LOC111193784


Basic Information

Item Value
gene id LOC111193784
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38964132 ~ 38971739 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675813.1
GTAATGCTGGTGAGGATGTTATTCTGATACTTTAAATGGAGCTTACACTCCAGGATTATGTTAAAATGCGGTCATTACCGGATAGTACCGGTAGTTCCGTTTACAGTCCACACACAGTCCTGAACTGTAACTGAGCTTTAGGGGATTTGTTTGGTGAGAACTGTAGGCGGGCCGACCTACTGAGTGCGCTTACTGTAAGTACACAGGGCTGAGACTTGGGTAGAGCCGCTGCTGCTGCGCACCTGTGAAGATTAGCTTACTTTAGCAGCCAAAAAGCTTGACGTGAGTCCTCTGTTTTAGTCAATGTTCAGTTCAATTTTACCTACCAGTGTTGGAAACGCATAAACAGTAGATTAAAGGAGTGTAGCTGGGTGTACTGAGGAGCTGTGAGGTCCATGTACCTCCTGGGGTCTCAAGATGGCATCAACACTTTTGTAACTGACAGAATGATGCTGCAGAATCTGCACTGCTCACCCACGCCGTCACACTGGTCCCCAGGGCCCTGGCTGAAGTGAACGTAGTTTTTTCATCTGCATTGATTGATTGTGCTCACAGCAGTTTTCTTGTCCATCCTAAAGAACATTTGTCTGTCAGCTGTAATTTTCAGTCACTCAAACACTATGAGTAAACTCAATCCTGAGGACGCCCTTCCAGACTCAGACTCTCTTCCTGAAGCCAGCAGTGTCAGACCTCAGGCTGACCCCAAGCCTTTACCTGCTGACCCCTTGTTGCCTAGCAACGAGACCCTTCAAAGCAGATCATCTTCTTTTTCTgacttcagcagcagcagctgcagcagcagcatggcCAGCGACAACCGCTCCAGCTACAGTCCCTATCAGCCTCCCTTGGGTCTCCCAGCTGGTTACAGCCCCAAGACTCCCTTCCCCAGCCAGGCAGATGGTTGTTTCAGTACGCTGGAGCCCCACAAAGAGGACTGGCTCAACCCAAGTTCATATAACAGTGTGTTTAGGGGATTCTCCAACGGCAGCCGTCCGTCCTGCATGGTATCTGGGGACTTCAGTGTTTTTCAGGGCGAATCCTATGGGTCCCATTTTTTGCCGGACGGACACAGTCCAGGTGGGAGCAGTTTGGAACAGCCCCACTCACTTCACTCCATTCCTACTGCATTAGCCCAGCACAGTTACTACCCACCTCCGTGCCCATGCCCTTCATATAGACAGGAATGCTGTGGGCAGGGCCCACTGGACACATACTGGGAAAATCACAGGCTCCATCAGGCGGTGCAGTATCACGTGCCAGGTTCATCTTCATGTCCTAGGAGAATCAAACAGTCAGACCAAGAGCTCATTCACAGCAGGCACCCGTCTGTTCAGCCTCAGAAAACGAGTGTTCCGAGCACTGCACCCCTCTCTCTGGAACAGCGTGAGTCATCCCTGTTTTTCTTCCAGTTATTGGGTTATGTAAATTGAATAAATCACAAAATATGAAATGTGTAGCTGCCAGCTCAAAACTTTTAGTTTTAGACCGTTTGAAAAATAATCAGCCTGTTCTTTACGCTGTCTGAAGGTTTTCCAATGCAACAGtaatgcttaataaaatacacactCATCATGATCGCAAGAAAGATAGGTGTAATGCGCAGGCAAATCACATGTAAGCTCTCCTTGTTGCACACGGAATATTTTACATGTGGATATGATTTCTGATCGGTGCTTGTCTGACCAGGTGCCGCCTGTCATCATTACTACCCACTGTGCTGTCAAGTGTGGGTGGTAAATGCCTTTTATTCCCGGTACACCCAGAACACTGACAGgttaaatgcccacacaacttTGGAAATGGACTTTTTGTGCTGTTATTTTGTAAGGATTGATCACATTAAgtaaaaatgacagaaatacaaaaaaatggatTCACAAACTTCAGTGTCAGTGTATACATCTGATATACCTAAACATTAGCACCTCAAacaggttaaagaaaaaaaaatattgagatattttatGCAGATATATTATGTTCTAAAAGCAGGAAATATTTGGCAAGCAGAAATGTGCAACACTGACAAGAAACAAACAGTTTTTGTGGGGTTGAGACGATCACACCTTTTTAATTAGGGATAGTTGGATCTAGAACATAAtgtttaataagaaaaaataaaaatcaggtaAAATCATTAAAAGCTTTATTGATGTAAGAGCTGATAAAAACACTCTAAAACTGCTGTGTTCTCTAGTACCACATTGGGAGAATTAGCTGGAAGGCACCAACGACAGGAACCtaacaaaaaatacttttccCTATTCTGAACAACAAGATAGCTATctagaaaacaaataaaacaaaaaagcaaactaCTTAAAACTTACCAGAccaataaacaaatacaatggGTGGGGTATCTAAACAGAGCAATGTTCTACATGGTCTGAAATACATAGGACCTTTTCTTAAATCTCTAAAACCCCAGGTGGCACACTCAATCAAACCTCCTGTAAAGCCAGATTAAAAGCTACACCTAAAAGATATACCTAAAACCAACACACTTTCTAAAACAAAGAGTTTAACttctttaaaacacaaacatggtAGATGGTAGTCATCTTGGATCCTGCATTTAAAATGTTGGCTCTTCCCTCCAATACTCCAGCCAGGCCTCTAATTGGTGTCTGGATTTCACCAAATTAGAGCAGGAGAGAAGGAAACCTGTGGAGGGAGATCcagggagaaagagacaaacaaaaaaaataaacagaggtgTTTCTGGTATGCTGTGCTTAGTACCATGAAAATTGGTTTAACTGGTGAACCAGTGACGGGGTTATAGGCCAAGGCTTGTGAGTGTGATCTATATAAGCCCTGGTTAATCTGCTGCAAAtgtcttggtgccagataccaGAGGAgaccttcagaggtcttgtgaAGTCCTTGCTTTGAACGGTTAGATTCGTTGTGGTGGCACAATGTGGACCCAATCAATACTAGGAAAGTGGTGCTAAT
>XM_022675814.1
TGAGGATGTTATTCTGATACTTTAAATGGAGCTTACACTCCAGGATTATGTTAAAATGCGGTCATTACCGGATAGTACCGGTAGTTCCGTTTACAGTCCACACACAGTCCTGAACTGTAACTGAGCTTTAGGGGATTTGTTTGGTGAGAACTGTAGGCGGGCCGACCTACTGAGTGCGCTTACTGTAAGTACACAGGGCTGAGACTTGGGTAGAGCCGCTGCTGCTGCGCACCTGTGAAGATTAGCTTACTTTAGCAGCCAAAAAGCTTGACGTGAGTCCTCTGTTTTAGTCAATGTTCAGTTCAATTTTACCTACCAGTGTTGGAAACGCATAAACAGTAGATTAAAGGAGTGTAGCTGGGTGTACTGAGGAGCTGTGAGGTCCATGTACCTCCTGGGGTCTCAAGATGGCATCAACACTTTTGTAACTGACAGAATGATGCTGCAGAATCTGCACTGCTCACCCACGCCGTCACACTGGTCCCCAGGGCCCTGGCTGAAGTGAACGTAGTTTTTTCATCTGCATTGATTGATTGTGCTCACAGCAGTTTTCTTGTCCATCCTAAAGAACATTTGTCTGTCAGCTGTAATTTTCAGTCACTCAAACACTATGAGTAAACTCAATCCTGAGGACGCCCTTCCAGACTCAGACTCTCTTCCTGAAGCCAGCAGTGTCAGACCTCAGGCTGACCCCAAGCCTTTACCTGCTGACCCCTTGTTGCCTAGCAACGAGACCCTTCAAAGCAGATCATCTTCTTTTTCTgacttcagcagcagcagctgcagcagcagcatggcCAGCGACAACCGCTCCAGCTACAGTCCCTATCAGCCTCCCTTGGGTCTCCCAGCTGGTTACAGCCCCAAGACTCCCTTCCCCAGCCAGGCAGATGGTTGTTTCAGTACGCTGGAGCCCCACAAAGAGGACTGGCTCAACCCAAGTTCATATAACAGTGTGTTTAGGGGATTCTCCAACGGCAGCCGTCCGTCCTGCATGGTATCTGGGGACTTCAGTGTTTTTCAGGGCGAATCCTATGGGTCCCATTTTTTGCCGGACGGACACAGTCCAGGTGGGAGCAGTTTGGAACAGCCCCACTCACTTCACTCCATTCCTACTGCATTAGCCCAGCACAGTTACTACCCACCTCCGTGCCCATGCCCTTCATATAGACAGGAATGCTGTGGGCAGGGCCCACTGGACACATACTGGGAAAATCACAGGCTCCATCAGGCGGTGCAGTATCACGTGCCAGGTTCATCTTCATGTCCTAGGAGAATCAAACAGTCAGACCAAGAGCTCATTCACAGGCACCCGTCTGTTCAGCCTCAGAAAACGAGTGTTCCGAGCACTGCACCCCTCTCTCTGGAACAGCGTGAGTCATCCCTGTTTTTCTTCCAGTTATTGGGTTATGTAAATTGAATAAATCACAAAATATGAAATGTGTAGCTGCCAGCTCAAAACTTTTAGTTTTAGACCGTTTGAAAAATAATCAGCCTGTTCTTTACGCTGTCTGAAGGTTTTCCAATGCAACAGtaatgcttaataaaatacacactCATCATGATCGCAAGAAAGATAGGTGTAATGCGCAGGCAAATCACATGTAAGCTCTCCTTGTTGCACACGGAATATTTTACATGTGGATATGATTTCTGATCGGTGCTTGTCTGACCAGGTGCCGCCTGTCATCATTACTACCCACTGTGCTGTCAAGTGTGGGTGGTAAATGCCTTTTATTCCCGGTACACCCAGAACACTGACAGgttaaatgcccacacaacttTGGAAATGGACTTTTTGTGCTGTTATTTTGTAAGGATTGATCACATTAAgtaaaaatgacagaaatacaaaaaaatggatTCACAAACTTCAGTGTCAGTGTATACATCTGATATACCTAAACATTAGCACCTCAAacaggttaaagaaaaaaaaatattgagatattttatGCAGATATATTATGTTCTAAAAGCAGGAAATATTTGGCAAGCAGAAATGTGCAACACTGACAAGAAACAAACAGTTTTTGTGGGGTTGAGACGATCACACCTTTTTAATTAGGGATAGTTGGATCTAGAACATAAtgtttaataagaaaaaataaaaatcaggtaAAATCATTAAAAGCTTTATTGATGTAAGAGCTGATAAAAACACTCTAAAACTGCTGTGTTCTCTAGTACCACATTGGGAGAATTAGCTGGAAGGCACCAACGACAGGAACCtaacaaaaaatacttttccCTATTCTGAACAACAAGATAGCTATctagaaaacaaataaaacaaaaaagcaaactaCTTAAAACTTACCAGAccaataaacaaatacaatggGTGGGGTATCTAAACAGAGCAATGTTCTACATGGTCTGAAATACATAGGACCTTTTCTTAAATCTCTAAAACCCCAGGTGGCACACTCAATCAAACCTCCTGTAAAGCCAGATTAAAAGCTACACCTAAAAGATATACCTAAAACCAACACACTTTCTAAAACAAAGAGTTTAACttctttaaaacacaaacatggtAGATGGTAGTCATCTTGGATCCTGCATTTAAAATGTTGGCTCTTCCCTCCAATACTCCAGCCAGGCCTCTAATTGGTGTCTGGATTTCACCAAATTAGAGCAGGAGAGAAGGAAACCTGTGGAGGGAGATCcagggagaaagagacaaacaaaaaaaataaacagaggtgTTTCTGGTATGCTGTGCTTAGTACCATGAAAATTGGTTTAACTGGTGAACCAGTGACGGGGTTATAGGCCAAGGCTTGTGAGTGTGATCTATATAAGCCCTGGTTAATCTGCTGCAAAtgtcttggtgccagataccaGAGGAgaccttcagaggtcttgtgaAGTCCTTGCTTTGAACGGTTAGATTCGTTGTGGTGGCACAATGTGGACCCAATCAATACTAGGAAAGTGGTGCTAAT

