stac3 (stac3)


Basic Information

Item Value
gene id stac3
gene name stac3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 28849141 ~ 28864783 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675642.1
GCTCCAGCCAGAGTGGAACCAGAGCAGCGCTTGTACAGTAAGCGCCCCCTGTTGGTTTTAGAAAAGGTCTACAGCTGAGTACATCCAGAGTCAGCAATGTCACAGTATGACCAACTGGATGACAAGGATTCTGTGGACATCCATGACCACCCTCCTGCTCCAGATAACGTGGTGAGAGAGGAGAACAACACGGTCTACTTCATTTACGATGAAGAAGTAGAGgtggaagagaaagaggaacCTCCTCCTCCTGAGCCGGTCAAGCCTGTCAACGATAAACCGCACAAGTTTAAGGACCACTACTGCAAGAAGCCCAAGTTCTGTGACGTCTGTGCACGCATGATCGTTCtcaaTAATAAATTTGCACTGAGGTGTAAAAACTGCAAGACGAATATCCATCATCAGTGCCAGACCTACGTCGAGTTCCAGAGGTGCTTTGGAAAAATCCCTCCAGGATTCAGACGGGCATACAGCTCTCCTCTTTACAGCAGTCAGCAGAATGCCACCGTTAAAGAGCTGCTTCCCTTTTCGCAGTCTAACCGCACTGACCCTGTGTACGAGACGCTGCGTATCGGGGTCATCATGGCCaacaaggaaagaaaaaaagggtcTGAAGACAAGAAACATatgatgatgatggaagAAGAGGAATCGCAGCCAAAAGCTGAGGAAGGAGCAGCAGAGGAAGTGAACCAAGAGACAGAGAAGAAAGGGGacaaagcagcagcagaagacaaGATGAAGAAGCCTGTGCTGGGTAAACTGGGGGTCTTCTCTCAGTCGCACTACTATCTGGCTCTGTACCGGTTTAAAGCCATCGAGAAAGATGACCTGGACCTGCATCCAGGAGACCGCATTACAGTGATAGATGATTCCAATGAGGAGTGGTGGAGAGGTAAGATTGGTGAGAGATCTGGCTTCTTGCCAGCCAACTACATCATCCGAGTGCGCTCAGGGGAGAGAGTGTACAAGGTAACTCGCTCCTTTGTGGGGAACCGAGAGATGGGCCAGATCACGCTGAAGAAAGACCAGATCGTGGTGAAGAAAGGAGATGAGGTAAATGGCTATCTGAAGGTCAGCACTGGACGCAAGCTTGGCTTTTTTCCTGCAGATATCCTCCAAGagatctgagtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgcagacattaaaacaagtgtaaaaaaaataaaaa

Function

symbol description
stac3 Predicted to enable metal ion binding activity. Acts upstream of or within several processes, including T-tubule organization; regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum; and skeletal muscle contraction. Predicted to be located in cytosol. Predicted to be part of voltage-gated calcium channel complex. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Is expressed in adaxial cell; musculature system; and somite. Used to study Native American myopathy. Human ortholog(s) of this gene implicated in Native American myopathy. Orthologous to human STAC3 (SH3 and cysteine rich domain 3).

NR:

description
SH3 and cysteine-rich domain-containing protein 3-like

GO: NA

KEGG:

id description
K23713 STAC3; SH3 and cysteine-rich domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675642.1 True 1205 mRNA 0.49 13 28849141 28864783

Neighbor

gene id symbol gene type direction distance location
r3hdm2 r3hdm2 coding upstream 1786 28770225 ~ 28847355 (+)
arhgap9 arhgap9 coding upstream 259651 28517631 ~ 28589490 (+)
ddit3 ddit3,LOC106582666 coding upstream 356829 28486708 ~ 28492312 (+)
dctn2 dctn2 coding upstream 395121 28429241 ~ 28454020 (+)
LOC111193755 NA coding upstream 487662 28351983 ~ 28361479 (+)
nxph4 nxph4 coding downstream 129423 28994206 ~ 29085444 (+)
shmt2 shmt2,LOC103359782,LOC106515133 coding downstream 226060 29090843 ~ 29132063 (+)
h6pd h6pd coding downstream 380498 29245281 ~ 29259083 (+)
rbp7 rbp7,LOC107713528,LOC107666991,LOC107555975,LOC107708738 coding downstream 402923 29267706 ~ 29271449 (+)
c13h3orf67 NA coding downstream 694948 29559731 ~ 29609556 (+)
G114318 NA non-coding upstream 21217 28824715 ~ 28827924 (+)
LOC111193757 NA non-coding upstream 93620 28736865 ~ 28755521 (+)
LOC111193758 NA non-coding upstream 112283 28734390 ~ 28736858 (+)
G114191 NA non-coding upstream 393802 28405209 ~ 28455339 (+)
G114162 LOC108431801 non-coding upstream 532744 28312640 ~ 28316397 (+)
G114390 NA non-coding downstream 7824 28872607 ~ 28872896 (+)
G114392 NA non-coding downstream 12466 28877249 ~ 28880855 (+)
G114399 NA non-coding downstream 61632 28926415 ~ 28926817 (+)
G114400 NA non-coding downstream 66567 28931350 ~ 28931596 (+)
G114402 NA non-coding downstream 67141 28931924 ~ 28985639 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other upstream 1359619 27391014 ~ 27489522 (+)
G113979 snrpb,LOC101173217 other upstream 1496697 27347449 ~ 27352444 (+)
ube2o ube2o other upstream 3452158 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 3586920 25261386 ~ 25262221 (+)
LOC103030782 NA other upstream 3595011 25250384 ~ 25254130 (+)
LOC103044650 LOC108427558 other downstream 342960 29207743 ~ 29281311 (+)
LOC111193669 NA other downstream 1017588 29882371 ~ 29887978 (+)
G114698 NA other downstream 1261552 30126335 ~ 30129896 (+)
G114841 NA other downstream 1985526 30850309 ~ 30880553 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 3028502 31893285 ~ 31894351 (+)

Expression


Co-expression Network