efcab12


Basic Information

Item Value
gene id efcab12
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36330318 ~ 36335490 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675760.1
AATCCTAGGATGAGAGAtggacatgtttaaaaatagctaaacaaaaaatagctgtacagtttttaaacaaaaactgtATTGGTTAACTGTAACCACTATATTAatgtagtttaatgtgtagtttcaatgctACCTAAAATGGTGGTTGTATCATTGAAGGTGgaacgtaaaaataaaatacaataagagttaataaaagctaatttcagctccccatcacagaggaatttaGTACTGGACAATAATAATTGATTGCTAAACCACCTGCCCCCTTTATGAAGACATATAGTTAACTCTGTTCCAAGCGGAAAGGTTACATTCTAAAACAAGGGTGCAAaatagaaatgggattgggcctaagtgATTGTTGGCCACTCTGTGGTTACTAATTTTTCCTCAAATTGGGATATAAAACGAACACCGACGAGGTTCAGTCATACCTATTTTTAGTGtatatctttctctttcctcaGGCGGAAGGGTGCAGAGAGAGGCTGCTGtcgatattttattttaaagctgtttaaagACACGATGAACCAGTTtccccattcactcccattcaaaCTGAGCGGAATGTTTACCCCAAGACCCATGCCGGTGGAGGTGGTGCACCGCGCGCGGGGTAAAGCCCCTCCAGGTCCAGGTGAGAGGTGTGAATCAGGCCGCGGGCTGGAGCTGCAGAGCTACACCGGGCCGGGGGGCGCGGAGCTGGGGGACTGGATCAAACAGAGGAGGGCGCTGCGCTGGAGCCTGGATCACCTGGGCGACCTGGACGGGTGGCTGCAGAGAAAGCCCACCCTCACCGACCTGGAATACCTGGTCCTGGACCGCCAGAAGACATCCAGAGTCACCCAAGCTCCAGCTCAGCTGCTCCCTGACAGGACCAggAGAGGTATGCAAAGTGAAGAGGCCAGCCAGCAAACAGACAATATGATTAGTGAGACACACCTACACCCATCCACTCTGACAGGTCCTACAGGCAGGGCGGTGGAGAACTTCAGAAAACAGAGTCTAGGAGAATATCTTCAGTCTTTGGAGCAGTGCCAACAGCACAATCTGCCAATTAGCCAACCCACACTAAAGAGAGGTTATCTGCATCCTGGAGACATAAACATGTACAGCATGTTAAAACAGATGGGTTCAAGCTCTCTTCTGGGATGTAGGGGGCATGCTAGAGGATGCCACAACGCTCAACAAGATGGGAAAAAAGAAGGGATTGATGAGAAGAAATCAACTTCACCAAAAGTTCACAAAATGATgaGCAGGAGACAACCTTTAAGCCGGTGGGCAGACCCCAATGCATTCTGGCCAAGCCACGATAGCCATGTGCGGTTATGTCTTCCTGTGAAGTCTAACCGCCCTGAGAATGTCCTGTTTCAACTTATTGAACACACCCCCCCTTCATGCCCTGGACACTGGCCAGTCAATCAAGCAGGATACTTTACCTCTGGAGATATCACCAAAAACAAGTCCTACATTTTGTAGAGTCtttactactctactacttaccAGAATCATTGTTTCAGTTAATGTCAAAACCCACCCAACTATAATATTTAGAGTGTACTAAAAACCTAAATGATCTGGACTGGCCGTATTTTGTTAGTTTTGGGCCCAAATCTATTAGGTAGTTCTCCAGGAGCACAACTGACCAGATTATCACTAGTTTATACCTATTATTATAGAATTTGATTAAAATGCTATTCAGAAGAAGGATAAAAGTCACCAGGaacaacaaattattaaaatgtttgctAATGCAACTTGCCCTTGCTTatttggagttgtagaggttccacTGGATAACCACTAGATGGTGGTGTTACAGTGCACAATACACAAAGAACAATCCTAAACTACTGTATCATGGACAGAATTTAACAGGTACAACAGCTGAATTTTGATACAGATGAAACCGAACACTGTTTTTTATACAGATGTGTTCTTACAAAAATAAAGCACAAGGTCTTATAAAA
>XM_022675761.1
TAAGGGGCACTAATCCTAGGATGAGAGAtggacatgtttaaaaatagctaaacaaaaaatagctgtacagtttttaaacaaaaactgtATTGGTTAACTGTAACCACTATATTAatgtagtttaatgtgtagtttcaatgctACCTAAAATGGTGGTTGTATCATTGAAGGTGgaacgtaaaaataaaatacaataagagttaataaaagctaatttcagctccccatcacagaggaatttaGTACTGGACAATAATAATTGATTGCTAAACCACCTGCCCCCTTTATGAAGACATATAGTTAACTCTGTTCCAAGCGGAAAGGTTACATTCTAAAACAAGGGTGCAAaatagaaatgggattgggcctaagtgATTGTTGGCCACTCTGTGGTTACTAATTTTTCCTCAAATTGGGATATAAAACGAACACCGACGAGGTTCAGTCATACCTATTTTTAGTGtatatctttctctttcctcaGGCGGAAGGGTGCAGAGAGAGGCTGCTGtcgatattttattttaaagctgtttaaagACACGATGAACCAGTTtccccattcactcccattcaaaCTGAGCGGAATGTTTACCCCAAGACCCATGCCGGTGGAGGTGGTGCACCGCGCGCGGGGTAAAGCCCCTCCAGGTCCAGGTGAGAGGTGTGAATCAGGCCGCGGGCTGGAGCTGCAGAGCTACACCGGGCCGGGGGGCGCGGAGCTGGGGGACTGGATCAAACAGAGGAGGGCGCTGCGCTGGAGCCTGGATCACCTGGGCGACCTGGACGGGTGGCTGCAGAGAAAGCCCACCCTCACCGACCTGGAATACCTGGTCCTGGACCGCCAGAAGACATCCAGAGTCACCCAAGCTCCAGCTCAGCTGCTCCCTGACAGGACCAggAGAGGTATGCAAAGTGAAGAGGCCAGCCAGCAAACAGACAATATGATTAGTGAGACACACCTACACCCATCCACTCTGACAGGTCCTACAGGCAGGGCGGTGGAGAACTTCAGAAAACAGAGTCTAGGAGAATATCTTCAGTCTTTGGAGCAGTGCCAACAGCACAATCTGCCAATTAGCCAACCCACACTAAAGAGAGgaGCAGGAGACAACCTTTAAGCCGGTGGGCAGACCCCAATGCATTCTGGCCAAGCCACGATAGCCATGTGCGGTTATGTCTTCCTGTGAAGTCTAACCGCCCTGAGAATGTCCTGTTTCAA

