zc3h3


Basic Information

Item Value
gene id zc3h3
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 42382928 ~ 42481727 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675858.1
GGTTTGATTACGCGGTGTTTTGGGCTCTAAACATGGCAGAGCGTGAAGCTTTACAGAAAGAAATCGAGGAGCTTCAAAACCTCATTAAGGACCACAAGAGAGTTCATGGTGATGGCCCGTCAAGCTCGGCTCCGTGGTTTTCAGCTGGACGTGGCCTGGGTAGAGGTCGAGGGCACAACCCACATAACACTCACTCGTATTCAGGTCAGGCCCAGACTTTTGCACCTCGCCATCCCAGCCAGTGGAGGAAAACATACTCTCTCAACAACAAGACCACCACAGCTCTTGGAGGAGGACCCTCTCAGGCTTCTGCGCCCTATCTAAACAAGACTCAACATGttagttctgcagtttctgtTGCTGGCTCGCTTGCGGACAGCCAAAAACCCAGTGGTGTCTGTAAGCTCAAGGAGACAACAGAGGCTCAGACTATTAAGAGCTGCACAGCACCTTTACAGAGCATTGGTAAGAAGGAATTGCCTCTTTCTGGTGACATTATCTCAGCCACTAGTGCGAACAGGACAGTACTGAAACCTATAACATCTAAAACTGAAACAGAAGTCAGTTCTAAAACAGTTCTTGCAGGATCTTCAACCACCAATGAACTAACTCAACAGAGTGAATGCGAAAAAAGGACAAATCTAACCGACACATCAAAAAGTGCATCACATATGGTTTGCGGCACTGCTACCTCATCTGCTACCTCCTGTGCCTTTAAAAATACGACGACTTCAGCACCCCTGCAAGCCAAACCTCACCTCACCAGCACCATTTCAACTAATAGGAGTGTGATTATAGCAACAGCTGTTAAAGACTTTTCTTCAACTCTGGAGACCACTCCTCCTCGGGCCAGCTCTAGTTCTGCATTAAGCCACAGAATTAAATTGGACTCAACAGCACATGTGCTGACAAAGCCCTCTGTCCTCAAGACATCACAGTTTACCTGGGTGAAGAGCCAAGGGACTACAATTAGCCAGCCTAAACCACAGATACACGCTGGCATTGACTCTTCTTCCAACTCTAAGCCTACTGTAGCATCAGGTTCTGCAGTTACTGGGATTGCTAATGTCAAGCATGACCACGGCTCAAACAAGAAGGGACATCGTAGACCTAGTCTTACATCAGGCTCTCCTAGAGCTTCAAAGTACTCCTGGGTGTCATCATCCTGCTCCAGAGGAACCCTAATCAAACAGCCAAACAAGCAACCTTCTCCCAAAGCTCTCAAGTTGCCCGGGAAAGTGACAAAGGAGGGATCAGACGGGACCAAAAAATTCACTAGTAGTTCTTCTACCATGTCAAAGAGGACTAAAACTAGTGGAGGTACTTCCACATCACATTCTAGCCATGGTAATTCCAATGCCAGCCGTTATTCCTGGAAGGCCCCAGCACAGAGCTCTTCTGTGGTTTCAGTTGGGTCTACCCCGCGGTCATCTCGAAAGGGATCTGTCTATCGATGGACTGCTCAGAAAGAGGGAAAAGATTCAGGTTTTGGATCAATTACGTCTCGAGTTCAGCATAGCCCTGCCACCACTCCTCCTTCTAGTAGTGGATTCAAGCTGAGGAGCAGAACAAAGATCATCAGGAGATGTACCAGCAGCCCTGCACCAGAGAGGAAGTCTGGCCCCTCTGTGGTGACTGTAAGGAGTCGTTATTCCCTGAGGAGGAGGACACACACTCCTGTAAGGACTCCAACTGGTTCCAGACGAGGCCATTCTAGGATGCTTGTCTCTTTTGGCAGACACAAGCTCCGGCGCCTCACTGCCTCCTCCCCCACCACTGCTGCATGGACCACGAGGACAGgtttttctcctctttctggACGGAGTTCAGTTCCACACAGGGTCATCAAAACCCGCTACAAGATTGACACACGCAGAGCTCACCTCCAGCACCACAACCCCGCACTGTCCTACAGAGTCAAGAGAATCCAGTCAGCCAGGAGTCTCCTGCAGAGTCGTCTGCGATCACCCCCGGATAGACAGTGGAGGGGGCGGGGCATGCGCTGGATAGGCGGGGCCCTGTACAGAGTCTCAGCCAATAAGCTTTCACGCACACAGACTACCAGCACATCATCTGCCAGATCAGCAAAGTGGTTCAGTTCACAGGAAGTATCCTCCAGCAGTGGAGTGAGGACATCCAGCATGAGACATGTTGCCAGTCGTGCGGTGCAGAGAAGTCTGGCTATCATCCGTCAGGCTCATCAGAAAAAGCAGCAGGCCAAACAGTACTGCATGTACTACAACCGTTTCGGCAAGTGCAACCGCGGCAGCAGCTGCCCCTACATTCATGATCCAGATAAGGTGGCTGTTTGTACCAGGTTTCTCAGAGGCACCTGTAAGCAGACAGATGGGACGTGTCCTTTCTCACACAAAGTGTCCAAAGAAAAGaTGCCTGTATGTTCGTACTTCTTGAAGGGAATCTGTAACAACAGTAGCTGTCCCTACAGCCATGTTTATGTGTCTCGCAAGGCAGACGTGTGTCAAGACTTCATCAGAGGCTACTGTCCTCAGGGAGAGAAGTGTAAGAAGAAACACACTCTTGTGTGTCCAGAGTTCTCCAGAACTGGTGCGTGTCCCAAAGGGTCCAAGTGTAAACTGCAGCACAGACAGAGAGCTAAGCGCACTGGATCCAGCCCCACCTCAGGCCCAGGCAAAAAAGCCCGCACAAAGAGATCTGAAACAAGCTTATCAGAGTCCACTGAGGCAGACGAGGGCACCACTCAATCGGGTTTCTCCAAGCTCCCCTCCTTCATCTCCCTGTCCAGTTCACCAGACACCCCGGAGACTGCTGACAGCCCCCCATGCCCCCCTGTAGCAGGAACAGAGGCCACAGGAAAGAAACTGCAAATCAAGCCTCGCTTCTAGGAAGTTCCAGAACTGTGGGACCTTTTTAACACACAGCTGATGGCTAGAACAGAAGGAGCTTTCAGGTTCAGGATTGAATGAGAGAATTTTTCagaaaaattgacaaaaagaAGATGCAGTGATTAATAAATGTCTGTATAATTTAGTGTAGAAAAGGCTGGATGTAGAATTTACCCTGAAAGAAGTGAGGTATAGGACTGTGCATCATTTCAGAAgtattttgatgtttttgaaAGCCTATAGCTTGTTGTGCagatatatcatttttttatgtaacacaCAGGTGCTTTCTTCAACTAATCTCTAATCTCAGGGACTCTCTTCTGTGCATGTGTCACTTTTAAATCAAtgtgattttagtttttattataagAGATGTATTGTTATTGTGCTATATTTAAGTTTGAAGACGTTTGTATTGGAAATAAATCATTAGATCTCAagtttttaaa

