LOC103033959 (LOC108427594,LOC108272164)


Basic Information

Item Value
gene id LOC103033959
gene name LOC108427594,LOC108272164
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 31778077 ~ 31787521 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675680.1
ACCAGCTGTCCGTTTGTGTGGATATCACAATGGCACCTGCTGTTGGAGGACCTATTGGATACACTCCTCCCGAAGGAGGCTGGGGTTGGGCGGTGGTGGCTGGTGCCTTCATCGCTATTGGTTTCTCCTATGCCTTCCCCAAGTGCATCACTGTGTTCTACAGAGATATTGAACTAGTCTTCAATGCCAGCACAAGCCAAGTGTCCTGGATCTCCTCTATCAATGCAGCCTTCGTTTATGCTGGAGGTCCAATCAGCAGTATCCTGGTGAAAAAGTATGGCAGTCGTCCTGTGATGATACTAGGGGGCTGCCTCTCAGGAGCTGGACTTATTGGTGCCTCTTTCTGCAACTCAGTGGAGGCGTTATATTTCTATGTGGGTGTAGTAGGAGGTCTCGGACTTTCATTCAATCTCAACCCAGCTCTTATAATGATTAGCAAATACTTCTACAAGAGAAGGCCTTTTGCTAACGGAATTGCCATGGCTGGTACTCCAGTATTTCTGGCCAGTCTGGCCCCGATAAACAGCTGGTTTTATGACCAGTTTGGCTTGAGAGGCAGCTTTCTAATCCTGGGTGGGATTCTGCTCAACTGCTGTGTTGCAGGATCTCTCATGAGGCCCATTGGGCCCAAGCCCCAGCCTGCTGTGGAAGAGCCTGAAGCTTCAGCTGAGAAGAAGACTGTGGTGGAAGTTATCAATAGTTTCATTGATCTGTCTCTGTTCAAACACCGTGGATTCCTCCTCTACCTCCTGGGAAATGTTACCTTGTTCTGTGGCGTCTTCACCCCCCTCGTATTCCTCAGTAATTATGCCAAGACCAGGGATATCCCAAACGATAAGGCTGCATCTCTGCTTTCAGTGCTGGCCTTGGTGGACATGGTGGCACGGCCCTCAATGGGAACTGTGGCCAACACCAAATGGGTGCGTCCCCGGGTGCAGTATTTCTTTGCAGCTTCTGTCCTGTTTAATGGTGTGTGCCACCTGCTTGCACCTCTTGCAATGGACTTTTCAGGTTTTGTAATCTATTCAGCTTTCTATGGGTTTGGGTTCGGGTGGATGAGTTCTGTGCTTTTTGAGACGCTGATGGATCTGGTGGGAACAGAACGCTTCTCCAGTGCTGTGGGGCTGGTGACCATTTTGGAGTGTGTGCCAGTGTTACTTGGCCCACCCTTGTTggGAGCATTTAATGACATCTACCGCGACTACAAATACACTTACATAAGCTGTGGAATAATCCTATTGGTTGCAAGCTTGTTCCTCTTTGTTGGCATGGGCATCAACTACAGGCTGCTGGATAAAGAAGCAGAGGAGAAAGCTAAAAAAGCCCAGCTGAAAGGAGCGGAAGACGAATCCACCACAGAGAGTGCAGCCAAAACGACTGGCAATGAGGAGACAGTGACACAGAAAGCTGAGAGCTGAGAGCTGATTCCAAAACTGCTGGAGTACACTAAGTAATCTAGTCTATGAATGACTGGCCTGGCATGCAAGAAGAGAATTCactgaaacagaaaacagacactAGTCTTTTTATCATTATTGCACTCTCACTGCTATGAGCAGAGGATGCTCTTATACAGACAcaacatatttttgttttttgtaatggGATTTGTGCATCAGGATTGATAAATATGAGGTAGAAATAAACTAgattaaaaacaccagcatcTTCTCTGAGACAAAGCTTATTTAAAATGGACTGAGACTGAAAATGAATCAAATTTGGATACGTTTTTTTAGATGATTAAATGAGCTTTGCCTCAAAGAAGATTGTGGGGTTTCTAGATTGTATTGGCAAATGGCATCTTTTTGCATGATACAGCTTCAActttttgcatttgtatttgaaaacaaagatttttgAAGTGTTCTTGAGCCCATCCAGTAATTACAATTATAGAATCATGCCTGTTTTTTATACTTCTGcctgagggcccgaagatcaccagTATCCAAAACTGACCGTCAACCTAGCCCCTTGTATCTGAAGAATTTCTCTAGATTCTCTGAATATGTTTTCTGTGttgtattttgaataaaatatgggtctacaagatttgcaaa

