LOC103029516


Basic Information

Item Value
gene id LOC103029516
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36729963 ~ 36733391 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675779.1
CCCTTCCTTCGCCCCGAACTGAACCTCTGCGTGCGCGTTAGCTGCGGTCAAGATGTCGATTTTATTGCAGATTAGTGTTTTGGTGGTAAAAATCCTCACCCTGCCGCTGCTGGTGGTGGACCAGCTGGGTTTCGGCCGGTTTTACAAGCGCGTGTTTCCCGCGATAATGTACAAGCTTAGCTTCTCCTACAACAGCAAGATGGACGAGAAGAAGCGCGAGCTGTTCCGCGAGCTGCAGCGCTTCTCCCCGCGCGGAGGAGGGCCGCTGCGTCTGCTGGAGGTGGGCTGCGGCAGCGGGGCCAACTTCCAGCACTACCCCACCGGCACCAGGGTCACCTGCACAGACCCCAACCCCCACTTCCAGAGCTACCTGCAGAAGAGCATGGACAAGAACGACCACCTGGTGTACGAGAAGTTCGTGGTGGCTTCTGGAGAGGACCTGAGGGTCGTGGAGGATAACTCTGTGGACGTGGTGGTCTGTACACTGGTCATGTGCTCGTGCCAAAACACCCCCAAGGTTATCAGGGAGGCAAAGAGAGTCTTGAGACCGGGTGGAGCATTCTTCTTTTTAGAGCATGTGTCAGCAGACCCCTCGACCTGGACATACTTCCTTCAGCATGTTTTCCAGCCCTTGATGTACTATTTTTTGGATGGTTGTGATCCCACACGTGCTACATGGAAGCACCTGGAGGCAGCTGGTTTCTCTGACTTGCAGTTTTGCCACTTCAGAGCACCCTTTGCTGCTGTCGTCAGTCCACACATCGTCGGCTACGCTGTGAAATAATGTCAGCCCAGTCAGATCCATTGGACACGttggatttatatatatttttttatcccaAATATTTGGCTTTTGTAAGACCATTTATTTAGCCTCAGTGCACtta

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675779.1 True 887 mRNA 0.53 3 36729963 36733391

Neighbor

gene id symbol gene type direction distance location
LOC103029840 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC106565516 coding downstream 209855 36488583 ~ 36520108 (-)
smarcc2 smarcc2,LOC107711050,LOC107667400,LOC107748388 coding downstream 249762 36459983 ~ 36480201 (-)
LOC103022488 LOC108439971 coding downstream 287208 36433932 ~ 36442755 (-)
LOC103030168 itpr1a,LOC108440748 coding downstream 302254 36360752 ~ 36427709 (-)
LOC103029202 LOC108440675,LOC108271813,LOC107711038,LOC107673578,LOC107667363 coding downstream 615923 36082114 ~ 36114040 (-)
LOC107197751 LOC108439999,LOC108440912,LOC107580767 coding upstream 4355 36737746 ~ 36742046 (-)
LOC103042096 LOC103042096,LOC108440962 coding upstream 91894 36825285 ~ 36830441 (-)
LOC103041794 LOC108440955,LOC108272218 coding upstream 100679 36834070 ~ 36839043 (-)
LOC103041181 NA coding upstream 149419 36882810 ~ 36892252 (-)
LOC103040574 LOC108440011 coding upstream 162468 36895859 ~ 36902148 (-)
G116407 NA non-coding downstream 1724 36727991 ~ 36728239 (-)
G116398 LOC108440873,LOC103043543,LOC108440897,LOC107667378,LOC107711060,LOC108271751,LOC107582700 non-coding downstream 8070 36710256 ~ 36721893 (-)
G116399 LOC108440873 non-coding downstream 21790 36707769 ~ 36708173 (-)
G116413 LOC108440873 non-coding downstream 30593 36696905 ~ 36699370 (-)
G116412 LOC108440873 non-coding downstream 34518 36691957 ~ 36695445 (-)
G116434 NA non-coding upstream 66451 36799842 ~ 36820814 (-)
G116426 krt5,LOC108440946,LOC108440969,LOC106565226,LOC103466878 non-coding upstream 121469 36854860 ~ 36855962 (-)
G116475 os9,LOC107711069 non-coding upstream 220399 36953790 ~ 37010174 (-)
G116483 NA non-coding upstream 231141 36964532 ~ 36971714 (-)
G116492 NA non-coding upstream 263503 36996894 ~ 36997753 (-)
LOC103028059 ghrl other downstream 667679 36056563 ~ 36062284 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other downstream 771145 35955109 ~ 35958818 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other downstream 849672 35869803 ~ 35880291 (-)
G116068 myhz2,LOC108440470,LOC108443907,LOC107385141 other downstream 914641 35813621 ~ 35815322 (-)
LOC103033855 oxtr,LOC107749620 other downstream 1878811 34825836 ~ 34851152 (-)
LOC103023810 NA other upstream 288784 37022175 ~ 37031363 (-)
G116581 eif4b,LOC108441049 other upstream 307970 37041361 ~ 37045788 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other upstream 1500083 38233474 ~ 38248624 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other upstream 1647879 38381270 ~ 38384598 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other upstream 1897246 38630637 ~ 38899446 (-)

Expression


Co-expression Network