Function

NR:

description
zinc finger CCCH domain-containing protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675858.1 True 3316 mRNA 0.48 12 42382928 42481727

Neighbor

gene id symbol gene type direction distance location
LOC103033178 adcyap1r1b,LOC108441855,LOC108271541,LOC107692394,LOC107731652,LOC107717143 coding upstream 112897 42217514 ~ 42270031 (+)
ccdc17 NA coding upstream 269392 42101941 ~ 42113536 (+)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 coding upstream 283308 42089989 ~ 42099620 (+)
pik3r3 pik3r3,LOC107692397,LOC107717145,LOC107594617,LOC106584012,LOC107556985 coding upstream 581137 41486461 ~ 41801791 (+)
prpf38a prpf38a coding upstream 1035129 41343422 ~ 41347799 (+)
mafa mafa coding downstream 19176 42500903 ~ 42505218 (+)
usp1 usp1 coding downstream 255843 42737570 ~ 42745578 (+)
angptl3 angptl3 coding downstream 314062 42795789 ~ 42800804 (+)
atg4c atg4c,LOC107704517 coding downstream 345259 42826986 ~ 42844095 (+)
ror1 ror1,LOC107731648,LOC107556549,LOC107591177 coding downstream 769855 43251582 ~ 43312069 (+)
G117641 NA non-coding upstream 32196 42350179 ~ 42350732 (+)
LOC111193792 NA non-coding upstream 107773 42272215 ~ 42275155 (+)
LOC111193791 NA non-coding upstream 231265 42147777 ~ 42151663 (+)
G117530 nasp,LOC107683970,LOC107731628 non-coding upstream 245038 42131583 ~ 42137890 (+)
G117508 mast2 non-coding upstream 485565 41892200 ~ 41897363 (+)
LOC111193697 NA non-coding downstream 155457 42637184 ~ 42638504 (+)
G117704 dock7 non-coding downstream 267391 42749118 ~ 42751310 (+)
G117739 NA non-coding downstream 327752 42809479 ~ 42811563 (+)
G117743 NA non-coding downstream 363840 42845567 ~ 42846372 (+)
G117759 NA non-coding downstream 636814 43118541 ~ 43119083 (+)
G117642 NA other upstream 27144 42351807 ~ 42355784 (+)
pomgnt1 pomgnt1,LOC102776429 other upstream 1015199 41353501 ~ 41367729 (+)
fam183a NA other upstream 1216769 41159187 ~ 41166159 (+)
LOC103033994 LOC103033994,LOC108441647 other upstream 1574383 40799471 ~ 40808545 (+)
G116997 NA other upstream 3023540 39358871 ~ 39359388 (+)

Expression


Co-expression Network