Function

NR:

description
PREDICTED: monocarboxylate transporter 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675680.1 True 2063 mRNA 0.45 4 31778077 31787521

Neighbor

gene id symbol gene type direction distance location
LOC103034279 si:dkey-238f9.1,LOC107729782,LOC103034279,LOC108427543,LOC108271548,LOC107666167,LOC107567673,LOC106582736,LOC106517667 coding upstream 208221 31417153 ~ 31569856 (+)
LOC103034927 LOC108427590 coding upstream 428163 31332545 ~ 31349914 (+)
LOC103029625 LOC107708099,LOC108271793,LOC107655781,LOC107666178,LOC107549309,LOC107729733,LOC107569802 coding upstream 493238 31270025 ~ 31284839 (+)
LOC103036086 LOC103036086 coding upstream 515037 31234183 ~ 31263040 (+)
LOC103036390 LOC108427585,LOC108272160,LOC107655778,LOC107708163 coding upstream 546246 31185467 ~ 31231831 (+)
LOC103032899 slc16a1a,LOC103032899,LOC108427596,LOC108272179,LOC107666031,LOC107554177 coding downstream 10151 31797672 ~ 31810212 (+)
sycp1 NA coding downstream 29065 31816586 ~ 31825662 (+)
LOC103029304 NA coding downstream 42742 31830263 ~ 31843917 (+)
LOC103031950 LOC108427598,LOC108271946,LOC106566040,LOC105007568,LOC107554200,LOC107685798,LOC107708156 coding downstream 61346 31848867 ~ 31855053 (+)
LOC103030675 LOC103030675,LOC108427602,LOC108271528,LOC107685800,LOC100537815,LOC107554174,LOC107596796,LOC107666037,LOC107729734 coding downstream 187435 31974956 ~ 31985877 (+)
G114996 NA non-coding upstream 83423 31694445 ~ 31694654 (+)
G114994 NA non-coding upstream 98751 31678906 ~ 31679326 (+)
G114979 NA non-coding upstream 159727 31617773 ~ 31618350 (+)
G114978 NA non-coding upstream 180147 31597699 ~ 31597930 (+)
G114955 NA non-coding upstream 371514 31406296 ~ 31406563 (+)
G115027 NA non-coding downstream 129449 31916970 ~ 31917304 (+)
G115028 NA non-coding downstream 129845 31917366 ~ 31917585 (+)
G115029 NA non-coding downstream 142567 31930088 ~ 31930377 (+)
G115030 NA non-coding downstream 144237 31931758 ~ 31932132 (+)
G115093 NA non-coding downstream 368498 32156019 ~ 32167052 (+)
G114841 NA other upstream 897524 30850309 ~ 30880553 (+)
G114698 NA other upstream 1648181 30126335 ~ 30129896 (+)
LOC111193669 NA other upstream 1890099 29882371 ~ 29887978 (+)
LOC103044650 LOC108427558 other upstream 2496766 29207743 ~ 29281311 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other upstream 4288555 27391014 ~ 27489522 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 105764 31893285 ~ 31894351 (+)
LOC103031324 kcna3a,LOC108427600,LOC108271529,LOC107729772,LOC107666172,LOC107708155,LOC107554199,LOC107685799 other downstream 165493 31953014 ~ 31962885 (+)
LOC103027407 prkag1,LOC107708574,LOC107686771,LOC107752861,LOC107690822,LOC107554882,LOC107582314 other downstream 341784 32129305 ~ 32143822 (+)
LOC103025619 LOC103025619,LOC108427613,LOC108272187,LOC104930301,LOC103373509,LOC100704252,LOC104955611 other downstream 457745 32245266 ~ 32320655 (+)
G115133 NA other downstream 822928 32610449 ~ 32611203 (+)

Expression


Co-expression Network