kcnq2 (kcnq2,LOC100537363)


Basic Information

Item Value
gene id kcnq2
gene name kcnq2,LOC100537363
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 28041772 ~ 28127236 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675624.1
CCTCTcatttctctcctctcctcatcCCTATTGGCTTTTCCCTTCTTGCAGGCGTAGCTCGCCCCCCCTCTCGCGCCTCGAACGATGCTGCTACCTGGCAAAGGGCGGAAAACCCCCACGAGCGCGCGCGCCTCTCCATGACAGCGCCGCGGCAAGCATGGTGCAGAAATCCCGCAACGGCGGGGTGTACCCCGGACCGCAGGCCGAGAAGAAGCTGAAGGTGGGCTTCGTGGGTCTCGAGGCGGGCGCGGCGGACTCGAGCCGAGACGGAGCGCTGCTGATCGCGGGCAGCGACGCGAACAAGCGCGGCAGCATCCTGAGCAAACAGCGCTCCAGCATCTCGGGCAAGAAGCCCCCCAAACGCAATGCCTTCTACCGCCGCCTGCAGAATTTCCTCTACAATGTGCTGGAGAGACCGCGAGGCTGGGCGTTCATCTACCACGCTTATGTtttcttgcTGGTCTTCTCCTGTCTGGTCCTGTCAGTCTTCTCAACCATCAAGGAATATGAGCAAAGCTCTGAGGATGCCTTGTACATATTGGAAATTGTGACGATCGTGGTGTTTGGTGTTGAATATATTGTAAGAATATGGTCGGCAGGATGTTGTTGTCGGTACAGGGGATGGAGAGGCAGGCTGAAATTTGCTCGCAAACCGTTTTGTGTAATAGACATCATGGTGCTAATAGCCTCCATATCGGTGTTGGCGGCTGGCACGCAGGGGAATGTCTTCGCCACCTCAGCCATCAGGAGTCTTCGGTTCCTCCAGATTCTCCGCATGATCCGTATGGACCGGCGAGGAGGAACCTGGAAGCTCCTGGGATCTGTTGTCTACGCCCACAGCAAGGAACTGATCACAGCTTGGTACATTGGATTCCTGTGTCTGATCCTGGCTTCGTTCCTTGTGTATCTGGCTGAGAAGGAAGACAATGAGATGTTTGAGACCTATGCTGATGCACTATGGTGGGGCCTGATCACTCTGACGACCATAGGATATGGAGATAAGTATCCAATAACGTGGAATGGGCGTCTTCTAGCAGCGACCTTCACCCTTATTGGAGTGTCCTTCTTCGCCTTGCCTGCTGGAATCTTGGGCTCTGGTTTTGCCTTGAAAGTCCAGGAGCAGCATCGACAGAAACACTTTGAGAAACGTCGGAACCCAGCTGCCGGACTAATTCAGGCGGCCTGGAGGGTTTACGCCACCAACCTCTCTCGCACAGACCTGCAGTCTACCTGGGACTACTATGAGAGGACTGTATCAGTCCCTATGTACAGACTCATTCCTCCACTTAACCAGCTTGATCTACTTAGGAACCTGAAGAGTAAATCTGGCCTCTCCTTCAGGAAAGAAGCTCAACCAGAGCCCTCTCCCAGTCAGAAGGTCAGTCTGAAAGAGCGGGTGTTCTCCAGCCCCAGAAGTTCAGGCAACAAGGGGAAGGGTTCACCTCAGAGCCAGCAGCCGCTGAGGCGTTCGCCCAGTGCAGATAACAGCATCGAAGACAGTCCTTCCAAAGTGCCCAAGAGCCTCAGCTTCTGCGACCGCAGCCGAGCTAGACAAGCATTCCGCTTTAAAGGTGCAGCATCACGCCAGAACTCAGAAGTGCTGATTGAGATGCAGGCAGAAGATTTGAGGCAGAAGAGCTCCCCAGAAGCCAGTCTGCCTGGAGAAGACATTGTTGATGACAATAAGAGCTGCCATTGTGAATTTGTGCCACAAGATTTAACGCCAGGAATCAAAGTTACCATCAGGGCTGTGTGCATTATGAGGTTTATGGTGTCAAAGCGAAAGTTTAAGGAGAGTCTGCGGCCGTACGATGTGATGGATGTTATTGAACAGTACTCAGCTGGACACCTGGACATGTTGGCCAGGATTAAAAACCTGCAGTCCAGAGTGGACCAGATTGTGGGTAGAGGCGCTCAAATCACAGACAAGGACCGCCCCAAAAGCTCCACTGAAGCAGAGATCGTGGAGGACCCCAGCATGATGGGAAGACTTGTGAAAGTAGAGAAACAGGTAATGTCAATGGAAAGGAAACTGGACTTTCTCGTGAACATCTACATTCAGAGAATGGGAATCCCGCAGTCTGAGACCGACGCCTACTTTGCGTCCAAGGAGCCTGATCCGGCCCCTCCCTACCACAGCCCTGTCGACCACATGGAGAAGACTGGCTCCATTACTAAAATCATCCGTTCCAACAGCTCGGCGGGCCAGAAGAACTTTGACCCGCCTCCCTCTACTTGCGTCAACCAGACCCACTGCCACCCGTCCACCTCCTGGCATCCCCACACCCTCCCTGAACCTCCTCAGCGCAGCCAGGGCACCTCCCCTGTGGGTGACCCTTCTTTGGTGCGTATCCCGCCTCCACCCGCACACGAGCGTTCCTCTGGCGGACATAACGGTGGGTCACGAGGTGCTGGACAGCACCACGCTCGTGGGAGTGGGCTGGAGGAGGGGAAGGCGGGAGGACTGTCTCAACAGCAGGCAGGTGCTGAGAGTGACACCTCCATATCCATCCCCTCAGTGGATCACGAGGAGCTGGAGCGTTCCTTCAGCGGGTTCAGCATCTCCCAGTCGAAGGAGAATTTGGACTTTCTCAACAACGCCTACTTTAGCGGTGTGGCACGAAGCTCTAAAGTGAGACCCTATATTGCGGAGGGCGAATCTGATACAGACTCTGACCTCTGTGCCCCTTCGCCTCACTCCGCCACTGGAGAAGGAGCTTATGGGGACAGGGGCTGGACTGGCACCAAGTAACTGCTGAAGAAAGCTTTCTAAGCTGGATTCACTACTGGTGGTGGCAGCGTCCGAAGCCAAACACAATGGGAAACATGGCGAAAAGCTGTATTTGTCGTCTTTAAAACCAGTGCTACGTTTTACAGATACAGCTTCAGTGTCAGTACCAGGATCTTGTGGACTAAGGAACATTTTGGTACTTAGCCATTTCCTGGATCACCTGGAAAGGTGCCACCAGTAATTTCTTCTTTTAAAAGACAAAGTGTCTGTTCACCGGTCATCTTTTATCtctcctaaataaaaaaaaaaaaagaagtgggaaAAGGCATTAGGAAAGACCAGACAGATGAAAAGAGCagataaaactgataaaatatCATGGTACGTCTCTATCTCGAAGCACACACTGTTATAAACTTAAAGCACATCATCCGTTCACCCCTTTAGCTAACGTTCGTCACTCACAATAAACAGGTgatctgatgatgatgatgagatgatgaACAGTTCCATCAACAGTTCCACACTGTCCACATTAGCCCATGAATGTACTTCACAACATGAcagcataatattttaaaatttctaTTCCCAAACACGCCACACTTAGTATATTCTCTTTAGGAACAAAATCACATCGTACCGCTCTAGCAATTATAagagtttcactttaatcctgtATAAAAAAGTACATCACCATCACAATGTCTCAAGTTTACAGCATTTCTATCTAATCCCTGGTTTTAATAATTATACGCATGAATCGGACATTTAAAAGGGATATTTATATTTGCAATTTATTTCTTACTAAAAAACTACTATGGCTTCAAGgaagattacaaaaaaaaagcttaatattacgttttttttttttttttaataataaagagaaGCTCTAAAGCCATATACTAATGTAATGTgtataaactattattaaatGACTTAAAGTATTAAACTTGATTAAACCCCTTTCATACATTAAATCGTATGCATTACAGTCACATCACATCAGTCAGTGATGAAACATTACATCTAATTCTATTTAATtcaaattatttcaattatttaacAGTGAAATAACAgttaattcagtgattttttttttttttttaacaacctgCTGGAAACTTTATGAGAACATTCAACCATAACTTTTTCCAAGCATAGTCAGATCCTGACTGAGATCACTGATCATTTATTGGACCCTGTCTTTGCCTTGCTCTGATCAGCAACCCCTTTACCACTCGAATGTGCTTAGACTGCACATTcctaaaaatggataaaaa