Function

GO: NA

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675760.1 True 1979 mRNA 0.44 5 36330329 36335490
XM_022675761.1 False 1222 mRNA 0.48 4 36330318 36334894

Neighbor

gene id symbol gene type direction distance location
uroc1 uroc1 coding upstream 282 36321843 ~ 36330036 (+)
LOC103023094 sec61a1,LOC103023094,LOC102228108,LOC108440718,LOC107384934,LOC106518493 coding upstream 10288 36314267 ~ 36320030 (+)
LOC103024783 ip6k2b,LOC103024783,LOC108440711,LOC107585112,LOC107673575,LOC107711042,LOC108272042,LOC107748392 coding upstream 38505 36287057 ~ 36291813 (+)
trnaf-gaa_2 NA coding upstream 81473 36248773 ~ 36248845 (+)
LOC103025322 LOC108439925,LOC100332423,LOC107748417,LOC107582687,LOC107667408,LOC107585110 coding upstream 86929 36231936 ~ 36243389 (+)
LOC103023734 NA coding downstream 79 36335569 ~ 36340026 (+)
sumf1 sumf1,LOC107673603 coding downstream 92980 36428470 ~ 36433844 (+)
tsfm tsfm coding downstream 110901 36446391 ~ 36449832 (+)
LOC103021650 myl6,myl6b,LOC103021650,LOC108440770,LOC108271738,LOC107390870,LOC105013534,LOC107570608,LOC106950810 coding downstream 115508 36450998 ~ 36458089 (+)
LOC103047611 LOC108440812,LOC108271743,LOC107711051,LOC107585122,LOC107673583,LOC107582696 coding downstream 224321 36559811 ~ 36576516 (+)
G116155 NA non-coding upstream 23556 36306350 ~ 36306762 (+)
G116138 NA non-coding upstream 106740 36189774 ~ 36223578 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding upstream 330262 35990033 ~ 36000056 (+)
G116050 NA non-coding upstream 397112 35930924 ~ 35933206 (+)
LOC111193772 NA non-coding upstream 430925 35894947 ~ 35899393 (+)
G116255 NA non-coding downstream 81318 36416808 ~ 36462597 (+)
LOC111193778 NA non-coding downstream 165743 36501233 ~ 36503562 (+)
G116349 LOC108440912,LOC108439999 non-coding downstream 396658 36732148 ~ 36742014 (+)
G116359 NA non-coding downstream 487974 36823464 ~ 36831576 (+)
G116356 LOC103042096,LOC108440962 non-coding downstream 489804 36825294 ~ 36827868 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 342258 35982119 ~ 35988060 (+)
tomm6 NA other upstream 362440 35958543 ~ 35967878 (+)
G115931 NA other upstream 595959 35730379 ~ 35734359 (+)
G115917 NA other upstream 654283 35642874 ~ 35676035 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 770592 35553601 ~ 35559726 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 7495 36342985 ~ 36359777 (+)
LOC103044253 LOC108440873 other downstream 321902 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 764524 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 1189361 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 2054787 38390277 ~ 38394530 (+)

Expression


Co-expression Network