LOC103023734


Basic Information

Item Value
gene id LOC103023734
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36335569 ~ 36340026 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675762.1
GGTGCTCAATGATTTGCATTTGTAAGcacaacactgtgtgtgtgtgttggtgggtgggtttactgtatttatataatctGAGGTTAGACCTGGGCTCAAATGTGAATGTAATATAGAGAAAGAGCGGTTATTATAGGAGTGCAGTAAGATGTCACGGATTTTTAGCTCACTTTTGTCTACTCGAGAGAATGGTCTCCTCTTCAATATGCTGGGCCAGGACTGCAGTgtgtcTGCTTGTTCAGTGGTGCAGCTGTTTATGGCGACTGCGGCTTGTAAAGGTCAAAAGTCAGAATGGAAATATCACAGTTGTGGAGTTGTGTGTTTGGTGCAGGACAGAAAATTACATTCATCCTTTATACGAGTCTTCTGTGTCAagAAAGCGAAGCTGCTTTGGGAGCAAGAGCTCTACACTCCGTTCCAGTATTCAGCACCTTGCCCCTTTTTCCACACTTTCCCTGGAGATGAATGCCAGACTGGACTGAACTTTACTGATGAAGAGGAAGCTGGCCTTTTCTACAGTGCTGTACAAAACTGCATCAAGAATACTAAAGCACACCCTGTGTTCATGCGCACTCACAGTCTGGATTCTACCTCTGGCTGGCTGCTAAGAGACAAGCTCAACACATGTGCGGCTGAATCTGGACAAGGCAGTCGCTCCTCATCCCCCAAAACTCCGACCAGTCCTGATTTTAAGGCAAGCACTCCAACAAAGACACCAGAATCCAAATCATTTTCTGTGTCAACTAACCAGTTGTCCAATTATTCGAAGACTCTCCCCAATCTTAAATCTGCATCTGGTTCTCTGGCCCAGAGAAAGGGACCCCTGCCCCCAATCCCTTCTAATGCAACCTCAGCCTCAACAAGCAACCTGGACAAGCTTAATCTGAGTAGCTTTTCCATTCCACTCCCCCCATCTTATCCAGCCcccaaaataaatcaaacaggAGTAAAGAAAAGTGCCAGCTTTGCTCCAgGAGGAACTTATTCCCCATCTGCCCTGAAGCACCACAAAAGCTTGCATTTTACAGATGACATGCAAGCAGACACTTACTTCGAGGATGATGAGTAAACACACCTGAAATCCTGTAAATACAACACAGCTATTGCAGTTTAATACCTGTTAACATGctctatatatactgtatgtactatCCTCTCCTTCTCATCATTTCATTCATGATCTCTGATGTCACTCCAGCTATATTCTGATTCAGTGTTTAGACCGTTAAGAAAGACTGCACATTTAATTAAACCCTGTATCTATGTGTGTGAATCAGTTTGATTTACTCTTTTATTGCAACATTTAAGACTGCAGTGAAAATAAACAACTTCCGGAGATTACA

Function

GO: NA

KEGG:

id description
K23612 WASL; neural Wiskott-Aldrich syndrome protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675762.1 True 1343 mRNA 0.43 8 36335569 36340026

Neighbor

gene id symbol gene type direction distance location
efcab12 NA coding upstream 79 36330318 ~ 36335490 (+)
uroc1 uroc1 coding upstream 5533 36321843 ~ 36330036 (+)
LOC103023094 sec61a1,LOC103023094,LOC102228108,LOC108440718,LOC107384934,LOC106518493 coding upstream 15539 36314267 ~ 36320030 (+)
LOC103024783 ip6k2b,LOC103024783,LOC108440711,LOC107585112,LOC107673575,LOC107711042,LOC108272042,LOC107748392 coding upstream 43756 36287057 ~ 36291813 (+)
trnaf-gaa_2 NA coding upstream 86724 36248773 ~ 36248845 (+)
sumf1 sumf1,LOC107673603 coding downstream 88444 36428470 ~ 36433844 (+)
tsfm tsfm coding downstream 106365 36446391 ~ 36449832 (+)
LOC103021650 myl6,myl6b,LOC103021650,LOC108440770,LOC108271738,LOC107390870,LOC105013534,LOC107570608,LOC106950810 coding downstream 110972 36450998 ~ 36458089 (+)
LOC103047611 LOC108440812,LOC108271743,LOC107711051,LOC107585122,LOC107673583,LOC107582696 coding downstream 219785 36559811 ~ 36576516 (+)
LOC103047301 NA coding downstream 236592 36576618 ~ 36596744 (+)
G116155 NA non-coding upstream 28807 36306350 ~ 36306762 (+)
G116138 NA non-coding upstream 111991 36189774 ~ 36223578 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding upstream 335513 35990033 ~ 36000056 (+)
G116050 NA non-coding upstream 402363 35930924 ~ 35933206 (+)
LOC111193772 NA non-coding upstream 436176 35894947 ~ 35899393 (+)
G116255 NA non-coding downstream 76782 36416808 ~ 36462597 (+)
LOC111193778 NA non-coding downstream 161207 36501233 ~ 36503562 (+)
G116349 LOC108440912,LOC108439999 non-coding downstream 392122 36732148 ~ 36742014 (+)
G116359 NA non-coding downstream 483438 36823464 ~ 36831576 (+)
G116356 LOC103042096,LOC108440962 non-coding downstream 485268 36825294 ~ 36827868 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 347509 35982119 ~ 35988060 (+)
tomm6 NA other upstream 367691 35958543 ~ 35967878 (+)
G115931 NA other upstream 601210 35730379 ~ 35734359 (+)
G115917 NA other upstream 659534 35642874 ~ 35676035 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 775843 35553601 ~ 35559726 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 2959 36342985 ~ 36359777 (+)
LOC103044253 LOC108440873 other downstream 317366 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 759988 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 1184825 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 2050251 38390277 ~ 38394530 (+)

Expression


Co-expression Network