LOC103022251 (brinp3a.2,LOC108440126,LOC107711116,LOC107732449,LOC107685312,LOC107667973,LOC107585215)


Basic Information

Item Value
gene id LOC103022251
gene name brinp3a.2,LOC108440126,LOC107711116,LOC107732449,LOC107685312,LOC107667973,LOC107585215
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 39517500 ~ 39594023 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675824.1
tcacagacacacacagatacacacacacagacagacacacgcaTACGCGCGCTCGCGCACActctctcacagacacacacacacacagggaggacgATGCGGAGCAGGAGGGTCAGGCAGAGCAGCGCTTTCTCGGACTTTATGAGGGATTTTTGTACGCGTCGTCCGTCGGCGTTACGCACCGCGCAGCAGCACTGCGGTCCCTGTCGCGGCTCTAAGCGCGGCGCTCCCCTTCGCTCGCGCTGAAAGGATACGCTTCAGCTCGGTTCGGGACCGCGGGGTCGTTTCAGGCGCGTGCGGGAGCTACTGACCAAACAACCGGACAACCGGACAGTCCGACAGCCTTCGCTAACGCTGCTGCACAATGGGAGCAGTGTGTTACCCAAGTTCATCAGTGGACTAGGGCACAGGCACGGGTGCTGGCACGGGTACTGGTCTAGGCTACTTCTGGTGATCTCGCTCGTGCTTTGATTGATTTCTGCCCTGTTTCTCCTCGCCTCGTTCTAATCTCGCTCCTCGCTCTGGCTCGCGCTAAAGCCCAGCGCGCGAGGAAGTAGTTGTCGGGGTTCGGGAGAAGAAAAGAAGCTGCACGCGGAGGATGGGACGCGCCCGGGTGAAGTTTGCGCACTGCACGCTGTTGGGGTGTACATTCTGTCCTTTCTCCAGATGTTCGTGGGGACAGGTGGCCATGCTGATCTGCGGTGCTGAGCGGTGGAGTGTACTGTTGCCTCAGTGTCTGTTCTGCTGAAGCCTGCGGTGCTTGGCCCCCTCATGGCTCTATGGGAGCTCTTGCTGTCCCTGGGCCTCCACTGCTGGCTGGCTGCTTCTGCCAGTCTGGCTGAGGATGGTCCCGCTGGGCCCCTGGACTGGCTTCTATCAGACAAGGGACCCTTCCACCACTCCCAGGAGTACACCGACTTTGTGGAGAGGAACCGCCAAGGCTTTTCCACCCGATACAAGATATACAGGGAGTTTGGCCGCTGGAAGGTGAATAACCTGGCTGTGGAGCGGAGGGATTTCCTGGACTCCCCGTTACCTCTCACCCCCGAATTCATTCGGAACATTCGACTCCTGGGCCGCAGACCCTCCGCCCAACTAATTACTGACAACCTGATCAAGAAATATGGGACTCATTTCCTCCTCTCAGCTACACTAGGAGGAGAGGAGGCTCTCACCATATTTGTGGATAAGAGGAAGCTGAGTAAGAAGGCAGAGGTGAGCGACTACACCAGCAACAGCACGGCTGTGACTCTGGAGGCGCTCCACCAGCTGGCTGCCTCCTACTTCATAGACCGGGAGAGCACGCTGCGCAAGCTGCACCACCTCCAGATCGCCTCGACAGCCATCAAGGTAACAGAAACAAGGACTGGCCCTCTTGGTTGCAGTAACTATGACAACCTTGATTCTGTTAGTTCTGTGCTTGTTCAAAGCCCAGAAAACAAAGTCCACTTGCAAGGCTTGCAGGTCATTCTGCCAGACTACCTCAAAGACACCTTTGTCCAAGCAGCTCTCAGCTACATCGCCTGCAATGGAGAAGGAGACTTTGTCTGCCGAGGCAACGACTGCTGGTGCAAGTGCAACTCCAAATTCCCAGAATGCAACTGTCCGTACATGGATATTCAAGCCATGGAGGAGAGTCTTCTGCGGATCTCGGAGTCATGGAACCTCCTCTACAAAGAGTTTAAGGATTCCGaTGAGTTCAAGACATTCCTGATGAGGCTGCCTCAGAACTTCTTCCTCAACACATCGACCATCCAGCACTTGTGGCTGCTGGATGGCACGTTTCAGCGGCGTTATGAACTGCTGGAGAGCAGTATGAAGGGCCTCTTCAGGAGGGCTCAGCGAGTTGTGTACAAGCTCTTCAGCCTCAGCAAGAGGTGTCAAAAGCAGCCCCTCATCAACTTACCCCGCGAAAGGCCGCGGTCGTACTGGCTGAACCACTTCCAGTCATTACTCTACTGCTCAGAAAGCAACCAGCTGGGATTCTTCTCCGAGGAGCTGCACACCTGCATCTGTGCGTACGACCAGAACTCGTGCCAGGTGCCCACTCCGTGCTCTATCGGAGAGGGTCCAGCTTGCTCTGCGTGTGCCAGTGACAACCACACCCGCTGTGGCAGCTGCAATCCTGGCTACATGCTGAGTCAGGGAGCCTGTCGACCCATGGTGGCGGATTCTACGGAGAACTACCTGGGTTTTGAGACTGACCTGCAGGACCTGGAGCTGCGTTACCTCCTGCAGAGGGCCGACCGCCGCCTGGAGGTTCACGCCATCTTTATCAGCAATGATATGCGCCTCAACAGCTGGTTCGACCCCTCCTGGAGGAAGAGAATGTTACTCACCCTGAAGAGCAACAAGTACAAGTCGAACTTGGTGCACATGCTTTTGGGAATCTCCCTTCAAATCTGCCTTACTAAGAATAGCACCCTGGAACCTGCCCTGACTCTCTTCATCAACCCCTTCGGCGGGAGCCACTCGGAGAGCTGGTTGATCCCTGTGAGCGAGAACAATTTCCCAGACTGGCAGTCCACCAAGTTGGATCTTCCACTAGAATGTTTTAACTGGACCTTGACTCTGGGCAACAAGTGGAAGACCTTCTTCGAGACCATTCACATTTACTTAAGGAGCCGCATAAAAACATCAGGGACTAGTGCCAACGAGAGCATTTACCTGGAGCCTCTGGAAATGACTGATCCTTCCAGGAACTTGGGCTACATGAAGATCAACAGCATCCAAGTGTTTGGCTACAGTATGCATTTTGACCCAGAGGCGATACGGGATTTGATCCTGCAGCTGGATTACCCGTACACGCAGGGCTCGCAGGATTCCGccctgctgcagctgctggagATACGGGATCGCGTGAACAGGCTTTCTCCGCCGGGCCAGCAGCCTCTGGACCTGTTCTCCTGCCTACTGCGCCACCGCCTCAAACTCACAGCCAACGAAGTGGTGCGCATCCATTCTTCTCTGCTGGCCTTCAGTGCCCGACTCCCAAACTCTCTCGATTATGAGACGACTAAACTCTGTAGCTAACAGCTAGAAGCCCAGAGAGCTGTACAATACCttcacacacagacaaagaCTGTGCATGAGTCAGCGCtgcaaatagagagagagaaaaaaagacagaaagacagaaagaaggaaaacaaGTAAAGTAAGAATGCAAAGTAAAGTATGGTGATGTATGATGGATTCATAATAAACTAATTGAGTCATCCGCAGAGATATTTCACAGATTCctcattcacacattcacaGAGCATTGTACTCAAAACAAAGGAGTCATTTTCTTGTAATGGTGCAGCACTAAGATCATAAAGGAGGGACAGGGACCTTTTACATATATGGTATGATTGTTTGTAACTTTTCTATGTTCTATTGCTTCAGTGACTGTGCACTTTCCTTGGACAGAatacagtgatgtcagtaagtTTTGTAGATAAAATTGCTATTAAAACATCATGTAATAACA