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0030098 lymphocyte differentiation biological_process
GO:0002520 immune system development biological_process
GO:0042110 T cell activation biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:0030217 T cell differentiation biological_process
GO:0002376 immune system process biological_process
GO:0046649 lymphocyte activation biological_process
GO:0045321 leukocyte activation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675813.1 True 2964 mRNA 0.44 5 38964132 38971739
XM_022675814.1 False 2951 mRNA 0.44 5 38964132 38971729

Neighbor

gene id symbol gene type direction distance location
zranb2 zranb2,LOC107685308,LOC107726518 coding downstream 452754 38504126 ~ 38511378 (-)
ptger3 ptger3,LOC107585167,LOC107711104,LOC107673459,LOC107682156,LOC107734856 coding downstream 462980 38490785 ~ 38501152 (-)
LOC103034364 NA coding downstream 552424 38407298 ~ 38411708 (-)
gtpbp6 gtpbp6,LOC104953295 coding downstream 561579 38395866 ~ 38402553 (-)
slc9a7 slc9a7,LOC107673530,LOC107711095,LOC107753405,LOC107685298 coding downstream 623290 38263121 ~ 38340842 (-)
chd1l NA coding upstream 410 38972149 ~ 38996466 (-)
LOC111193785 NA coding upstream 6997 38978736 ~ 38981145 (-)
LOC103032030 zgc:110788,LOC108440097,LOC107711028,LOC107673477,LOC107726515,LOC107585211,LOC107580362 coding upstream 25139 38996878 ~ 39000165 (-)
LOC103031712 tmem45a,LOC107685333 coding upstream 30963 39002702 ~ 39011754 (-)
lnp1 lnp1 coding upstream 41299 39013038 ~ 39025162 (-)
G116923 NA non-coding downstream 336017 38626779 ~ 38628115 (-)
G116933 NA non-coding downstream 337706 38625623 ~ 38626426 (-)
G116927 NA non-coding downstream 367337 38595480 ~ 38596795 (-)
G116926 NA non-coding downstream 370639 38593068 ~ 38593493 (-)
G116906 NA non-coding downstream 476501 38487226 ~ 38487631 (-)
G116946 NA non-coding upstream 28904 39000643 ~ 39002353 (-)
G116954 opa1,LOC107585173 non-coding upstream 74608 39046347 ~ 39049565 (-)
G116961 NA non-coding upstream 179089 39150828 ~ 39151231 (-)
G116964 NA non-coding upstream 213776 39185515 ~ 39185756 (-)
G117002 NA non-coding upstream 389731 39361470 ~ 39361798 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 438 38953162 ~ 38963694 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other downstream 64686 38630637 ~ 38899446 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other downstream 579534 38381270 ~ 38384598 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other downstream 715508 38233474 ~ 38248624 (-)
G116581 eif4b,LOC108441049 other downstream 1918344 37041361 ~ 37045788 (-)
LOC103028549 NA other upstream 312478 39284217 ~ 39291028 (-)
LOC103040080 LOC108440156 other upstream 1388580 40360319 ~ 40363960 (-)
LOC103034527 NA other upstream 1759557 40731296 ~ 40769682 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other upstream 1844394 40816133 ~ 41017814 (-)

Expression


Co-expression Network