trub2 (trub2)


Basic Information

Item Value
gene id trub2
gene name trub2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35616324 ~ 35620073 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675725.1
CACagacaaagaagaaaaagaaaaagaagaagaaggagagagcTCTCCCCTCCAATAGAGAGCAATAATGAACCTTACAGGATCTGAACTGAACAGCAGAAGGGGCTCCACGTTGTGTTAGTGATGTAACGTTAGCTCTGGCCCTGGGAGCAGTCCgttgtttttataatattaataaatgctcCTGCTGCTCTGTAGCAGTGTTTTCCCTGCCTAAATGTGTTGTATTATAAGAACAGTATAATCATTTGAAAAAGGTAATCTAATGGCGACAAAAGCTGCACGACTCCTCAGTAAACTGGATGGTCTGTTTGCTGTTTACAAACCTCCTGGAGTTCACTGGAAACTGGTCCGAGACCAGGTCGAGACTAACCTGCTGACAGCTGTAAATGCGTTTCCACCTCCTGCACCGCAGTATCAGGTTCAGTTTCAGCTTTTGTCTAGTGGAGAGACCAGCACCTCCAGTGACCTCACATTGACTGCAACAAAGCTCCCGGTTCTGGCGGACCATCCTTTGGTGACAGGACCACAGTATCATAAGATCCGTGTTGGAGTTGGTCATCGTTTGGATGCATTTTCCTCTGGAGTCCTGGttCTTGGTCTTGGGAAAGGAAACAATGCTCTGGATAGTCTGTACCGATCACATGTCACAAGAGACTATACACTTGAAGGGGAATTTGGAATGGCCACAAATGATTTCACTCACACTGGACGAGTTATTGAGAAAAGCACATACGGCCATGTTACACAGGAGAAGCTTGAGAGAGTGTTAGCCATGGTCCAGGGAGCCAATCAGAAAGCTTTAATCACgtacTCCAGGGTGGACCTGCACTCTCAGGAGGCGTATGAGCTGGCAGTGAAGGGGATGCTGCGTCCACAAGATAAAAGCCCTCCTATTATAACTGGATTACGATGTCTTAGTTTTAAACCTCCTTACTTTAAACTGGAGGTGCAGTGTGTGAATGAGACTCAGTGGTATCTGCGGAAAATGCTGCATGAGTTGGGTTTGGAACTGCGCACCACTGCAGTCTGCACCAAGGTGCGTCGCACAAGAGATGGTCCATTTAATATGGAGGACGCGCTACTCCACAACCGCTGGACTGCTGATGACATCATACCAGCTGTCAAATACTTTCGTCGCACTACTCGGAAAATCAGGAAGAATGACAGTTACAAACAAGCTGTCACCCAGCTAGATTCCACCACAGAGGCTCAGGACCAAAGCAGGACTAACTCATGTCATTTAGAGGCTCAAGAGAAGGATGGATCAAACAATATTTCTGCTGAAATGTCTGCTGACAGTAAGCAGTGGAGTTAAAGGATTAAAATGCaaggcaaaaaaatatatagataaatattttgaatttaTCAAACAACTATTTATTGCTTTACCAATCTACAAGTGAACCTGAAATAATTTGTCACCATTTAGAATGTTGTAAAATTGAATATTATGCATATGTACCATGGACTGGATCATGGAATTTTAACAAATACTGTTGAGGTTACTGTAAGATGTTCTTTTGTGTGcatactttttttcttctttttttcttttgtcatttATGTCTTTATTGTGTGAAATGTAATACAATATATGATAACAGCTTTG

Function

symbol description
trub2 Predicted to enable RNA binding activity and pseudouridine synthase activity. Predicted to act upstream of or within RNA processing and pseudouridine synthesis. Orthologous to human TRUB2 (TruB pseudouridine synthase family member 2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0001522 pseudouridine synthesis biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG:

id description
K23497 TRUB2; mitochondrial mRNA pseudouridine synthase TRUB2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675725.1 True 1612 mRNA 0.43 8 35616324 35620073

Neighbor

gene id symbol gene type direction distance location
LOC103046487 NA coding upstream 22089 35582423 ~ 35594235 (+)
LOC103021651 slc6a13,LOC108413697,LOC107567077,LOC107721195,LOC107584422,LOC108271735 coding upstream 92409 35503056 ~ 35523915 (+)
LOC103022280 LOC103022280,LOC108436247,LOC108271634 coding upstream 145119 35462800 ~ 35471205 (+)
hemk1 NA coding upstream 346953 35254096 ~ 35269371 (+)
cav3 cav3,LOC107749619,LOC107584510,LOC107750282 coding upstream 792615 34815978 ~ 34823709 (+)
hdhd3 hdhd3 coding downstream 1579 35621652 ~ 35625208 (+)
LOC103043339 LOC108440316,LOC108271728 coding downstream 28764 35648837 ~ 35661125 (+)
sfi1 NA coding downstream 67553 35687626 ~ 35709189 (+)
LOC103040678 zgc:172271,LOC108440373,LOC107721198,LOC107568196,LOC107667401 coding downstream 89207 35709280 ~ 35717863 (+)
sirt4 sirt4 coding downstream 97895 35717968 ~ 35721428 (+)
G115876 LOC108271732 non-coding upstream 66777 35535980 ~ 35549547 (+)
G115874 fkbp5,LOC108271732,LOC108413698,LOC105026479 non-coding upstream 84303 35529492 ~ 35532021 (+)
G115873 NA non-coding upstream 89814 35525409 ~ 35526510 (+)
LOC111193769 NA non-coding upstream 91235 35524334 ~ 35525089 (+)
G115861 LOC108436256,LOC107750275 non-coding upstream 132569 35480195 ~ 35483755 (+)
G115925 patz1 non-coding downstream 41370 35661443 ~ 35664877 (+)
G115915 eif4enif1 non-coding downstream 56105 35676178 ~ 35676841 (+)
G116020 NA non-coding downstream 242141 35862214 ~ 35862823 (+)
LOC111193772 NA non-coding downstream 274874 35894947 ~ 35899393 (+)
G116050 NA non-coding downstream 310851 35930924 ~ 35933206 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 56598 35553601 ~ 35559726 (+)
LOC103023619 cadps,LOC106953609 other upstream 252684 35290828 ~ 35363640 (+)
LOC111193767 NA other upstream 486251 35057150 ~ 35130073 (+)
G115736 NA other upstream 607382 34920701 ~ 35008942 (+)
LOC103038162 NA other upstream 1224365 34380297 ~ 34391959 (+)
G115917 NA other downstream 22801 35642874 ~ 35676035 (+)
G115931 NA other downstream 110306 35730379 ~ 35734359 (+)
tomm6 NA other downstream 338470 35958543 ~ 35967878 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other downstream 362046 35982119 ~ 35988060 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 722912 36342985 ~ 36359777 (+)

Expression


Co-expression Network