>XM_022675625.1
CTCTcatttctctcctctcctcatcCCTATTGGCTTTTCCCTTCTTGCAGGCGTAGCTCGCCCCCCCTCTCGCGCCTCGAACGATGCTGCTACCTGGCAAAGGGCGGAAAACCCCCACGAGCGCGCGCGCCTCTCCATGACAGCGCCGCGGCAAGCATGGTGCAGAAATCCCGCAACGGCGGGGTGTACCCCGGACCGCAGGCCGAGAAGAAGCTGAAGGTGGGCTTCGTGGGTCTCGAGGCGGGCGCGGCGGACTCGAGCCGAGACGGAGCGCTGCTGATCGCGGGCAGCGACGCGAACAAGCGCGGCAGCATCCTGAGCAAACAGCGCTCCAGCATCTCGGGCAAGAAGCCCCCCAAACGCAATGCCTTCTACCGCCGCCTGCAGAATTTCCTCTACAATGTGCTGGAGAGACCGCGAGGCTGGGCGTTCATCTACCACGCTTATGTtttcttgcTGGTCTTCTCCTGTCTGGTCCTGTCAGTCTTCTCAACCATCAAGGAATATGAGCAAAGCTCTGAGGATGCCTTGTACATATTGGAAATTGTGACGATCGTGGTGTTTGGTGTTGAATATATTGTAAGAATATGGTCGGCAGGATGTTGTTGTCGGTACAGGGGATGGAGAGGCAGGCTGAAATTTGCTCGCAAACCGTTTTGTGTAATAGACATCATGGTGCTAATAGCCTCCATATCGGTGTTGGCGGCTGGCACGCAGGGGAATGTCTTCGCCACCTCAGCCATCAGGAGTCTTCGGTTCCTCCAGATTCTCCGCATGATCCGTATGGACCGGCGAGGAGGAACCTGGAAGCTCCTGGGATCTGTTGTCTACGCCCACAGCAAGGAACTGATCACAGCTTGGTACATTGGATTCCTGTGTCTGATCCTGGCTTCGTTCCTTGTGTATCTGGCTGAGAAGGAAGACAATGAGATGTTTGAGACCTATGCTGATGCACTATGGTGGGGCCTGATCACTCTGACGACCATAGGATATGGAGATAAGTATCCAATAACGTGGAATGGGCGTCTTCTAGCAGCGACCTTCACCCTTATTGGAGTGTCCTTCTTCGCCTTGCCTGCTGGAATCTTGGGCTCTGGTTTTGCCTTGAAAGTCCAGGAGCAGCATCGACAGAAACACTTTGAGAAACGTCGGAACCCAGCTGCCGGACTAATTCAGGCGGCCTGGAGGGTTTACGCCACCAACCTCTCTCGCACAGACCTGCAGTCTACCTGGGACTACTATGAGAGGACTGTATCAGTCCCTATGTACAGACTCATTCCTCCACTTAACCAGCTTGATCTACTTAGGAACCTGAAGAGTAAATCTGGCCTCTCCTTCAGGAAAGAAGCTCAACCAGAGCCCTCTCCCAGTCAGAAGGTCAGTCTGAAAGAGCGGGTGTTCTCCAGCCCCAGAAGTTCAGGCAACAAGGGGAAGGGTTCACCTCAGAGCCAGCAGCCGCTGAGGCGTTCGCCCAGTGCAGATAACAGCATCGAAGACAGTCCTTCCAAAGTGCCCAAGAGCCTCAGCTTCTGCGACCGCAGCCGAGCTAGACAAGCATTCCGCTTTAAAGGTGCAGCATCACGCCAGAACTCAGAAGAAGCCAGTCTGCCTGGAGAAGACATTGTTGATGACAATAAGAGCTGCCATTGTGAATTTGTGCCACAAGATTTAACGCCAGGAATCAAAGTTACCATCAGGGCTGTGTGCATTATGAGGTTTATGGTGTCAAAGCGAAAGTTTAAGGAGAGTCTGCGGCCGTACGATGTGATGGATGTTATTGAACAGTACTCAGCTGGACACCTGGACATGTTGGCCAGGATTAAAAACCTGCAGTCCAGAGTGGACCAGATTGTGGGTAGAGGCGCTCAAATCACAGACAAGGACCGCCCCAAAAGCTCCACTGAAGCAGAGATCGTGGAGGACCCCAGCATGATGGGAAGACTTGTGAAAGTAGAGAAACAGGTAATGTCAATGGAAAGGAAACTGGACTTTCTCGTGAACATCTACATTCAGAGAATGGGAATCCCGCAGTCTGAGACCGACGCCTACTTTGCGTCCAAGGAGCCTGATCCGGCCCCTCCCTACCACAGCCCTGTCGACCACATGGAGAAGACTGGCTCCATTACTAAAATCATCCGTTCCAACAGCTCGGCGGGCCAGAAGAACTTTGACCCGCCTCCCTCTACTTGCGTCAACCAGACCCACTGCCACCCGTCCACCTCCTGGCATCCCCACACCCTCCCTGAACCTCCTCAGCGCAGCCAGGGCACCTCCCCTGTGGGTGACCCTTCTTTGGTGCGTATCCCGCCTCCACCCGCACACGAGCGTTCCTCTGGCGGACATAACGGTGGGTCACGAGGTGCTGGACAGCACCACGCTCGTGGGAGTGGGCTGGAGGAGGGGAAGGCGGGAGGACTGTCTCAACAGCAGGCAGGTGCTGAGAGTGACACCTCCATATCCATCCCCTCAGTGGATCACGAGGAGCTGGAGCGTTCCTTCAGCGGGTTCAGCATCTCCCAGTCGAAGGAGAATTTGGACTTTCTCAACAACGCCTACTTTAGCGGTGTGGCACGAAGCTCTAAAGTGAGACCCTATATTGCGGAGGGCGAATCTGATACAGACTCTGACCTCTGTGCCCCTTCGCCTCACTCCGCCACTGGAGAAGGAGCTTATGGGGACAGGGGCTGGACTGGCACCAAGTAACTGCTGAAGAAAGCTTTCTAAGCTGGATTCACTACTGGTGGTGGCAGCGTCCGAAGCCAAACACAATGGGAAACATGGCGAAAAGCTGTATTTGTCGTCTTTAAAACCAGTGCTACGTTTTACAGATACAGCTTCAGTGTCAGTACCAGGATCTTGTGGACTAAGGAACATTTTGGTACTTAGCCATTTCCTGGATCACCTGGAAAGGTGCCACCAGTAATTTCTTCTTTTAAAAGACAAAGTGTCTGTTCACCGGTCATCTTTTATCtctcctaaataaaaaaaaaaaaagaagtgggaaAAGGCATTAGGAAAGACCAGACAGATGAAAAGAGCagataaaactgataaaatatCATGGTACGTCTCTATCTCGAAGCACACACTGTTATAAACTTAAAGCACATCATCCGTTCACCCCTTTAGCTAACGTTCGTCACTCACAATAAACAGGTgatctgatgatgatgatgagatgatgaACAGTTCCATCAACAGTTCCACACTGTCCACATTAGCCCATGAATGTACTTCACAACATGAcagcataatattttaaaatttctaTTCCCAAACACGCCACACTTAGTATATTCTCTTTAGGAACAAAATCACATCGTACCGCTCTAGCAATTATAagagtttcactttaatcctgtATAAAAAAGTACATCACCATCACAATGTCTCAAGTTTACAGCATTTCTATCTAATCCCTGGTTTTAATAATTATACGCATGAATCGGACATTTAAAAGGGATATTTATATTTGCAATTTATTTCTTACTAAAAAACTACTATGGCTTCAAGgaagattacaaaaaaaaagcttaatattacgttttttttttttttttaataataaagagaaGCTCTAAAGCCATATACTAATGTAATGTgtataaactattattaaatGACTTAAAGTATTAAACTTGATTAAACCCCTTTCATACATTAAATCGTATGCATTACAGTCACATCACATCAGTCAGTGATGAAACATTACATCTAATTCTATTTAATtcaaattatttcaattatttaacAGTGAAATAACAgttaattcagtgattttttttttttttttaacaacctgCTGGAAACTTTATGAGAACATTCAACCATAACTTTTTCCAAGCATAGTCAGATCCTGACTGAGATCACTGATCATTTATTGGACCCTGTCTTTGCCTTGCTCTGATCAGCAACCCCTTTACCACTCGAATGTGCTTAGACTGCACATTcctaaaaatggataaaaa

