACGCTGCAGCCAAACCCTACCTACCGCCTGGATGACGATGGGAAGGAGGATCTGATCCGGCTAGTTAGTGACAAAGATGCTGCAAAGTTTACCCCGTTTCTCCAGACAGAACCCCTGAGAAGCTGCGAGCGTTTGCTATGAAACCCAAAGCAGATCATAGCTGGACCCACTAGAAGCCTCAGCCATGTACTCTGAGTGGAGGTCTTTGCACCTGGTGGTCCAGAGTGATCAGGGCCACCTGAGCGTGCTGCACTCCTACCCACCTACTGTTGGCCGGGATGTAGCCAACGCAGTGGTACGCCCCCTAGGGGCCAGCCTTGGAGCCCCTGCCTCTGAGTGCCTCCTCAAGACTGATAAAGAGGTGAAATGGACTATGGAGGTACTGTGTTATGGTCTGACCCTTCCTCTGGATGGAGATACAGTTAAGTTGTGTGTGGATGTCTATACTGACTGGATCATGGCACTGGTGTCACCACGAGATTCCATACCCCAACCCATCATCAAAGAGCCCAACCTTTATGTCCAAACTATCCTCAAACATCTTCACAACCTCTTCCTGCCGAGGCCTGAACAGTTCAGCCCCATGCACTTCAGGTTGTGTCAGCAGGTGCTGTCTGCGGTGCAGAAGCTGGCCCGTGATTCCTCCTCCATGGCCAGAGAAACCTGGGAGGTGCTGCTTCTTTTCCTCCTCCGCATCAACGACACGTTACTTGCCCCGCCTACTGTAGGAGGTGGGATAGCTGAGAAGCTAGCGGAGAAGCTAATCAGTGTACTGTTTGAGGTCTGGTTTCTGGCCTGCACACGCTGTTTCCCCACCCCTCCATACTGGAAGACTGCCAGAGAGATGCTGGCTAACTGGAGACACCACCCTCCAGTGGTGGAGCAGTGGAGCAAAGTTATCGCCGCTCTCACCTCCAGGCTACTGAGGTTCACATACGGACCATCCTTCCCTCCGTTTAAAGTGCCAGAGGAGGATGCCAGTCTCATACCTGCAGAAATGGATAATGACTGTGTGGCACAGACTTGGTATCGCTTCTTACACATGCTCAGtaACCCAGTGGACCTGAGTAACCCTGTGATCGTAAGCTCCACTCCCAAGTTTCAAGAGCAGTTGCTGGgggtgagcagtgtgcctcagGAGGTGATCCAGCACCCCTGCCTCAAACAGCTGCCTCAGATCTTCTTTAGGGCGATGAGGGGCATCAGCTGTCTGGTGGATGCTTTTCTAGGTATATCCAGACCTCGGTCAGACAGTGCCCCGCCCACTCCTGTTAATAGACTTAGCATGCCACCACCCCCAACGACCACCAACACCACGCCTCCTCACAGCCGCAGACACAGACCCACAGCGGTTACCAAGACAACTAGCAAAACCACAACGACTGGCCAATCCAAAGTATCGCATCAGCCTTCCTCCACCTCGCCCCTGTCCAGTCCAAACCAGACGAGCTCAGAGCCGCGACCCCTGCCTGCTCCCACCAGACCAAAAGTCAACAGTGTTTTGAACCTGTTTGGTCAGTGGCTGTTTGATGCTGCGCTGGTTCACTGTAAACTCCACTCTGGCCTCAGCAGAGAAAGTAGTATGACTGCACTTGCTACTCAGGCTGGAGTTGAATTGAGGAGGAAAGGCTCTCAGATGTCTACTGACACCATGGTCTCAAACCCCATGTTTGACGCCAACGAGTTTCCCGATAATTACGAGTCTGGTCGAGCAGAGGCCTGTGGAACGCTGTGCAGAATCTTCTGCAGCAAAAAAACAGGAGAGGAGATTTTACCCGTCTACCTGTCCAGGTTCTACATGGTCCTCATCCAGGGCCTTCAGATTTCCGACTTTATCTGCAGACCAGTTCTGGCCAGTATTATTCTGAACTCCTCTGCTCTGTTCTGCTCTGATCTGAAAGGGATTAACGTAGTGGTTCCTTACTTTATATCTGCACTGGAAATAATTCTACCTGATCGtgaattGACCAAATTTAAGTCATATGTGAACCCCACTGAACTGAGAAGAGCTTCCATCAACATTCTGCTGTCTATGCTGCCTCTACCACACCATTTTGGCAAAGTCAAATCAGAGGTTCTTTTGGAAGGAAAATTCAGCAATGATGATAACTCGCTTCATGACAAAGCTGTAACCTTCCTCTCACTGAAGCTGCGGCTGGTCAATGTCTTAATTGGTGCcctgcaaacagagacagacccAATCAACACACAGATGATACTAGCTGCAATGCTGAATATTGTTCAGGATTCTGCACTTTTGGAGTCTATAGGTGCTCAAGCTGAAGTTGTAAcACTAACCCGCTCTCTGTGGCGTGCTGTGTGTTATATCCCAGCtcttcacacagacacagcgGCTGGCCTGCTGATCCGCAGCATCCACCTGGTCACCCAAAGACTAAACTCTCAGTGGAGAGCTGATATGAGCATCTCACTCGCCGCTCTCGAGCTGCTTGCCGGACTCGCCAAGGTGAAGGCTAGTGTGGAGTCGTCTGATCGTAAGCGAGCCGTCAGCTCGGTTTGTGGTTATATTGTATATCAGTGCAGTCGGCCCGCTCCCCTCCACTCCAGAGACCTGCACTCCATGATCGTAGCTGCTTTccagtgcctgtgtgtgtggctCACAGAGCATCCTGACATGCTGAATGAGAAGGATTGCCTAATAGAGGTGTTAGAGATTGTAGAACtcggcatctcgggcagcaaGTCAAAGACAGGTGAGCAGGAAGTGAGGTATAAAGGTGATAAGGAGCATAACCCCGCCTCCATGAGGGTCAAAGATGCAGCTGAAGCCACTTTGTCATGTATAATGCAGGTGCTGGGGGCGTTCCCATCCCCGAGCGGTCCCGCCTCCCCCTGTAGTCTGCTGAATGAGGACACTTTAGTTAAATACTCCCGGCTGACGTCCACCTCTCACAGCAACTTCAGATACTTCGTCCTCGACAATTCTGTCATCCTGGCCATGCTAGAGCAGCCCCTTGGCAACGAGCAGAACCCCTGTCCATCTGTCACAATGCTGATCCGAGGCACGTGTGGCCGTCATGCCTGGACCATGCAACTCTTCCATCAGCCCAGAGGAGCCAGGGCCAATCAGAAGGTGTTTGTTCCAGAGGGTCGACCAACTCCCAAAAACGATGTAGGGATTCGGTTTAATGTGAAGCACCGTCCGTTTCCAGAAGAGGTGGACAAGATTCCATTTGTGAAAGCTGATCTCAGCATTCCCGACCTGCATGATATAGTGGATAAGGAGcTGGAGCAACAGCATGAGAAGCTGCGTGGTGTGATGGTGAAGCAGATAGAGTATGAGACAACCCTGGAGCATCACACTGAGGAGGTGTGGAAGAACAAACCTTTTCCTGACCCTCTAACTGACTGCAAACCTCCTCCTCCAGCACAGGAGTTCCAGACCGCCCGTCTCTTCCTGTCACACTTCGGCTTCCTGTCGCTAGAGGCTCTTAAGGAGCCAGGTAATAGCCGTTTGCCTCCCCACCTCATTGCTCTCGACTCGGCTGTTCCAGGATTCTTTGATGATATTGGCTTCCTAGACCTGTTACCATGCCGACCCTGCGACACCGTTTTCATCTTCTACATGAAGGCGGGGCAGAAGAGCAGCCAAGAGATCTTGAGAAACGTGGAGTCGTCTGCGAATGTCCAGCCACACTTcctggagctgctgctgtctctGGGCTGGCCAGTGGAAGTCGGGCAACACCCAGGCTGGACTGGAAGTGTGTACACCAGCTGGACAATCAACACATCCAGTGGCACTGAAACACCAGATGAGTGTGTGTCGGTGGGAGACACTGGAGGCGGGGTTTTTAATGGTGAGAAGAGAGTGCTGTACTACGCTGATGCCCTCACTGAAATTGCTTTTGTGGTGCCCTCACTCAGTGACTCCTCCGCGGAGTCATCGGAGAACAGTTTCCCCACGGCAGACTCTGATTCTCAGATGGAGCTGCTGCCAAGCCTGCTGAAACAACCCAACCTCACACTGGAGCTCTTCCCCAACCACTCGGACAACATGGGCCTGACACAGCGGTCTCCCACAGTGAAGAGTAAGAAGCTGCCGTCGGGCAGGAGTATACCTCCACTGGGTCCAGAGACTAAAGTACTGGTGGTCTGGGTGGAGCGATATGATGACATTGAAAACTTCCCTGTGTCCGAGTTGTTGGCGGAGACCAGTACAGGAGTGGAGAGTGCAGTCAACAGTAATGCTTCCAGATCCAGCTCCTCGGAGAAAGACGTCCCAGTCATTTTCATCCACCCACTGAAAACCGGTCTGTTCCGCATCAAGCTGCACGGAGCCATGGGCAAGTTCAGCATGGTCATCCCTCTAGTGGACAACATGGTGGTCAGCAGGCGATCACTAGGCTTTTTGGTGAGACAGACTGTAATAAACGCATGTCGGAGGAAGCGCCTGGAAAGCGACTCGTACAGCCCTCCTCACGTACGACGGAAACAGAAAATATCCGAAATCGTTAACCGTTACCGCAACAAGCAGCTGGAGCCTGAGTTCTACACGTCACTGTTCCAGGAGGTCGGAGAGACTAGCCTCAATCCCTAAACACACAACCCACCCCAaaaatactctctctctctcacacacacacaggcgcaCACATGATGGATGGAgaattactgtgttttttttttttttggctacatGGCCATAGTCTCTGAGCTGTCAGCAGCTCCAGTCATAACCATGACAACTTCCTAGCTGGTCTAAAAGCTGATGCCAGAATGGATGCTTTTTTCCATTTCCTCATTACTGTATTTCAcatgcttttattttgacatcaaCCAAGACTGGAAAGAAGACGATATAGATGCAAGAGGAGACAATTGACTCTGAGAATACTATCATTCATTAAGAAACACTAATGCAGTTGTCAGGAGTGGGGTATAGAGATATATATAGGAGAGGTTGATTATGGCTTTTCTTTGTCCtccttagacacacacacacacacacaaatacacaaatagtGCCAGTCTGTGTTGATGCATAACATGAATAATTTTCTTTTCAAACTCAGGTGGTTTTACCATTCTTCATATGCATTGACATGGTCATGTAATTCAATGCACTCCAACAAGCTGACCTCAGCTTTATGTTCCTCCtcgtctttttcttcttctttcttttctttcgttttgttcttctctccctctctctctctgtctgtcgcTTTCCCTCTCAAATATGATCATGCCAGGACTTTGACTTCACAAAAGTCCTAAATAATACTCCATTCAGAGAATGTTTGGCTTTTTCCATCGAATCTATTTATGTAACGGTTGTGAAGATGGCTTCAAAAGTCCTCCAGAATGGTTGAGTTTTATAAAGTCATTGACAAACTACTGAGCACTCCAGTACTTCTAGACTTCTAGATCCCACACGTTTTTTGGCGCTTACTATGGGATTGGCGCGGCTGAACCTGTGGTGGGATACACTACTCTATtacactattttatttcttgatCAATCTCACCAGTAGGTGTTCGTTGTTTCAGCTTGACTGTGATCCATCCAGACACATTTTCAATTCAAAGAGTCATAAGGGCTTCTATCCTTCATTTCTTgtgttctctttctgttttattttgtaagttATCTGGTAAATGTAGGTGCCACTTGTTTCTTTTTGCAATTTCTGCTGGATGTCAGAAacactggtcttttttttagacgttattttcgttatttcaaactttttttatttcgaTTACAAAATGAGAATTTGATCCACAGGAAATCCATGTTTTGTCTCTCGTTTCCTGAGAGACGCTTCTAGTGTCATTTTTGTCTTTGTATTTTGACACGCAACTTTTAAAACACAGGTCACTACAGAGAAGAGTCGATTGAAAGGAATGACTGTTAAAACATTACTGTAGCTGGTCCATGATGCTCATTCAGGTTAACCTGCtcattcttcttttctttcatttctctcCATTGATTAAAGAGGAATTGCCTTTAGTCAGTAAAGGACAAGTCTTGTGTTGgtctaataaatcaataaaagtcTCATATGCCCTCTAAGTAAACAATCTAAAGTCGacagactttaaataatactttaaataataagtaaatatgCCGAAAATTGATAATACCTCACATCCATTTTGTGTCTATAAAAATCACACTCGATTAATTAAAGAAGATTCCTCCTTCTTTATAAAAAAGACCAACTTTCATGAACCGTTTCTTCCAGTGCACAAGACTTGGGCCTTTATTCGGTTGGTTAGAGAcgtccttttcttcttttttctgtaaatattgaGGGCATCGACTTTGTATAAAGTTGGACTTTACATGTAAATATGAGGGTGTGAAGTTTCGCTCACTCATTCTATTAGGAAAGGCACAAAAAAGAACGCTTGTTTGTATTTATGCCTATCATATATGTGTCCTAAAGAAACACATTGGGTATTGAATGTAACACATgtaatgaaataaagattttaattaaCTTCTTATCATAAA

