LOC103025927


Basic Information

Item Value
gene id LOC103025927
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 28172574 ~ 28198880 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675627.1
TCTCTGGGTTTTcataaaagtgaaagtgaaaccTAAGCAAGCTCTGTCACTGGCTCTGCTCTGTTCTCAGTAAACTGCAACATGAGCAGCCGGTCTGTGCAGGGTTGCTAGGCAGGACGGGACACAGACAGGGCGGGGAAAGggtataaatattacatccacACTTCCTGATCAGCACAGATGGCTGATACACAGATGACTGCTGGAGAAAAACAATGCTTCTATTTCATACTGGGATTTAAAGACACATCTTTATGGAAATATCTTCATTAGAATAAAGAAAAGGgtaaATGGCCTGTAATAAAACCATGCTGCTTGCTGGAAATACAAACCTACGCAGGTTACAAACAACACATGATTTGTGTGTAGTATGTAGACAATGCTGTAAATGGACAACtgatatatcatataaaatcgTGTCCATTGCTCACCGGTGCTCAAAAGACATTATATTAGTCAGACAAAAGGGAAACAATGGCCGATGGAGACCAGTGGCCCAACGGCCAAAGTTCCCAAACCCTGCGAAGTATGAAGTGTGCTGGCACTATATTGAGGGGAAAGGATGTACAGTACATGGGAATAGGTGCTCTTATGCAAGAACCACTGAAGAAGCAACAGTGTGGAACTTCATGAAGAGAGAATGCCTTGAGTTTACCCAGCTCATTAACATGTTACCCAATGGCTCTACATGCTCTACCTCTCAGGAAAACCTGGCACCACCACCAGGAAGCTCCAGCGCAGTGCAGAGAATCCTTTCCTCATTCCAAGGAACATTTGTGGAACTCTGCAGTACCTGCTTTCATGAGAGTCCTCAAAAGATTTCCTCAAGAAAGCAAGCAAAGTGTTGTGTTGGACACAACTGGAAACCCACTCTGGTCTTTTGCCAGAAGGGTGAGCAGAGACGGGTGGGCTACGATGAGATCCGGCACCTGCCTAGGCGAACGTATAAGAAGTGGAGGTACTGTAAATATGTGGAGaacaatgagaaatgcctgCATGGTGCCAATCGCTGTTGGTTTGCTCACAGTAGCATAGAGAAGATGGTGTGGGAGTTAGAGACTACAGGAAGTCTAGATCGTACTCTTCTCCTCCAGGCTTCCCAGCAACGTCAACCACAAAGTTCTGGAGCAAGCTCACGCCAAGCGCCCCAAGAACAGGAACGACAGCACTACTGCCACGTGTGTGAATGCCAATTCCAAACAAATGAGGACTTTATGAATCACTGTTTCactataaaacacagaaaactggTTTTCGGAGACATGCCCTCTGCATGGCGTTACCGTGAACCACCGCTAACAAGCAAAGTCTTTAAGCTGTGTGAAAGACGAAGCACATGTGAGTATGGAGATAGCTGCATGAATGCACACAGTATGGAGGAACTTCAGGAATGGCGAAAGCGACACAAGTTTGTTCGGACAAAACTCAAAGCAGTCGAGGAGCATGGAGTTCTGTCCTACCAGGACTCTCTGCTAGAAGAGTACAAGCAAAGCCCTGACAAAGAAATGATTATGAGGGAAACTGTTCCATATGCATCTGTTAGCTGTGATTCTGATCTCAGCATCTTTGTAAGACAAGAGAAGATATATCACATGTGGAAATTCACCATTACATCAGAGGAAGCTCTGGATGTGGTTGCTTTAATGAGGCAGGACATTGGGGCAATGTTTACCCTTGGTGAGGATGCAGGTGAAGAACGATCATACTCCGAAAGCGTTTGGTTTCTAAGGGGACACTCAACCAACAATAAATTTGtgTATGACATTATAGTGTCCTTCACATCAGAACGACTCGGCCTCTATGAACAATGGCTGGTGTTTGACTTTGATAGAAGGCCAGTTCTGCTGCAAAAACTCCAAGTCAGAGTAGGGGAAGCCTTCCGACACCTTGAGACACCAAGCAGTAGTGCACTGGAAGAAGAGAGGGCTAAACACTCTCTACAGGTCTGGCAAGACGGCACTGTAGAAATTGTCCCAATCTTGGAAAGGACAGAGCAGGAGAATGAACTGCTACAAAGGTACCGGCCGACAATGGGACACCCGAACAAAGGGACCAACGGACTTGGCTCCATCAACTATAAGAATTACAAAGAGAAAATGCACTGTTTTCTTTACCGAGAAGAAATAACAGAAGATCAGCTGGTTAGAAGGCTGAATCTACGAGGGAAGATGTCtcttaaaaagatcataaaccaATGGTATGAAACTAAATTTGCCATTCCAGGGGAGCTTTTTGGCAGCGTGTCTATCGCCCACTCCCTCACTCCTGATACACCAGAGGGCTACATGCTGAAGAGGCATGTTCAGTCAGCCCTCGTGGGCCTGCCGAGTCCTAAAGCTGGCCTTCAGCGTGTGTATGAGGCTATAGTTCTCAAGGACATGGTTGGTGAGACAGAAGTGCATTTGAGCCTCTCAGGAAAATGCTGCACTGAACTGAATCTCAATAATGAAACCACGGTTGAGATGGAGATTCAGTTCCAGTTAGACCGCTTGGGGTTCTGCGATATGCACAAGGCTGTGGACATCTTGCCAGACCTTAGTAGGGTCTTACCTGACCTGACAGACAGCAATGCCCCAGTTCCAATCAAATCAAGTCCAGGAGAGCTCAATGAAAAGCAGCAAGCTGCTATGGACTTCATACTAGGAACATCTGACCAAGAAGGTAACACGGCTCCACTGCTGATATATGGGCCTTTTGGAACCGGAAAAACTTTCACTCTTGCGAAGATTACACTGGCCCTGGCAAAGAAgccacaaaacaaaatactgatctgcacacacacaaacagCTCTGCTGATCTTTACGTCAAAGATCATTTCCACACTAGTGTGACAACTGCTGACGATGCAGCCAGACCTCTCAGAATAAAAGCGAAGGAAATTCCTCTCAAAACTACTCATCCCTACACTCTACAGTACTGCCATTTATCCAAGGATGGATACACTTTTGACTTTCCTGACACTGCAACATTGGATGCAAAAAGAATCATTATAACAACTACTACACTGGCACGATTCTTCCACGACCTGCAGCTTCCACCCAACTACTTCAGTCACATTTTCATTGATGAAGCCTCTCAGATGCTGGAGTGTGAAGCACTGATGGCTCTTGGCTTGGCAGGAGAGAAGACTCAGGTCGTTTTAGCCGGAGATCACATGCAGATGGGACCCAGGCTTTTCTCTGTGGAGGAGGACAAACGCTCAGACCATACCATCCTTAATCGTCTGTTCCATTACTATCAGTCAGAGAACACCACTACTGCCAAAAACAGACGGATTATCTTCAACGAAAACTACCGCTCCACAGTAGAAATCGTGGATTTCGTGTCCACCCATTTCTATGTTGGCAAGAAGGATGTGATCAAAGCCAAAGGAAATGTCTCTCCTCACCCAGACCAATGTGCTCTACAGTTCGTCCATGTTCGTGGAGAATGCCATTTGGACTCAAGGACCTTGACTTGGTTCAATCCAGTACAAATTCAAAGTGTCGTTGAGGTTGTCCAGGATGTACTGAACAAATGGCCTGAGAAGTGGCAAGAGCGGGATCCAACATCTATCTGTGTCGTTTCACAGGGCAGTCAGGTGACAGAAATAAGAACCAGACTAAGATATGCAAAACTCGGTTTGGTCACAGTAGAGAATGCAGAAAACGTGCaagGAAAACAATTCAGAGTGATCATAATAAACACTGTGCACACCAAGGACAGCCTGAATGTCTCAGAGGAAACCTATCTTGAATTCTTCAATGACATGCGTGTGCTGAACACAGCCATGACCAGAGCTCAGTCCCAAGTAATTGTAGTCGGAGATGCTGCTGCTCTTTGCTGCTCCTACTTTGGAAAGTGCTGGAGGCTGTGGAGGTCTTACATAGAGCATTGCATCAACAGAGGGAGTGTTTATCCTCAAGACTTCACCTTAAACAGTTTGAAGCAAGAACTTCTAGAACTCTCAAACATGATCAAGACTGAGGATGATGACAGCAGTGACGATGAATCAACCACTTCAGAGCCATCAGACACTGAGGAGGACCCCATACTGAAAGAGCTACTGGATGAGCATGATTTGCAGATCAATTTAACTGAGGAAGGACTGTTTCCTGTTTTACGCTCTGACAATCTTGACAACAATCTGGTGAGGTACATGAGGAGGAGCGAATCTCCCGAATCACATGGAGCACAGCAGAACAGCTCTGATATTTACAAGTGTGAGATCGTTTTGGAAAGGTATGACTCAGGCTATGCCATGCCACTTGATGAGCCCGCCTTACGCATAGACATCAAAGGCAGGCATAATTTGGGACAATCGTTTTCTGGAGATGTGGTAAGTGTGGAGATTTTGACCTCTGAGACATTTCCTCCTAAGGGAAGAGTGATTGAAGTGCTCAAGCATTCAGCTTTGACCAAAGAGTTTGTCTGCACCATTGACACGAACGATAATCAAGTGATGACACCAATTAACATCTGCATTCCTAAATTATTCACACCCTTTTGGAAGgacaaaccaaaccacattGCCATCAGAAATCCCGAGAAACGGAATGCAGAGAAGTTCATCAGGATTAACGAGAAAGCCCGCAGGAACCATCTCTTCGTTGTCAAATTCTTAAGATGGGGGAAGCGTTTCAATTACCCTTTGGGAATGGTGATCAATGTACTTCCCAAAGTTACTTCACTAGAGGAAGGATTGAAGGTACTTGACAAAGAGTACCAACTGGAAAGAACTGTTCCTCTGCCTGTTCAAAAAGAAATGGAGAGTTTCAAAACAACTCCTTTACTCACAAATGGCCGGAAAGATTTCCGTGACCTACTGACATTCACCATTGATGCTCCAAAATCACAAGACCTTGATGATGCCATTAGTGTGAGAGATTTAGGAGAGTGCTATGAAATAGGGATTCACATAGCTGATGTCGCGAGCTTTGTGGATAAAGATAGCAAACTGGACAAGTATGCAAGACAGCAAGGAACTGCATTCTATGTTTCAGAAAGGGAACCGACATATATGTTCCCTGACAAATTGAGTACCAACGACTTCAGTTTACTCCCTGGCAGTGATCGACGGTGCATTTCCTTGATGACTGAAGTTGACAAGAAGACACATCGCATACAAAAGAGAACATTTTACAAATCAGTGATTCGCTCCAAGAAAAGGCTGTCATACGAAGAAGCTGAAGAAATCCTAAGATCATCAGGCAACAATGACTTCGACACTTTGGAGGGGTGTCTTGTCAAAGCATTCCAGTTTGCTGAGGTTCATCGGAAATGCAGAAAACAGAGTGACTGGTGCTACAAATCTCCTGACGAGGATGTAGTTATTGGAAGAAGACAGTCTCAGAAGCTGGTGGAGGAGCTGATGATCATGTTTAACCACACAGTCGCTGATCGGCTTCTGTCCGAGAAGAAAACTACGAGTCTAACTCCTCTTAGGTGCCAGGACAGGCCAAATCCGGACGAGCTTCATAAATTCTATGAAAGAAATGTCCCTATGCTTCCGATGTCCATTCATTTGTCATCCCAACTCAATCATTATGAGAAGAATGATGATACTGAACAGGAGACATTCTTCCCTATATTGACATCTGTCTTGAGGAATCTTCAGATTGCTGCACAGGAAAAAGATGTCTACAAGTTACTGGATCTCATTACAACCGATGATCTTCACCCCCTACTTCTTCCTCTCGTGATTAACTTAAGGAGGCTCATTTACAAATCACATGTATTGCGTGCCAACTCCACGCACACCTCCCGCATTGGGCACTATGATTTGGAGCTTGACTGCTACACCTGGGCTTCTTCTCCCATCCGACGCTATGTAGATGTCATTGTACAGCGACTTCTTCACTCTGTACTTGAGGACGATAGAGTACAGTACACTCCACAAGAAGTTGATCAGTGCTGTGTTGATTTTACCCTGAGAAACAGCAATCAGTCTTCATGCCAGAGGGCATCTCATCATTTGAGCTTTGCATCAAAGCTGTCTGctcaaaatgaagaaaaactgGCGTACATTGTTGAAGTGAGTCCTTCTGGAAACAACTTCCAGATAAGCTTTCCACTCAACAGAACCTCCCTGCCAGACACAGTGGGCATAATGTACAGAGATCTCCAGTTAGAGGATCAACCAAGGTATATTGAAGCAACTGACTGCATGGTACTGCGATGGAGGCGAAGGGTGTATTCTTTAACTAGTCCCAGCATCCATACTGAGCTGAAGCAACACGAAGCAAACTCACGTGGCAAGTTCATAACTGACGTGCCTATGGAGTCCTGGAAACGCTTGGTGTCTGCTATCAGAAAGGAAGAATGGGATGTCATGTTTGAGGAGGTTGAACAATTAAGCTTGACTGATGTGAGACGAAAAACAACCGTGCAGCCAGCATTAATTGGAGCAAGGATGGATATGTTGAATCAGAGAGAGGAGCATTACATTGAACTGTCTCTGGAGCTGAAAAAGGGCAAAATGATCGAGGTACAGTTGGGAACGGACACTTATCGGGGACTTTTGGTACCATCCGTTCAACTGCTTGTTGTGAACCCGAAATTTGAGATCTGCTTGGAGCACACAAAGAATCCAATCATGTGCTTTTCAAAATATGCACTGTTCTCCTCAAGTGAATCATACAGCTCTTACATGGAGTATCAGAGAATATGGAAACCTCTGTGCGAAATGGAGTCGGCCTGTAGCGCTGTGGCCGAAAACGAGAGCATCGTCATTGAAGATGCATCGCTGGAATGGGACAGGTCCAAAGATGACCTCTGGGGATCTTTTCGCATGCCTGTTGACAAGAAAGCTCAGTGGGCTATTGAGTCAAACCTGAGAAACTGTTTCCTATGCATCCGGATGAGAATGCAGCAGAAGGACCAAAATCCAATTCTGGAAGACTCTGATTCTAAAGATATGGATCTCGTGGATGTTCCTGGTCTCATTTGGATTGCTCACGCAGTAGTCACCAAAGTCACAGGAGAAGAGAAGTCAGTGAAGTCGACATACACAAAGATAACTTTCCGTGTCAACCACATGCCCATGACAAACATTCCAGAAAAGGTCTTCATGGAGGGGACAAGGTTCACAGTGGAGCTGATACCAAAACTACTACCAGATGTACGCAAAGATAACGCCATTGAGAATCTTACATCAGCTAACAACCTTGTGAAAAACATTGCCATGGGTAAAAAGACACAAGATGAAAGAAACACAATCCAAAAATGTAATCAACCCAGATTTGAGATTGAGAATCATCGTTCTTTGGGGTATCCACAACTGAACAACAGTCAATGCAAAGCCATAAGGGAAGCAATGAACAACGAGTTTACTCTTATCCAAGGACCACCAGGGACTGGAAAGACTGTAGTTGGCGTCCACATTGTGTACTGGTTCttcaaacaaaaccaaaaacttCCACCTTGTCAAAAACTTGGTGATGAAGACCTAAAGAAGAGATGCATTTTGTACTGTGGCCCATCCAATAAGTCAGTTGATGTGGTAGCAGGTCAACTCCTGAAGcttaaagagaaattaaaacCACTGAGGGTCTACAGTGACCAAGTGGAGATTATGGAGTTTCCTTACCCGGGCAGCAATCTGAAGATTTCCCGTCACTGTCAAAGAGTGGAAAAACCCAATGAAGCACTCAGGTCCATTACTTTGCATCACAAGATCCGCATGACAAGCAATCCCTACCACAAGCAAATACTGGAATTTGATGAGAGAATCAAAGCAGACCAGTACCTCACTGATGAAGAAATAAAATGCTACAAGGACTGTCTGAAGAAAGCTCGTAAACATGAGCTGTTGCAACATAACGTCATCCTCTGCACTTGCACCGCTGCCTCACATCCCGTCCTGGCTGATGCTCTCAACTTTCAACAGATCATCATTGATGAGTGTGCCATGGCAACAGAGCCTGAGGCCTTCATTCCCTTGGTCACACACAAACCAAAGCAGATTGTTCTCCTAGGAGATCATAAGCAGTTGCAGCCTGTGGTCCACACGGATTTGTTGCAGAGGCTGGGAATGAGGATATCTCTATTTGAACGTTACACAAACAAAGCACTGATGCTTGACACTCAGTACCGCATGCAAAAAGACATCTGTGCGTTTCCCTCTGAAGAGTTTTACAGGGGAAAACTGAAGACTGGAATACCTGAAAGGATGAGTGTTTTCTTGAACATTTATCAAAATCCAACCTCCATCCTCTTTGGTCATGTGGAAGGAAAGGAGTTGAGTCTAGTGGTCTCCACTGAAAGAGGGAACGAAAACTCAAAAGGCAACATTGAAGAGGCGAAGGCAGTGgtACGAATTGCCAGAAATCTGATCAAATCTGGAATAAAACCGAAAGAAATTGCAATCCTGACACCGTACAATGCTCAGGTCAATGAGATCAGTACGGTCCTGAATACAAATGGCATTAGAAATGTCACAGTGAACACCATCATGAAGAGTCAAGGAAGTGAATGGAAGTATGTCATCTTGTCTACTGTACGCTCTTTTCCAATGTCGGAAATTGAAATACAACCAACAAAAGCCTGGCTCAAAAAGAGACTCGGATTTGTCATGGACCCCCACCAAGTAAATGTGGGCATCACCAGAGCCCAAGAAGGGCTCTGCCTTATTGgaaaTAAGAACTTGCTGCGCTGCTGCTATCTGTGGAGAAAACTCCTGACACACTATGAAGACAAAGGATGTTTGGTGGATCCTGCCTGGAACATCCAGTGTACACTTGCCTGAGCTACAGTGAGACCACAGAATAAACTGTTGCACTAGTAATTAATGTACAGCTATCTTGTTTTTCATGTTGTCATTGTTGTAcaagttaatgttaatgtttcatgcatttgtatttaatcattctgtaaatattgtaataaagagaataattaatataagcattttttatattctgtttgtATATAAGAAAAAAGTAGTTGCTTGTTTTGATCGTGGTCATAAAATATTGTACAACATTGTAATACAAAGTGCgattttacaattttatgatttattaaatgttattaaatgttgCTAAGCAAATGAA