Function

symbol description
kcnq2 Enables ankyrin binding activity; calmodulin binding activity; and voltage-gated potassium channel activity. Involved in potassium ion transmembrane transport. Is integral component of plasma membrane. Part of voltage-gated potassium channel complex. Implicated in benign neonatal seizures and developmental and epileptic encephalopathy 7.

NR:

description
PREDICTED: potassium voltage-gated channel subfamily KQT member 2 isoform X2

GO: NA

KEGG:

id description
K04927 KCNQ2, KV7.2; potassium voltage-gated channel KQT-like subfamily member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675624.1 True 4017 mRNA 0.48 16 28041772 28127236
XM_022675625.1 False 3968 mRNA 0.48 15 28041773 28127236

Neighbor

gene id symbol gene type direction distance location
ralgapb ralgapb coding upstream 18953 27976381 ~ 28022819 (+)
snta1 snta1,LOC107681301,LOC107587638 coding upstream 401409 27576234 ~ 27640363 (+)
tfap2c tfap2c coding upstream 1695999 26323691 ~ 26345773 (+)
rtfdc1 rtfdc1 coding upstream 1722279 26271043 ~ 26319493 (+)
LOC111193668 NA coding upstream 1967321 26069067 ~ 26074451 (+)
arfrp1 arfrp1 coding downstream 14692 28141928 ~ 28149421 (+)
stmn3 stmn3 coding downstream 26871 28154107 ~ 28167135 (+)
LOC103025927 NA coding downstream 45338 28172574 ~ 28198880 (+)
sp7 sp7 coding downstream 97423 28224659 ~ 28229015 (+)
LOC103025620 LOC103025620,LOC108431823 coding downstream 144585 28271821 ~ 28292098 (+)
G114110 NA non-coding upstream 35423 28005507 ~ 28006349 (+)
G114026 NA non-coding upstream 375797 27661540 ~ 27665975 (+)
G114020 NA non-coding upstream 395622 27642654 ~ 27646150 (+)
G114021 NA non-coding upstream 404232 27551064 ~ 27637540 (+)
G114011 NA non-coding upstream 526904 27513399 ~ 27514868 (+)
G114154 NA non-coding downstream 44275 28171511 ~ 28171989 (+)
G114159 NA non-coding downstream 89971 28217207 ~ 28217435 (+)
G114168 NA non-coding downstream 170258 28297494 ~ 28297775 (+)
G114162 LOC108431801 non-coding downstream 185404 28312640 ~ 28316397 (+)
G114191 NA non-coding downstream 277973 28405209 ~ 28455339 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other upstream 552250 27391014 ~ 27489522 (+)
G113979 snrpb,LOC101173217 other upstream 689328 27347449 ~ 27352444 (+)
ube2o ube2o other upstream 2644789 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 2779551 25261386 ~ 25262221 (+)
LOC103030782 NA other upstream 2787642 25250384 ~ 25254130 (+)
LOC103044650 LOC108427558 other downstream 1080507 29207743 ~ 29281311 (+)
LOC111193669 NA other downstream 1755135 29882371 ~ 29887978 (+)
G114698 NA other downstream 1999099 30126335 ~ 30129896 (+)
G114841 NA other downstream 2723073 30850309 ~ 30880553 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 3766049 31893285 ~ 31894351 (+)

Expression


Co-expression Network