LOC107197751 (LOC108439999,LOC108440912,LOC107580767)


Basic Information

Item Value
gene id LOC107197751
gene name LOC108439999,LOC108440912,LOC107580767
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36737746 ~ 36742046 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675780.1
TTTATAGGTGTTAGCAGGTGGGCGTGTGTGGAGATCGTTCTGCTCTTAGGGAGGAAAGATGCCGGTTTTAATGCACGCCTGCACTTTACTGCTAAAAATCCTCACCCTGCCGCTGCAGGTGGCGGAGCTGCTGGGTATATACAAATTCTACAAGCGCGTGTTTCCCGTCATCGTGTACAACATTAGCTTCTCCTACAACAGCAAGATGAACGAGAAGAAGCGCGAGCTGTTCCGCGAGCTGCAGCGCTTCTCCCCGCGCGGAGGAGGGCCGCTGCGTCTGCTGGAGGTGGGCTGCGGCAGCGGCGCCAACTTCCAGCACTACCCCACCGGCACCAGGGTCACCTGCACAGACCCCAACCCCCACTTCCAGAACTACCTGCAGAAGAGCATGGACAAGAACGACCACCTGGTGTACGAGAAGTTCGTGGTGGCTCCTGGAGAGGACCTGAGGGTCGTGGAGGATAACTCTGTGGACGTGGTGGTCTGTACACTGGTGCTGTGTTCCGTTAAAAACACTCCCAAGGTTATCGGGGAGGCAAAGAGAGTCCTGAGACCGGGTGGAGCATTCTTCTTCTTGGAGCATGTGCAGGCGGACCCTTCAAGCTGGATTTACTTCTTTCAGCATGTTTTCCAGCCTTTAATGTACTATTTCGGTGATGGTTGTGAAACTACACGTGCTACATGGAAGCATCTGGAAGCAGCCGGTTTCTCTGACTTGCAGCTTCGCAAATTCCAGGCTCCACTTTTCTTCCTTATCAGACCACACATTGTCGGTTATGCTGTAAAATAATGGCAACACAAAAAGTTAGACCTGTATAAACTCAttgtatcatttatatatatttttatatgttattttttgtatatgtcACTGTAAGACAGTTTGGCCACAAATGTACTTCTAAagtaatgttcttaaaatgtcatatttactTGTTATGAGGATGTAAATCCATGCCTGAGATCTGAAATTTAATGAGATTTGTAAAAAAGTAATTCCCTTCTTGGGCAttgcattaaaaatgcattcaaagttTCTATTATACTGTACTAAAGTTTACCACTACATTATCTATATTAGTATCTCTGTTTCCTTTACGGGTGTCTGTAGACATTGAAAATCCTGCCCTGCCAACATGAGCTTTACCAAACAAGTGCTGCAGCACATCACTACACACATAGCATGGGTGATTAAACctagtaatatatttttatataattaacagGAAATCTCTGTTCAAactgctgtgtagtccaagccTAGGCTTAACCCCTGTCTTGGGAAACTGCTCCcatatttttactaaaaaagtTATGCTTTGTGTACTTTAACAAGAAAACAGCACTTGTTGAAGATTGCAAGGGATTAAGCAGTTAAATCTTAGAATAAAGATTTCCCATTGAAAGTCAAATTCATGTAAGGACTACGCCTACTCCCTGTCTGGAAAACCGACCCTTAAACATACACAGAAATTATTGTCAcagtttaatgtatttttgtatatataaagtTAATCTTAATTTTGTATGTTATCAAGGCCAATCAGAACATTAGCTTCTgaattataaatacattatattaacaGCAAGGGCTGGCATGGTAAAAGACTGCAGACATAttcaataaaagtgtttttgttaGCAGTAAATGGATCATAAAATTAACCAGAAGAAAAGTATGATAGTGAAACAACATGAAATAAGAGAGATGGATAGCagaaatataaagtatatttgACATAAGATACATGGCAAAGTCACAAGAACAAAGATAATATTGTTCTAGTGTAATGTGCCAAAATGTGCAGCATTGCAAGAATGGTCTTAAGTCTGAAGAAGAAATCAAGAGTTAAAAGGTCTACGTACACTAGATGGCACTGATAGGCATAgtgttttatctaaaaaaaaaaaaaaactgggaa

Function

NR:

description
PREDICTED: methyltransferase-like protein 7A

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675780.1 True 1922 mRNA 0.41 3 36737746 36742046

Neighbor

gene id symbol gene type direction distance location
LOC103029516 NA coding downstream 4355 36729963 ~ 36733391 (-)
LOC103029840 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC106565516 coding downstream 217638 36488583 ~ 36520108 (-)
smarcc2 smarcc2,LOC107711050,LOC107667400,LOC107748388 coding downstream 257545 36459983 ~ 36480201 (-)
LOC103022488 LOC108439971 coding downstream 294991 36433932 ~ 36442755 (-)
LOC103030168 itpr1a,LOC108440748 coding downstream 310037 36360752 ~ 36427709 (-)
LOC103042096 LOC103042096,LOC108440962 coding upstream 83239 36825285 ~ 36830441 (-)
LOC103041794 LOC108440955,LOC108272218 coding upstream 92024 36834070 ~ 36839043 (-)
LOC103041181 NA coding upstream 140764 36882810 ~ 36892252 (-)
LOC103040574 LOC108440011 coding upstream 153813 36895859 ~ 36902148 (-)
b4galnt1 b4galnt1,b4galnt1b,LOC107673615,LOC107667298,LOC107711068 coding upstream 181244 36923290 ~ 36940623 (-)
G116407 NA non-coding downstream 9507 36727991 ~ 36728239 (-)
G116398 LOC108440873,LOC103043543,LOC108440897,LOC107667378,LOC107711060,LOC108271751,LOC107582700 non-coding downstream 15853 36710256 ~ 36721893 (-)
G116399 LOC108440873 non-coding downstream 29573 36707769 ~ 36708173 (-)
G116413 LOC108440873 non-coding downstream 38376 36696905 ~ 36699370 (-)
G116412 LOC108440873 non-coding downstream 42301 36691957 ~ 36695445 (-)
G116434 NA non-coding upstream 57796 36799842 ~ 36820814 (-)
G116426 krt5,LOC108440946,LOC108440969,LOC106565226,LOC103466878 non-coding upstream 112814 36854860 ~ 36855962 (-)
G116475 os9,LOC107711069 non-coding upstream 211744 36953790 ~ 37010174 (-)
G116483 NA non-coding upstream 222486 36964532 ~ 36971714 (-)
G116492 NA non-coding upstream 254848 36996894 ~ 36997753 (-)
LOC103028059 ghrl other downstream 675462 36056563 ~ 36062284 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other downstream 778928 35955109 ~ 35958818 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other downstream 857455 35869803 ~ 35880291 (-)
G116068 myhz2,LOC108440470,LOC108443907,LOC107385141 other downstream 922424 35813621 ~ 35815322 (-)
LOC103033855 oxtr,LOC107749620 other downstream 1886594 34825836 ~ 34851152 (-)
LOC103023810 NA other upstream 280129 37022175 ~ 37031363 (-)
G116581 eif4b,LOC108441049 other upstream 299315 37041361 ~ 37045788 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other upstream 1491428 38233474 ~ 38248624 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other upstream 1639224 38381270 ~ 38384598 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other upstream 1888591 38630637 ~ 38899446 (-)

Expression


Co-expression Network