Function

GO: NA

KEGG:

id description
K25165 HELZ2; helicase with zinc finger domain 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675627.1 True 9033 mRNA 0.44 21 28172574 28198880

Neighbor

gene id symbol gene type direction distance location
stmn3 stmn3 coding upstream 5439 28154107 ~ 28167135 (+)
arfrp1 arfrp1 coding upstream 23153 28141928 ~ 28149421 (+)
kcnq2 kcnq2,LOC100537363 coding upstream 45338 28041772 ~ 28127236 (+)
ralgapb ralgapb coding upstream 149755 27976381 ~ 28022819 (+)
snta1 snta1,LOC107681301,LOC107587638 coding upstream 532211 27576234 ~ 27640363 (+)
sp7 sp7 coding downstream 25779 28224659 ~ 28229015 (+)
LOC103025620 LOC103025620,LOC108431823 coding downstream 72941 28271821 ~ 28292098 (+)
LOC111193756 NA coding downstream 143107 28341987 ~ 28349481 (+)
LOC111193755 NA coding downstream 153103 28351983 ~ 28361479 (+)
dctn2 dctn2 coding downstream 230361 28429241 ~ 28454020 (+)
G114154 NA non-coding upstream 585 28171511 ~ 28171989 (+)
G114127 NA non-coding upstream 42282 28066690 ~ 28130292 (+)
G114110 NA non-coding upstream 166225 28005507 ~ 28006349 (+)
G114026 NA non-coding upstream 506599 27661540 ~ 27665975 (+)
G114020 NA non-coding upstream 526424 27642654 ~ 27646150 (+)
G114159 NA non-coding downstream 18327 28217207 ~ 28217435 (+)
G114168 NA non-coding downstream 98614 28297494 ~ 28297775 (+)
G114162 LOC108431801 non-coding downstream 113760 28312640 ~ 28316397 (+)
G114191 NA non-coding downstream 206329 28405209 ~ 28455339 (+)
LOC111193758 NA non-coding downstream 535510 28734390 ~ 28736858 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other upstream 683052 27391014 ~ 27489522 (+)
G113979 snrpb,LOC101173217 other upstream 820130 27347449 ~ 27352444 (+)
ube2o ube2o other upstream 2775591 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 2910353 25261386 ~ 25262221 (+)
LOC103030782 NA other upstream 2918444 25250384 ~ 25254130 (+)
LOC103044650 LOC108427558 other downstream 1008863 29207743 ~ 29281311 (+)
LOC111193669 NA other downstream 1683491 29882371 ~ 29887978 (+)
G114698 NA other downstream 1927455 30126335 ~ 30129896 (+)
G114841 NA other downstream 2651429 30850309 ~ 30880553 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 3694405 31893285 ~ 31894351 (+)

Expression


Co-expression Network