Function

symbol description
ralgapb Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity. Predicted to act upstream of or within regulation of small GTPase mediated signal transduction. Orthologous to human RALGAPB (Ral GTPase activating protein non-catalytic subunit beta).

NR:

description
PREDICTED: ral GTPase-activating protein subunit beta isoform X9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675093.1 True 6509 mRNA 0.48 29 27976381 28022819

Neighbor

gene id symbol gene type direction distance location
snta1 snta1,LOC107681301,LOC107587638 coding upstream 336018 27576234 ~ 27640363 (+)
tfap2c tfap2c coding upstream 1630608 26323691 ~ 26345773 (+)
rtfdc1 rtfdc1 coding upstream 1656888 26271043 ~ 26319493 (+)
LOC111193668 NA coding upstream 1901930 26069067 ~ 26074451 (+)
LOC111193667 NA coding upstream 1913871 26059181 ~ 26062510 (+)
kcnq2 kcnq2,LOC100537363 coding downstream 18953 28041772 ~ 28127236 (+)
arfrp1 arfrp1 coding downstream 119109 28141928 ~ 28149421 (+)
stmn3 stmn3 coding downstream 131288 28154107 ~ 28167135 (+)
LOC103025927 NA coding downstream 149755 28172574 ~ 28198880 (+)
sp7 sp7 coding downstream 201840 28224659 ~ 28229015 (+)
G114026 NA non-coding upstream 310406 27661540 ~ 27665975 (+)
G114020 NA non-coding upstream 330231 27642654 ~ 27646150 (+)
G114021 NA non-coding upstream 338841 27551064 ~ 27637540 (+)
G114011 NA non-coding upstream 461513 27513399 ~ 27514868 (+)
G114008 NA non-coding upstream 507081 27468980 ~ 27469300 (+)
G114127 NA non-coding downstream 43871 28066690 ~ 28130292 (+)
G114154 NA non-coding downstream 148692 28171511 ~ 28171989 (+)
G114159 NA non-coding downstream 194388 28217207 ~ 28217435 (+)
G114168 NA non-coding downstream 274675 28297494 ~ 28297775 (+)
G114162 LOC108431801 non-coding downstream 289821 28312640 ~ 28316397 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other upstream 486859 27391014 ~ 27489522 (+)
G113979 snrpb,LOC101173217 other upstream 623937 27347449 ~ 27352444 (+)
ube2o ube2o other upstream 2579398 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 2714160 25261386 ~ 25262221 (+)
LOC103030782 NA other upstream 2722251 25250384 ~ 25254130 (+)
LOC103044650 LOC108427558 other downstream 1184924 29207743 ~ 29281311 (+)
LOC111193669 NA other downstream 1859552 29882371 ~ 29887978 (+)
G114698 NA other downstream 2103516 30126335 ~ 30129896 (+)
G114841 NA other downstream 2827490 30850309 ~ 30880553 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 3870466 31893285 ~ 31894351 (+)

Expression


Co-expression Network