LOC111193785


Basic Information

Item Value
gene id LOC111193785
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38978736 ~ 38981145 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675819.1
taaaagtCAGTGTGACCCTGTTTCATTACAATATTTAAGCTTTTAAGACATGCCCTCTGTAGTGGACATTGGTAGttatgtttttgattttgttctgttttttttaaacatgagaAGGGCAGGATTCATTATCAGAGGCAGAGAGGATTTTGCTGCAAATTGTTGAGGGAAATTCAGACATTAAGCTGTCAGAAGAAGAGAAGGAAGATGGAAGTATTGAAGGAGAaggcagaggagagagagatgtgttaGACAGCTCTGAGGATGAAGGTTTAGCAGGGCAAGAGCAgacagaggaggaagaggaatcCGGACCTTCCTCTTCTTCCAGCCACTGTTCTCTCTGGGGCAAGACTACAATgtGGGGTTGGTTTGAACCTGACAGCAGCTGATACTGTGATTTTTGTGGACAGTGATTTCAATCCCCAAAATGACCTACAAGCAGAAGCTCGAGCCCACCGGATTGGACAGGAAATGTATCGCCGGAAAATGCTGTATACATTGGCGACACCGTATTTGAGGAAATGGCCATGTGCACCAATCAGATGGAAGTGCTTGTTTCAGGAAAATCACTAAACACCACTCCTGAAGAGCTGCAAACCTTCTTCGGAGATTCCATGTACATGAGCTGTCTGGGCTACCCAAATATCGAAATGTATTGGGCGAATAACACCAGGGTGGAAATTGTGGCTAAATCAATGACAAGAAATCGATTCTACAAGATACGAAATTCCATTAAGATGGTCAATGAGATTGATGTGTCTAAAGATGACAAAAAAGGAGATCTCTTGTGGAGAGTCAGGCCCCTCCTCGCCAAAGTTCGTCAAGGATGTCTGAGCCTTCCGAGAGAGGGAAAATTGTGCATCGATGAGCAAATGATACCATTTACTGGTCGCTGCCCAGTGCGCCAGTTTGTACCAGGCAAACCATATCCGACAGGATTGAAGGTGTTTGTCTTGGCAGATCTTAGGGGCTGCCAAGGGGCTTATGGGCTGATCTTAGACTTCGTTGTGTATCAAGGCAAGACCATCTTCAGTGTCACAAAAGGGTGCATCGGAGAGCAAGCTGTCCTTCATTTGGTAGAGACTGTTCCCCAAGGAACCCACCTGTTCTTTGACAGGTTCTTCACAAGTGTGAACCTTCTGGAAGTCCTAAAGGCAAAAGGGTTGACCGGTACTGGAACTCTCATGAAGAACAGAGTTCCATTTGAGTGTAACATTTATAGACGACAAGGCCTTCcaaaagaaaggaagagggGCATCACAGATGGTGGTCTATCGAAGTCCTGCTCCTGAAGTTGCAGTCTTGAAATGGATGGACAACAAGCCAGTGGCCCTGGCATCAACTGCCTTTGGTTTTGAGCCCCAGGATACGCGCCAAAGATGGTCGAAGAAAAGCAAGAAGTTCGTCCAGGTGTCCAGACCAAAGGCAGTTTCTGAGTACAAAACAAATATGGGTAGTGTAGATTTGGCCGACAGGATGCTGAACTACTACAGGATGGCCACTCGGAGCAGGAAGTGGACTGTACGTGCACTGTTCCACTTTTTTGATCTGGCAACTACCAATGCACGGTTTCAGTACAGGACTGACTGCCAGATCCTGCAGAAGAAAGCAGAGAAATTTCTTGATTTCAAGATGCTCCTTGATGAGCAGCTAGTTGCTCAGGGCCAAGCAAGAGTTGCAAGTGACAGTGATGAAGACTACACTCCCACCCCCGAACACCAAAAGTGGAAGCCACAGCCGAATGCTGCTCTGAGATACTACGGGGCCGCCCATCTCCCTCAGATGGTGGATGAAACACATGCCTCAAGATGTCGCCAAACTGGTTGCAAGAGCAAGACCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675819.1 True 1844 mRNA 0.47 2 38978736 38981145

Neighbor

gene id symbol gene type direction distance location
LOC111193784 NA coding downstream 6997 38964132 ~ 38971739 (-)
zranb2 zranb2,LOC107685308,LOC107726518 coding downstream 467358 38504126 ~ 38511378 (-)
ptger3 ptger3,LOC107585167,LOC107711104,LOC107673459,LOC107682156,LOC107734856 coding downstream 477584 38490785 ~ 38501152 (-)
LOC103034364 NA coding downstream 567028 38407298 ~ 38411708 (-)
gtpbp6 gtpbp6,LOC104953295 coding downstream 576183 38395866 ~ 38402553 (-)
LOC103032030 zgc:110788,LOC108440097,LOC107711028,LOC107673477,LOC107726515,LOC107585211,LOC107580362 coding upstream 15733 38996878 ~ 39000165 (-)
LOC103031712 tmem45a,LOC107685333 coding upstream 21557 39002702 ~ 39011754 (-)
lnp1 lnp1 coding upstream 31893 39013038 ~ 39025162 (-)
LOC111193786 NA coding upstream 290645 39271790 ~ 39282915 (-)
uhmk1 uhmk1,LOC107692420 coding upstream 1638337 40619482 ~ 40636689 (-)
G116923 NA non-coding downstream 350621 38626779 ~ 38628115 (-)
G116933 NA non-coding downstream 352310 38625623 ~ 38626426 (-)
G116927 NA non-coding downstream 381941 38595480 ~ 38596795 (-)
G116926 NA non-coding downstream 385243 38593068 ~ 38593493 (-)
G116906 NA non-coding downstream 491105 38487226 ~ 38487631 (-)
G116946 NA non-coding upstream 19498 39000643 ~ 39002353 (-)
G116954 opa1,LOC107585173 non-coding upstream 65202 39046347 ~ 39049565 (-)
G116961 NA non-coding upstream 169683 39150828 ~ 39151231 (-)
G116964 NA non-coding upstream 204370 39185515 ~ 39185756 (-)
G117002 NA non-coding upstream 380325 39361470 ~ 39361798 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 15042 38953162 ~ 38963694 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other downstream 79290 38630637 ~ 38899446 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other downstream 594138 38381270 ~ 38384598 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other downstream 730112 38233474 ~ 38248624 (-)
G116581 eif4b,LOC108441049 other downstream 1932948 37041361 ~ 37045788 (-)
LOC103028549 NA other upstream 303072 39284217 ~ 39291028 (-)
LOC103040080 LOC108440156 other upstream 1379174 40360319 ~ 40363960 (-)
LOC103034527 NA other upstream 1750151 40731296 ~ 40769682 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other upstream 1834988 40816133 ~ 41017814 (-)

Expression


Co-expression Network