XLOC_000748


Basic Information

Item Value
gene id XLOC_000748
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 55437572 ~ 55439275 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003228
TTTTTAAGATGATCTTGTACAGACCCAGGAAGAGGAAGACCTGAGGATCTCATTTGAGCGTCGACACTGAGACACTGCAGCACGGTAAGAGCATTTCAACACTAAAATAATTCTGTTGATCTACGGTTGATATCTGTATGAAGGCATCTGCTGAATGTTGATTTGAGGAGTTACAGAAGCTCAATAACTGTTATAAATACAGATGTTGTGGTCAGGGCCGCTCAGGCTCCAGGTGAGATTCTAGATGATGTAGTTCCTCCTCAAAACAACAAGAGTTTCTGCAAATGCTGATCTGTTGTGAAGCTCAGCTGACACGCTCAGTACAGAGAGACAAGTTTGATCCTGAAGAGTCTCAGTCCTGCAGAGTTTCTCTcaaaccccaatcaaacacatctgaacaaacCAGTCCAGCTTTAAGAGTTTCTCCAAAACTACAGGAAGACCAGCTTTAtcaaaactctgcaggactgGAGACTAATGAGACGTGAACCAAACTGAAGAATCAAACAACACTTCAAATACTTTATTCCCCCAgagattattagattattatcaGTGTGTGTGGGTTTATTTGGTTGTGTGCTGCTGTGAAAACAGGGTGTTTACTggtgattgtgtgtgtttggtttggtCAGGATGTTGATTCTGTGTCTCTCGCTCTTGATCACTAAAGCTGAGTCAGAATccaaatataaaatcaaaaacaaagaGCAAAGTCAGATCATGTCAGAAATGATCCTGTTCTCCATCTACAGTCTGTTCACACAATAGAGTTTGTGCTGTTGTGTAGAGATGATGCTCATACTGTCATATTTGTCATTTGTAGGATTGCAGAAGTCACTATGTTGAGGTCTTTCAGAGCATCTCTTCCTCTGATCTTAGTGATCATGACTGCGGGTGAGTTTTCACTACAGTCACTATAGACAAACTTTAACACTCTTGAGAAGCTGACTGAGCTCCTCACACTTTGTGTCTCAGAAACTGACAGCAGTGTTTTACTGACAGAGACAATAAAAAAGGTCAAAAGtgattaaattttaaaacaatttaaaaactggaaaaaaaattcaaataaattgtaaaagtttgtttgtttaatgcttttcacaataatgatCATTCTAAAGCTGCTTCACAAACGTGCACACTATTACTGCACAACCAAAATCAGCAAGAGTTAGTGTGCTGTGTATAGGGTGGACAGTATATAGAGTCAACCTGCAGTTATACAATAATGTGTACTTTTCAAAGAGGTGACGTATATGcggtttatttatattatacatctttatgtattattattggcatttgtaagagaaatttgagatctgaaaaagtgcacacatacggcctctggcggatttgcaaatataaaaaaatgcacaaaaaaaaaaaaaaaaaaacgtacttcctgggacgtattttgctctctacAGAAATGCATACTGTGGTACGTATCCATGATGAGTCTGGGTTGAAAAAGAGATTTGGTGTAGCTGCTGTTAATATTTTAAGTGAGATATAAATGTGAATATGAAAGGATGCATTTGATGAGATGCATTTCACTGGACATAAACGTATGGGATGGATTGTGTATATGCTTTACTCAAAGAGAAGCCTGTAATCTACTTTTAAACTagtttataaatgtttgttttgtgcatgtctgtgtttCAGGGTGTGATGGTCAGCAGGATTGGGGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003228 True 1704 lncRNA 0.38 1 55437572 55439275

Neighbor

gene id symbol gene type direction distance location
XLOC_000747 NA coding upstream 44540 55392380 ~ 55393032 (+)
XLOC_000746 NA coding upstream 52121 55385192 ~ 55385451 (+)
XLOC_000744 NA coding upstream 67733 55369517 ~ 55369839 (+)
XLOC_000743 si:ch211-286b5.9 coding upstream 83594 55348537 ~ 55353978 (+)
XLOC_000742 NA coding upstream 93721 55326566 ~ 55343851 (+)
XLOC_000749 CR788255.1 coding downstream 13617 55452892 ~ 55453752 (+)
XLOC_000750 adgre9 coding downstream 39378 55478653 ~ 55515184 (+)
XLOC_000751 adgre16 coding downstream 96552 55535827 ~ 55540577 (+)
XLOC_000752 adgre15 coding downstream 124257 55563532 ~ 55574266 (+)
XLOC_000753 adgre19 coding downstream 143841 55583116 ~ 55587666 (+)
XLOC_000735 NA non-coding upstream 246310 55184764 ~ 55191262 (+)
XLOC_000758 NA non-coding downstream 239637 55678912 ~ 55679447 (+)
XLOC_000760 NA non-coding downstream 275643 55714918 ~ 55729126 (+)
XLOC_000761 NA non-coding downstream 278303 55717578 ~ 55721415 (+)
XLOC_000768 NA non-coding downstream 977363 56416638 ~ 56556305 (+)
XLOC_000772 NA non-coding downstream 1121951 56561226 ~ 56604352 (+)

Expression


Co-expression Network