c13h3orf67


Basic Information

Item Value
gene id c13h3orf67
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 29559731 ~ 29609556 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675647.1
TTGTTATTCAGGCTGAGGAAGCATTGAAAACATTGGAATCATGTTCAGGAACGAATATCAGgGTGGTGCCATTGTGGAGATCTTTAGTGCACAAGGAAAAGATCCTGTGGCAAAATGGAAAGTTAGTGGTGGCCTTTCATCCATCAGTAAAGTACTTGATAAAGAAGTCAAAGGGTTTGTGTACAGCCTTGAGGGCAGCAGTCAGACACACAGGATGCAGTTACCTAAGGACGGCAAGATGCCTCTTGTCCTGATTCAGAGGTACTTGGTCCTACAGGTGAACGTTCCTCTTGGTAAAGACTTCTCCACGGAGCTTGTCGTAACAGATCAAGGGCACCTGAAGCGGAGGCTCTACTTCTCCACTGTACATAAGGAGTTCTCAGCTACCCCTCTGCATGCCAGAGTACCTCTCACCGGCCTCAGGCGGAACACTTGGTGTAACCTGTGTATTGACCTGGGCTCATTCACTGCTGAGCTGTTCCGAGGAGCTGCGTTCCTGTCTCTGGATGGCATCATTATCTCAGCCTGCTGTAAGGTCAAGCGCATCTTCACCCTGAGGGCTGAACCTGCAGATCATGTGGACAGAGATCTTTATGATATGAGGAATGGGCCGAAAGAAGAGATTCCCAGGAGCTGCCAGTTCCCCCATGATGTTCAGCATGTTACACAGCTTGTAAATATGGAGAGTCTGCGACAGCTTGAAGTGAGGAATGTGCCTTTCAACACAGAGTCTGAGCAAGCAGGCACTGGCAGATTGGCACACGCTCTGGGTCCTAAAACCCAGGACAGTTCCCACATCGCGTTTGGTTCAAAGGTCACTGGTCGTCCTCCACTCACAGCAAGGAGGAGCAGTTCTTCAGCGAATGGGGCACAGTCGAGAGCGAGGACTGACCCAGGCACTAGTATACTGACAGGCAGAAGTGGAAATTTACAGCCACGACCACCAACTGAAAGGGCGTCCTCTGAGAGAACAAGGTCTAGAAGGTCACCACAGATTTATAGTGCTGGAAGAGAGAGTTCAGTGACACgAAATAATGCAGGTGTACCTTATCCAAGCCAAGAGATAGAAGAGTCATCTCAAAGGGTTTTTCAGCAACTGGTACAACCTGTGATAGAGCAGGATCCATCAGTAGATCGCTGTACACCAGACCAGGCCTGGAGTTCAGAGACTCCTGGGCCAAATCCCCGGCCTCTGCGGTGCCAGTCTCCATCTGCTCCACTTCCCCGTCTCTGTGTGCTGCAGAACGGCATTAATGAAGCCAGTGACACTGAACCCCAGCTCGCTGTAGGTGAAACTGAAGATCaggacgaagaggagctctTCACTTTTTCCTCCCAGCCTCACTCAGCCAAGAGGGGTCAGCATTTCTGCGACCCTTTTCTGGATCTGACCTCTGACTTTAAAGGTGAGAGCCTGCAGGGTGAAGGAGAGCGGAAGGAGGCCCGTCTGGAGGATGACTTCATTGGGAGCGAAGATGaagagATGCCGAACTGCTGGAGATCTGGAGCTGTAGAATCCACAGTTGGATGCCTGAGACATGTACTAtatgAAAGATACTCTCCAATCCAGAGATTTGCAGCACTCTCCAGTCCAGCTCCAACCACTCCACCCTGTGCTGCTCTCCAGAAATCCACCTCCTTATCCAGGCTCTTTACTGAGGCAGTGCAGGTCCAGGCCTCCGGTGCTGCACCTGTGTGTGTAGCTCCAACGCGCTGTCTCTCACCCAGCACCCCCAGACAGAGGAGCAGACTAGAGTGGTCTGGAGCAGAGCGCAGCAAACCTGATGGAGAAACGAGGACATCCATTAGTAGAACATCTGTTCGAGAGATTCCCCTTGGGGACCTGAGACTTCACAAGgtgagagagagcgagaggagtGTGCCTGTGGGCTCCAGCAGATGTGATTTGCACAAGAGAGCGGAGCAagaagaggatgaggaagaagagCTGCGAATGTTGGCCAGTCTTAGAagagagcagcaggaggaggcgGATGGCACAAGCAGCCCTGGCCTCAGCGCCTCACAAGTTGACCAGTGCAATGTCAGTCTGAGTATGAGCAGCGATGACACCTCTACATGGACCCAGTGTATTCGTCTAGCAGCCGAACAGGGCCAGGACTACCAGAAAGAGATGAACCCTCTCCTGCACTCTAATCCCAGgGAATGGATGGACGTCCTCAGCCCTCCAATAGTTTATCCATCACAGAGCAAAGAAGACAACAAAAAAGGGTCTGAGGCACGGGAGAACGGCAGGGAGGACGAGTTTCTCAGCCTGCTCTATGATCCCTGTCTCAACTGCTACTTTGATCCTCAGACTGGGAAGTACTATGAGCTGATTTAAGATCAGTGAAATCAACGGGGCTGCTTCACAGAGCctgacacacacagaaagaaagaaagtcacTTGTTTTAGATGTACTGTGGCAGTGGACATAAAAGGCACCCTTGTTTCAAATGATTCCAACTGTTCCAGCTTTCTTCAAGCATTCGCCTGTTTCTGTAAAAATAAGAAGATTTGTAGAAATTTTGTATTAAAGTATTAAGACATTTAtagaatgtattattatatagtgCATTAATTTCatcaaattaatataaaataaacaatactacCCCA
>XM_022675648.1
TTGTTATTCAGGCTGAGGAAGCATTGAAAACATTGGAATCATGTTCAGGAACGAATATCAGgGTGGTGCCATTGTGGAGATCTTTAGTGCACAAGGAAAAGATCCTGTGGCAAAATGGAAAGTTAGTGGTGGCCTTTCATCCATCAGTAAAGTACTTGATAAAGAAGTCAAAGGGTTTGTGTACAGCCTTGAGGGCAGCAGTCAGACACACAGGATGCAGTTACCTAAGGACGGCAAGATGCCTCTTGTCCTGATTCAGAGGTACTTGGTCCTACAGGTGAACGTTCCTCTTGGTAAAGACTTCTCCACGGAGCTTGTCGTAACAGATCAAGGGCACCTGAAGCGGAGGCTCTACTTCTCCACTGTACATAAGGAGTTCTCAGCTACCCCTCTGCATGCCAGAGTACCTCTCACCGGCCTCAGGCGGAACACTTGGTGTAACCTGTGTATTGACCTGGGCTCATTCACTGCTGAGCTGTTCCGAGGAGCTGCGTTCCTGTCTCTGGATGGCATCATTATCTCAGCCTGCTGTAAGGTCAAGCGCATCTTCACCCTGAGGGCTGAACCTGCAGATCATGTGGACAGAGATCTTTATGATATGAGGAATGGGCCGAAAGAAGAGATTCCCAGGAGCTGCCAGTTCCCCCATGATGTTCAGCATGTTACACAGCTTGTAAATATGGAGAGTCTGCGACAGCTTGAAGTGAGGAATGTGCCTTTCAACACAGAGTCTGAGCAAGCAGGCACTGGCAGATTGGCACACGCTCTGGGTCCTAAAACCCAGGACAGTTCCCACATCGCGTTTGGTTCAAAGGTCACTGGTCGTCCTCCACTCACAGCAAGGAGGAGCAGTTCTTCAGCGAATGGGGCACAGTCGAGAGCGAGGACTGACCCAGGCACTAGTATACTGACAGGCAGAAGTGGAAATTTACAGCCACGACCACCAACTGAAAGGGCGTCCTCTGAGAGAACAAGGTCTAGAAGGTCACCACAGATTTATAGTGCTGGAAGAGAGAGTTCAGTGACACgAAATAATGCAGGTGTACCTTATCCAAGCCAAGAGATAGAAGAGTCATCTCAAAGGGTTTTTCAGCAACTGGTACAACCTGTGATAGAGCAGGATCCATCAGTAGATCGCTGTACACCAGACCAGGCCTGGAGTTCAGAGACTCCTGGGCCAAATCCCCGGCCTCTGCGGTGCCAGTCTCCATCTGCTCCACTTCCCCGTCTCTGTGTGCTGCAGAACGGCATTAATGAAGCCAGTGACACTGAACCCCAGCTCGCTGTAGGTGAAACTGAAGATCaggacgaagaggagctctTCACTTTTTCCTCCCAGCCTCACTCAGCCAAGAGGGGTCAGCATTTCTGCGACCCTTTTCTGGATCTGACCTCTGACTTTAAAGGTGAGAGCCTGCAGGGTGAAGGAGAGCGGAAGGAGGCCCGTCTGGAGGATGACTTCATTGGGAGCGAAGATGaagagtatgAAAGATACTCTCCAATCCAGAGATTTGCAGCACTCTCCAGTCCAGCTCCAACCACTCCACCCTGTGCTGCTCTCCAGAAATCCACCTCCTTATCCAGGCTCTTTACTGAGGCAGTGCAGGTCCAGGCCTCCGGTGCTGCACCTGTGTGTGTAGCTCCAACGCGCTGTCTCTCACCCAGCACCCCCAGACAGAGGAGCAGACTAGAGTGGTCTGGAGCAGAGCGCAGCAAACCTGATGGAGAAACGAGGACATCCATTAGTAGAACATCTGTTCGAGAGATTCCCCTTGGGGACCTGAGACTTCACAAGgtgagagagagcgagaggagtGTGCCTGTGGGCTCCAGCAGATGTGATTTGCACAAGAGAGCGGAGCAagaagaggatgaggaagaagagCTGCGAATGTTGGCCAGTCTTAGAagagagcagcaggaggaggcgGATGGCACAAGCAGCCCTGGCCTCAGCGCCTCACAAGTTGACCAGTGCAATGTCAGTCTGAGTATGAGCAGCGATGACACCTCTACATGGACCCAGTGTATTCGTCTAGCAGCCGAACAGGGCCAGGACTACCAGAAAGAGATGAACCCTCTCCTGCACTCTAATCCCAGgGAATGGATGGACGTCCTCAGCCCTCCAATAGTTTATCCATCACAGAGCAAAGAAGACAACAAAAAAGGGTCTGAGGCACGGGAGAACGGCAGGGAGGACGAGTTTCTCAGCCTGCTCTATGATCCCTGTCTCAACTGCTACTTTGATCCTCAGACTGGGAAGTACTATGAGCTGATTTAAGATCAGTGAAATCAACGGGGCTGCTTCACAGAGCctgacacacacagaaagaaagaaagtcacTTGTTTTAGATGTACTGTGGCAGTGGACATAAAAGGCACCCTTGTTTCAAATGATTCCAACTGTTCCAGCTTTCTTCAAGCATTCGCCTGTTTCTGTAAAAATAAGAAGATTTGTAGAAATTTTGTATTAAAGTATTAAGACATTTAtagaatgtattattatatagtgCATTAATTTCatcaaattaatataaaataaacaatactacCCCA
>XM_022675649.1
TTGTTATTCAGGCTGAGGAAGCATTGAAAACATTGGAATCATGTTCAGGAACGAATATCAGgGTGGTGCCATTGTGGAGATCTTTAGTGCACAAGGAAAAGATCCTGTGGCAAAATGGAAAGTTAGTGGTGGCCTTTCATCCATCAGTAAAGTACTTGATAAAGAAGTCAAAGGGTTTGTGTACAGCCTTGAGGGCAGCAGTCAGACACACAGGATGCAGTTACCTAAGGACGGCAAGATGCCTCTTGTCCTGATTCAGAGGTACTTGGTCCTACAGGTGAACGTTCCTCTTGGTAAAGACTTCTCCACGGAGCTTGTCGTAACAGATCAAGGGCACCTGAAGCGGAGGCTCTACTTCTCCACTGTACATAAGGAGTTCTCAGCTACCCCTCTGCATGCCAGAGTACCTCTCACCGGCCTCAGGCGGAACACTTGGTGTAACCTGTGTATTGACCTGGGCTCATTCACTGCTGAGCTGTTCCGAGGAGCTGCGTTCCTGTCTCTGGATGGCATCATTATCTCAGCCTGCTGTAAGGTCAAGCGCATCTTCACCCTGAGGGCTGAACCTGCAGATCATGTGGACAGAGATCTTTATGATATGAGGAATGGGCCGAAAGAAGAGATTCCCAGGAGCTGCCAGTTCCCCCATGATGTTCAGCATGTTACACAGCTTGTAAATATGGAGAGTCTGCGACAGCTTGAAGTGAGGAATGTGCCTTTCAACACAGAGTCTGAGCAAGCAGGCACTGGCAGATTGGCACACGCTCTGGGTCCTAAAACCCAGGACAGTTCCCACATCGCGTTTGGTTCAAAGGTCACTGGTCGTCCTCCACTCACAGCAAGGAGGAGCAGTTCTTCAGCGAATGGGGCACAGTCGAGAGCGAGGACTGACCCAGGCACTAGTATACTGACAGGCAGAAGTGGAAATTTACAGCCACGACCACCAACTGAAAGGGCGTCCTCTGAGAGAACAAGGTCTAGAAGGTCACCACAGATTTATAGTGCTGGAAGAGAGAGTTCAGTGACACgAAATAATGCAGGTGTACCTTATCCAAGCCAAGAGATAGAAGAGTCATCTCAAAGGGTTTTTCAGCAACTGGTACAACCTGTGATAGAGCAGGATCCATCAGTAGATCGCTGTACACCAGACCAGGCCTGGAGTTCAGAGACTCCTGGGCCAAATCCCCGGCCTCTGCGGTGCCAGTCTCCATCTGCTCCACTTCCCCGTCTCTGTGTGCTGCAGAACGGCATTAATGAAGCCAGTGACACTGAACCCCAGCTCGCTGTAGGTGAAACTGAAGATCaggacgaagaggagctctTCACTTTTTCCTCCCAGCCTCACTCAGCCAAGAGGGGTCAGCATTTCTGCGACCCTTTTCTGGATCTGACCTCTGACTTTAAAGGTGAGAGCCTGCAGGGTGAAGGAGAGCGGAAGGAGGCCCGTCTGGAGGATGACTTCATTGGGAGCGAAGATGaagagGTCTAACATGCaagaatgaatatatattaacatcTGAAATGAAGCTGATAAAACATGAGCTATattgggccctatcttacaccctgcacaag