Function

symbol description
brinp3a.2 Predicted to be involved in cellular response to retinoic acid; negative regulation of mitotic cell cycle; and positive regulation of neuron differentiation. Predicted to act upstream of or within regulation of cell cycle. Predicted to be active in dendrite; endoplasmic reticulum; and neuronal cell body. Is expressed in several structures, including fin; fin bud; gill; head; and muscle. Human ortholog(s) of this gene implicated in coronary artery disease and myocardial infarction. Orthologous to human BRINP3 (BMP/retinoic acid inducible neural specific 3).

NR:

description
PREDICTED: BMP/retinoic acid-inducible neural-specific protein 3-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675824.1 True 3475 mRNA 0.53 8 39517500 39594023

Neighbor

gene id symbol gene type direction distance location
hes1 hes1,her6,LOC107711114,LOC107680502,LOC107722674,LOC107685314,LOC107582845 coding upstream 305677 39209814 ~ 39211823 (+)
opa1 opa1,LOC107711112,LOC107582739,LOC107673572,LOC107585173 coding upstream 436389 39032127 ~ 39081111 (+)
cth cth,LOC102785392 coding upstream 1083643 38417049 ~ 38433857 (+)
nit2 nit2,LOC107582734,LOC107585165,LOC107673472,LOC107685305 coding upstream 1110203 38403349 ~ 38407297 (+)
LOC103035541 plcxd1,LOC103035541,LOC105895009,LOC107673474,LOC107711026,LOC107585164,LOC108441321,LOC107753403,LOC108271842 coding upstream 1129454 38381185 ~ 38388046 (+)
LOC103028032 brinp3a.1,LOC108441513,LOC107585174,LOC107711117,LOC107732447,LOC107685317 coding downstream 360450 39954473 ~ 40009536 (+)
LOC103027818 rgs8,LOC108441527,LOC108271678,LOC107711118,LOC107551030,LOC107732448,LOC107564081 coding downstream 630028 40224051 ~ 40259219 (+)
LOC103040699 LOC103040699,LOC108440142,LOC108271632 coding downstream 679363 40273386 ~ 40276489 (+)
LOC103040381 rgs5a,LOC108441543,LOC107732440,LOC107564083,LOC107685321,LOC107684230 coding downstream 724735 40318758 ~ 40339674 (+)
nos1ap nos1ap,LOC107711121,LOC107551033 coding downstream 823304 40417327 ~ 40567138 (+)
G117025 NA non-coding upstream 19142 39497799 ~ 39498358 (+)
G117008 NA non-coding upstream 87928 39429133 ~ 39429572 (+)
G117006 NA non-coding upstream 97707 39387514 ~ 39419793 (+)
G116994 NA non-coding upstream 163712 39353435 ~ 39353788 (+)
G116985 NA non-coding upstream 191731 39325543 ~ 39325769 (+)
G117071 NA non-coding downstream 244989 39839012 ~ 39847835 (+)
G117102 NA non-coding downstream 443277 40037300 ~ 40037531 (+)
G117108 NA non-coding downstream 497572 40091595 ~ 40091844 (+)
G117111 NA non-coding downstream 535069 40129092 ~ 40136727 (+)
G117147 NA non-coding downstream 766317 40360340 ~ 40362577 (+)
G116997 NA other upstream 158112 39358871 ~ 39359388 (+)
LOC103036266 LOC108441345 other upstream 1122970 38390277 ~ 38394530 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 1905178 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 2396173 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 2803616 36657392 ~ 36713884 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 1205448 40799471 ~ 40808545 (+)
fam183a NA other downstream 1565164 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 1759478 41353501 ~ 41367729 (+)
G117642 NA other downstream 2757784 42351807 ~ 42355784 (+)

Expression


Co-expression Network