LOC111193774 (col7a1)


Basic Information

Item Value
gene id LOC111193774
gene name col7a1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36205672 ~ 36218972 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675757.1
AGGGTGAAGTGACTGTTGGAGTACCTGgccagagaggagagagaggagatccAGGACCTCGGGGAGAAGAAGGGCGGCCTGGACAAGATGGGGAGAGAGGCTCTCCGGGTTTCCCAGGTAGCAAAGGGGGCAGAGGGGACAAGGGTGAGGCGGGTCCTCCAGGAGGCAAAGGAGAGAAGGGTGAAACTCTGCTGGTGGGTGGGCCGGCCGGGGAGAAGGGAAATAAAGGCGAAACGGGAGAGCGTGGGCCCAAAGGAATGCAAGGGGGAAAAGGGCAGTAAAGGACAGGAGGGACCACCAGGGGTGCAGGGTCTGAGAGGAGAGCCTGGGGAGCGAGGCTCTACTGGGTTCCAAGGTGCTCGTGGTCCAGGAGGACAGAAGGGTGAGGGAGGACAGCCAGGAGTTCCAGGAGAagctGGAACTGCTGGAAAAGATGGCCTTCCTGGTTTGAGAGGAGAGAAGGGGGAGATTGGTCTTATGGGTATGCGTGGGATTAAGGGAGAACGAGGGTCCAAAGGGGCGTGTGGAGCAAATGGACAAAAAGGAGAAAGGGGGGATCCTGGAATTAATGGCAGACCAGGTTTGCCTGGAAGGAAAGGAGAGTCGgGTGATGTGGGACCTCCAGGAGCCACAGGAACCCCAGGAAAAGAAGGAATTGTTGGACCCAAAGGTGACAGGGGCTTTGATGGTGTGATGGGACCAAAGGGAACACAAGGAGACAAAGGTGAACGGGGACCCCCTGGCATCCCTGGCCCCCCAGGTCCCCGAGGTGCAGACGGTCCCTCTGGTCTTACAGGCCCTCAGGGGCCAGCTGGAACTAAAGGCCCAGAGGGACTGCAGGGACAGAAGGGTGAACGTGGTCCTCCAGGTCCAGCGATGGTTGGCCCTCGAGGTATTCCAGGAATTCCTGGAGAACGAGGAGAACAGGGTGAAGTAGGTCTTGATGGATctaaaggagagagaggagagccaGGCTTGACGGAGGATGAGATCCGTGCTTATGTTCGGTCAGAGATGAACCAGCACTGTGCCTGTGGAGGTGTTGGAGAAATTCAGCCACGTTCGCCGCTGCAGACTTTCCGAAGTCACTCCTCCATGTCCCCCGAGCTCTCAGTAGGCCGAGGGGATGAGGAGGGTCGTGAATTGCGTGTTGTGGTGAATACAAACGATCCAGACTATGAGCATATTTACTCTATTGAAAGCTATGATGACCCCATGGAAGAAATTGTTGATCTTACCCCCCCAGTCAACCAGAGCCAAGGCAAGACAACCAAGGTTGTTGCATTAAATGCAGTGAAACAGAAAAGAGAGGTTAAAGGTGAAGATCCGTGTGCACTGCCACTGGATGAGGGTGACTGTTCCAGATATACGCTGCACTGGTACTTTAATTCTCAGGTGGGCGCCTGTAGACCCTTTGTCTACAGTGGCTGTGGAGGAAATGCCAACCGCTACACACAGAAAGAGGAGTGTGAAAAACACTGCCTATGACAGAGAGCGTCTGTACCTTCAAAAAGTGGACAATAATTATGGGATTTCAGACTCCAAAACCAGTGCAAAATCCGTGTTCAATGTTTTAATCATATTCATCTGATGCTTCTGGGCTTCATAAATCTGCGACTGGACttcatcata
>XM_022675758.1
AGGGTGAAGTGACTGTTGGAGTACCTGgccagagaggagagagaggagatccAGGACCTCGGGGAGAAGAAGGGCGGCCTGGACAAGATGGGGAGAGAGGCTCTCCGGGTTTCCCAGGTAGCAAAGGGGGCAGAGGGGACAAGGGTGAGGCGGGTCCTCCAGGAGGCAAAGGAGAGAAGGGTGAAACTCTGCTGGTGGGTGGGCCGGCCGGGGAGAAGGGAAATAAAGGCGAAACGGGAGAGCGTGGGCCCAAAGGAATGCAAGGGGGAAAAGGGCAGTAAAGGACAGGAGGGACCACCAGGGGTGCAGGGTCTGAGAGGAGAGCCTGGGGAGCGAGGCTCTACTGGGTTCCAAGGTGCTCGTGGTCCAGGAGGACAGAAGGGTGAGGGAGGACAGCCAGGAGTTCCAGGAGAagctGGAACTGCTGGAAAAGATGGCCTTCCTGGTTTGAGAGGAGAGAAGGGGGAGATTGGTCTTATGGGTATGCGTGGGATTAAGGGAGAACGAGGGTCCAAAGGGGCGTGTGGAGCAAATGGACAAAAAGGAGAAAGGGGGGATCCTGGAATTAATGGCAGACCAGGTTTGCCTGGAAGGAAAGGAGAGTCGgGTGATGTGGGACCTCCAGGAGCCACAGGAACCCCAGGAAAAGAAGGAATTGTTGGACCCAAAGGTGACAGGGGCTTTGATGGTGTGATGGGACCAAAGGGAACACAAGGAGACAAAGGTGAACGGGGACCCCCTGGCATCCCTGGCCCCCCAGGTCCCCGAGGTGCAGACGGTCCCTCTGGTCTTACAGGCCCTCAGGGGCCAGCTGGAACTAAAGGCCCAGAGGGACTGCAGGGACAGAAGGGTGAACGTGGTCCTCCAGGTCCAGCGATGGTTGGCCCTCGAGGTATTCCAGGAATTCCTGGAGAACGAGGAGAACAGGGTGAAGTAGGTCTTGATGGATctaaaggagagagaggagagccaGGCTTGACGGAGGATGAGATCCGTGCTTATGTTCGGTCAGAGATGAACCAGCACTGTGCCTGTGGAGGTGTTGGAGAAATTCAGCCACGTTCGCCGCTGCAGACTTTCCGAAGTCACTCCTCCATGTCCCCCGAGCTCTCAGTAGGCCGAGGGGATGAGGAGGGTCGTGAATTGCGTGTTGTGGTGAATACAAACGATCCAGACTATGAGCATATTTACTCTATTGAAAGCTATGATGACCCCATGGAAGAAATTGTTGATCTTACCCCCCCAGTCAACCAGAGCCAAGATCCGTGTGCACTGCCACTGGATGAGGGTGACTGTTCCAGATATACGCTGCACTGGTACTTTAATTCTCAGGTGGGCGCCTGTAGACCCTTTGTCTACAGTGGCTGTGGAGGAAATGCCAACCGCTACACACAGAAAGAGGAGTGTGAAAAACACTGCCTATGACAGAGAGCGTCTGTACCTTCAAAAAGTGGACAATAATTATGGGATTTCAGACTCCAAAACCAGTGCAAAATCCGTGTTCAATGTTTTAATCATATTCATCTGATGCTTCTGGGCTTCATAAATCTGCGACTGGACttcatcata