Function

GO:

id name namespace
GO:0030030 cell projection organization biological_process
GO:0030031 cell projection assembly biological_process
GO:0060271 cilium assembly biological_process

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675647.1 True 2620 mRNA 0.50 18 29559731 29609556
XM_022675648.1 False 2557 mRNA 0.50 17 29559731 29609556
XM_022675649.1 False 1575 mRNA 0.50 12 29559731 29591335

Neighbor

gene id symbol gene type direction distance location
rbp7 rbp7,LOC107713528,LOC107666991,LOC107555975,LOC107708738 coding upstream 288282 29267706 ~ 29271449 (+)
h6pd h6pd coding upstream 300648 29245281 ~ 29259083 (+)
shmt2 shmt2,LOC103359782,LOC106515133 coding upstream 427668 29090843 ~ 29132063 (+)
nxph4 nxph4 coding upstream 474287 28994206 ~ 29085444 (+)
stac3 stac3 coding upstream 694948 28849141 ~ 28864783 (+)
LOC103032776 NA coding downstream 10804 29620360 ~ 29630245 (+)
LOC111193761 LOC108427564 coding downstream 21369 29630925 ~ 29638287 (+)
LOC103043238 pbrm1l,LOC108427561 coding downstream 73094 29682650 ~ 29697639 (+)
stau1 stau1 coding downstream 89044 29698600 ~ 29709786 (+)
LOC103032161 LOC108427567 coding downstream 102929 29712485 ~ 29728337 (+)
G114474 NA non-coding upstream 2040 29458027 ~ 29557691 (+)
G114475 NA non-coding upstream 84164 29474846 ~ 29475567 (+)
G114438 NA non-coding upstream 274953 29230207 ~ 29284778 (+)
G114439 tardbp,LOC108427558,LOC105025427 non-coding upstream 277317 29281458 ~ 29282414 (+)
G114433 NA non-coding upstream 299045 29183414 ~ 29260686 (+)
G114623 NA non-coding downstream 223640 29833196 ~ 29833502 (+)
G114627 NA non-coding downstream 229706 29839262 ~ 29839720 (+)
G114640 NA non-coding downstream 349042 29958598 ~ 29959049 (+)
G114643 NA non-coding downstream 360379 29969935 ~ 29970956 (+)
G114647 NA non-coding downstream 370058 29979614 ~ 29979838 (+)
LOC103044650 LOC108427558 other upstream 278420 29207743 ~ 29281311 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other upstream 2070209 27391014 ~ 27489522 (+)
G113979 snrpb,LOC101173217 other upstream 2207287 27347449 ~ 27352444 (+)
ube2o ube2o other upstream 4162748 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 4297510 25261386 ~ 25262221 (+)
LOC111193669 NA other downstream 272815 29882371 ~ 29887978 (+)
G114698 NA other downstream 516779 30126335 ~ 30129896 (+)
G114841 NA other downstream 1240753 30850309 ~ 30880553 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 2283729 31893285 ~ 31894351 (+)
LOC103031324 kcna3a,LOC108427600,LOC108271529,LOC107729772,LOC107666172,LOC107708155,LOC107554199,LOC107685799 other downstream 2343458 31953014 ~ 31962885 (+)

Expression


Co-expression Network