LOC111193756


Basic Information

Item Value
gene id LOC111193756
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 28341987 ~ 28349481 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675632.1
TTTTCATTGCACAAGTTCAAGTTTGCTTTGATGAGTCTGTAGGCAGGCTAACATAACGGTGTGCAATGACCAGGAACAAGTTCATTTTATTAATGATATCAGCAATGCTGTGGTCTTTTGTTTTCAGCCATGAAACTGATCAAACAACAGACTATCCCTCTGAATTCTCACCAAGAACAGTCCAAATAGGGCGGCTGTTTGTCCGAATAGGAGCTGAAGGAGAGGGAAATTTGCAAAATGGACTTCCTGATGATGCTGAAGGACATCCCTCTGATTCACAAGCAACTGCAGGCTCATATAAAACAGCAGAGACAAAATTGCAACTTTTGAATCCTTCTGTGCATTGTGGTGGTGATTCCATGGCCCTACGTATTCAAGGTTATCGTTTGCCCAGCTTCATGGTTGATCGAGgTGAAGAAGGGGTTGTTCCTGTGACCAAGTTGCCTGCCAATTGCGGTATCTCCACGAAGCGGGTTCGTAGGGATGTTCTTGTAGTTGCTCAGTATCAAGGCTGCCACGTAACAAAAGAGGGTGATGACTATGTTCTGCCTCTACGCTTGTGGGGTGCTTCATTGAATTTGTGCTGTCCTGTAGCGTCATCTACTGATGGGACACCTGACCCTTCTGCAGTTCTTGCCAGTGTTCCTGAACAGAACTGGCCTCTTTCAGGCCCTTTTCCTTACTATCTGGGGGATCAGTTTAACTATGATGGGTATTTTTGGCACAGCCCTGCAAATGCCCCCAGCATAGCAGCCCCAACTCCTGCCCCTACCACAGAAGCCTCAACTCCTGCCTCTACCACAACCTTAAGTGTCCCTGCCAGTGACCCTCTACAGGACTGGTATGCTCTTGGCCCTGTTCCTTACCGCTATGGGTATCCACCTGAGAATTACTGGAAAGCCCCAACTCCTCGCCCCAGCACAGCAGCACCAACTACTCCCCCCAGCACAGCAGCACCAACTCTTGCCCCAACCTTCCCTGCCAGTGACACTCCACAAAATTGGTATCCTTTTGGCCCTTTTCCTTACAACTATAGGTATCCATATATGCCTTTCTGGCAAGCCCCAACTCCTCCCCCAAGCACAACAGCCCCAATACCTCCCCCCACCACAGCAGCCCCAACTCCTACCTCTGCCCCAGCCCCAAATGTCCCTGCCAGTGACCCTATACAGAATTGGTACCCTACTGGGCCATTTCCTTACCAGTGGCAGAATCCATTTCGCCCATATGGTAACATCTGGCAAGGCCCCACAACAGCAACCAGCACACAGGCCCCAACTACCACAACCCCTACTACCACAACATCAGCTGTGCCTACAGTCCTTGCCAATGACCCTCAAAATAATTGGTATCCTATTGACCCTCCTCCATACCAGTGGCCTCCATTTTACCCAAATGGGCGTTTCTGGTACTACCCCACAGCTGCACCCACCATAACTGCTCCAACTTCAGCAGCCCCCACAACAACCTCAGCCCCTACAGTCCCTGCCAGTGACCTACAACAGAACTGGTTCaatccaaatgttttttacCCCAATGGCTACCCTTGGATGCCACATGCAGGAAGACCTCGGCTTACCTCAAGTCACTTAAACAAACAGTAAGGGGAGAAGGAACCTGCAGCCACGATTTGTCCTAAAATGCCCTTTTTGACTAGGTGTCAGTTAACATGGTCCTGTACGTTTTCTTGCTCACCCATGCTGATACTTTTCAATAAAGTGGTCAAATATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675632.1 True 1732 mRNA 0.49 4 28341987 28349481

Neighbor

gene id symbol gene type direction distance location
LOC103025620 LOC103025620,LOC108431823 coding upstream 49889 28271821 ~ 28292098 (+)
sp7 sp7 coding upstream 112972 28224659 ~ 28229015 (+)
LOC103025927 NA coding upstream 143107 28172574 ~ 28198880 (+)
stmn3 stmn3 coding upstream 174852 28154107 ~ 28167135 (+)
arfrp1 arfrp1 coding upstream 192566 28141928 ~ 28149421 (+)
LOC111193755 NA coding downstream 2502 28351983 ~ 28361479 (+)
dctn2 dctn2 coding downstream 79760 28429241 ~ 28454020 (+)
ddit3 ddit3,LOC106582666 coding downstream 137227 28486708 ~ 28492312 (+)
arhgap9 arhgap9 coding downstream 168150 28517631 ~ 28589490 (+)
r3hdm2 r3hdm2 coding downstream 420744 28770225 ~ 28847355 (+)
G114162 LOC108431801 non-coding upstream 25590 28312640 ~ 28316397 (+)
G114168 NA non-coding upstream 44212 28297494 ~ 28297775 (+)
G114159 NA non-coding upstream 124552 28217207 ~ 28217435 (+)
G114154 NA non-coding upstream 169998 28171511 ~ 28171989 (+)
G114127 NA non-coding upstream 211695 28066690 ~ 28130292 (+)
G114191 NA non-coding downstream 55728 28405209 ~ 28455339 (+)
LOC111193758 NA non-coding downstream 384909 28734390 ~ 28736858 (+)
LOC111193757 NA non-coding downstream 387384 28736865 ~ 28755521 (+)
G114318 NA non-coding downstream 475234 28824715 ~ 28827924 (+)
G114390 NA non-coding downstream 523126 28872607 ~ 28872896 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other upstream 852465 27391014 ~ 27489522 (+)
G113979 snrpb,LOC101173217 other upstream 989543 27347449 ~ 27352444 (+)
ube2o ube2o other upstream 2945004 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 3079766 25261386 ~ 25262221 (+)
LOC103030782 NA other upstream 3087857 25250384 ~ 25254130 (+)
LOC103044650 LOC108427558 other downstream 858262 29207743 ~ 29281311 (+)
LOC111193669 NA other downstream 1532890 29882371 ~ 29887978 (+)
G114698 NA other downstream 1776854 30126335 ~ 30129896 (+)
G114841 NA other downstream 2500828 30850309 ~ 30880553 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 3543804 31893285 ~ 31894351 (+)

Expression


Co-expression Network