Function

symbol description
col7a1 Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in hypodermis. Human ortholog(s) of this gene implicated in epidermolysis bullosa dystrophica (multiple) and nonsyndromic congenital nail disorder 8. Orthologous to human COL7A1 (collagen type VII alpha 1 chain).

NR:

description
PREDICTED: collagen alpha-1(VII) chain isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675757.1 True 1632 mRNA 0.54 23 36205672 36218972
XM_022675758.1 False 1569 mRNA 0.55 22 36205672 36218972

Neighbor

gene id symbol gene type direction distance location
col7a1 col7a1 coding upstream 10248 36129984 ~ 36195424 (+)
LOC103028900 LOC108439894 coding upstream 130126 36066977 ~ 36075546 (+)
ccdc174 NA coding upstream 139380 36061465 ~ 36066292 (+)
tatdn2 NA coding upstream 149316 36050510 ~ 36056356 (+)
LOC103026553 vhl coding upstream 155270 36047897 ~ 36050402 (+)
LOC103025322 LOC108439925,LOC100332423,LOC107748417,LOC107582687,LOC107667408,LOC107585110 coding downstream 12964 36231936 ~ 36243389 (+)
trnaf-gaa_2 NA coding downstream 29801 36248773 ~ 36248845 (+)
LOC103024783 ip6k2b,LOC103024783,LOC108440711,LOC107585112,LOC107673575,LOC107711042,LOC108272042,LOC107748392 coding downstream 68085 36287057 ~ 36291813 (+)
LOC103023094 sec61a1,LOC103023094,LOC102228108,LOC108440718,LOC107384934,LOC106518493 coding downstream 95295 36314267 ~ 36320030 (+)
uroc1 uroc1 coding downstream 102871 36321843 ~ 36330036 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding upstream 205616 35990033 ~ 36000056 (+)
G116050 NA non-coding upstream 272466 35930924 ~ 35933206 (+)
LOC111193772 NA non-coding upstream 306279 35894947 ~ 35899393 (+)
G116020 NA non-coding upstream 342849 35862214 ~ 35862823 (+)
G115915 eif4enif1 non-coding upstream 528831 35676178 ~ 35676841 (+)
G116155 NA non-coding downstream 87378 36306350 ~ 36306762 (+)
G116255 NA non-coding downstream 197836 36416808 ~ 36462597 (+)
LOC111193778 NA non-coding downstream 282261 36501233 ~ 36503562 (+)
G116349 LOC108440912,LOC108439999 non-coding downstream 513176 36732148 ~ 36742014 (+)
G116359 NA non-coding downstream 604492 36823464 ~ 36831576 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 217612 35982119 ~ 35988060 (+)
tomm6 NA other upstream 237794 35958543 ~ 35967878 (+)
G115931 NA other upstream 471313 35730379 ~ 35734359 (+)
G115917 NA other upstream 529637 35642874 ~ 35676035 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 645946 35553601 ~ 35559726 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 124013 36342985 ~ 36359777 (+)
LOC103044253 LOC108440873 other downstream 438420 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 881042 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 1305879 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 2171305 38390277 ~ 38394530 (+)

Expression


Co-expression Network