LOC111193695


Basic Information

Item Value
gene id LOC111193695
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 41461930 ~ 41486224 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650632.1
AGGTGGGAAACAAAAGAGCCAGCACGATGCTGTGGTACAGTTATATGTACGTGACGTCGGCGGCCACGCCCCCCGCCGTCTATAATGAACAAAGTCATGGAaacctcagcagcagcagcagcaggaggaggaggaggctctCTGTAATTCTGGTGACCTGAAATGAGTTCTGCCTCTGGCTGATgtcaaaaagaagaagaattccACCCATCAGAGGTCAAGGGCTTTTTGGTGGGCCTGGCTCTTCAAGCTCTATGgaagaaagaTTTTTCTGCAGAAGCTGGAGAAACACTGACTGATGAAGTGTGTAATGGAAGGTATCACAGGAGCTTAGTGGGCTGGCTGTATCTATATAGGATAAGAGTTTGGAGAAGCCTTTAATGCCAAGTGAAATCTAGGAGGTGAAAACCTACAGTATGTAGAAGATCAGACTTAAGAAGAAGACCAGTtAAGACAGAAGGTCTACAAATGTAGAAaggcgtggtcgtcctgtaaagatgactgcaagagcacagcgcagaatgatcaatgagtgtatGACATCGTTGACAGAACCATTTAAAGCACCATTATTTTTCAGgGGCAGGTGATAAAGCAGTtatccaggaggtcattctggCCTCTATCACATCAGGCtggaggagggagaggaggcTGTCGTTCTGCACTGATAACACTGTGACGGACACAGATGGCCTGGGCCGGGTCCAGCTGTACTCTGAAGGTGTCCTCTGCACTTCTGATTCCACTGCTCACAAGATCTGTAATCGCATTGGTAAAAACAGAGGTGAAGCACAGGTTCAGTTCATAACCTGATGATTCAATGAATCAGGTAATCTAATGCCCCTTCCACATGTATGAGATTTCTGTCTGATTCGGGCCTCccatctacaaaaaaaaaaaaaataattatcactGAAAACTAAGTGCTTTCCAAGATAGAGATGTTTGAAAAGTGTAGATTGTCAGTGTTACAATTTAAGCTTTATGAAAGCACTGACAGCATAATGCATGCATGTTTCCTCTGGCTGCATCTCAAATACTTCCTTATTTCCTCAGTAGTGAACTACATGAGGCATGAAACTAGAGTGTCTACATGCAGATAGTACTAGATTTGTGATttcaacaaaataataaatgtaaataatgttctatacaaaaagcttttttattacagatttataatatttaagtttgtgaCTTGCATGATACACTACTTTGGGTATAGTATATGATTTGTGATTATACGGTTGATGTCACTGACCTATTGGTATAattcagaatattaaaaaaatagactatatTTGATTATACTCGTGACTGGAGGATCTacacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650632.1 True 1337 lncRNA 0.41 7 41461930 41486224

Neighbor

gene id symbol gene type direction distance location
tspan1 NA coding downstream 76289 41371036 ~ 41385641 (-)
orc1 orc1,LOC107725193,LOC105913168,LOC104957406 coding downstream 126401 41324722 ~ 41335529 (-)
c13h1orf210 NA coding downstream 201351 41251017 ~ 41260579 (-)
LOC103032504 ap1m3,LOC108441657,LOC107724146,LOC107684323,LOC108271949,LOC107692442,LOC106528254 coding downstream 212319 41224841 ~ 41249611 (-)
LOC103034848 NA coding downstream 684273 40755348 ~ 40777657 (-)
LOC111193790 NA coding upstream 95609 41581833 ~ 41582017 (-)
mast2 mast2 coding upstream 394744 41880968 ~ 42081872 (-)
tmem69 tmem69,LOC107579605 coding upstream 596993 42083217 ~ 42085827 (-)
nasp nasp,LOC107551040,LOC107594614 coding upstream 645353 42131577 ~ 42137885 (-)
akr1a1 akr1a1,akr1a1b,LOC107731642 coding upstream 653140 42139364 ~ 42151948 (-)
G117387 NA non-coding downstream 42984 41418726 ~ 41418946 (-)
G117383 pomgnt1 non-coding downstream 102047 41353509 ~ 41359883 (-)
G117381 NA non-coding downstream 111024 41349497 ~ 41350906 (-)
G117374 prpf38a non-coding downstream 114670 41343493 ~ 41347260 (-)
G117357 NA non-coding downstream 154469 41304537 ~ 41307461 (-)
G117496 NA non-coding upstream 314553 41800777 ~ 41801912 (-)
G117567 NA non-coding upstream 530534 42016758 ~ 42019530 (-)
G117569 NA non-coding upstream 576988 42063212 ~ 42064008 (-)
G117578 NA non-coding upstream 611507 42097731 ~ 42113059 (-)
G117623 NA non-coding upstream 730234 42216458 ~ 42217016 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other downstream 444116 40816133 ~ 41017814 (-)
LOC103034527 NA other downstream 692248 40731296 ~ 40769682 (-)
LOC103040080 LOC108440156 other downstream 1097970 40360319 ~ 40363960 (-)
LOC103028549 NA other downstream 2170902 39284217 ~ 39291028 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 2498236 38953162 ~ 38963694 (-)

Expression


Co-expression Network