LOC111193697


Basic Information

Item Value
gene id LOC111193697
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 42637184 ~ 42638504 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650634.1
ATCACCATAAAACAATCCACCAGGAAGTGGAAGAGCACTGACTCTGCTAAGGATACAGCACCACCGAAGAAACCTGAGATCAGTCTGAACAAAGAATCCTTCGGTTGTGTTCCTGTAAACAGAACAGTCCGCGTGGTGAATCCTGTTGCTCCGAGTAAGAGACGTGGCCGCAAGCGTCGCCGTAGGCCGAAGAAAAACGGGAATCCATGTCCTGCAAAACAAGCTTGACATGGACAGGCGGAGCTTCCTTCACTAAATGGAGAAGACACAAAGATTATCGATGATCTGTGCCGATGCTTTTCACTCCTGAGGGTTACTGAATAATCATTCGGGGCTGTGCCCCCCGGAtgcccaggccaggcgacgccccAGATCTGCACATTACAGCAGTGAACATCATCACAGATCCTGCCTTTACTCAGCATTAAACATGCTGGCTATGATTTATACTTTCCtcagtgactgtgtgtgttttttctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650634.1 True 480 lncRNA 0.49 4 42637184 42638504

Neighbor

gene id symbol gene type direction distance location
mafa mafa coding upstream 131966 42500903 ~ 42505218 (+)
zc3h3 NA coding upstream 155457 42382928 ~ 42481727 (+)
LOC103033178 adcyap1r1b,LOC108441855,LOC108271541,LOC107692394,LOC107731652,LOC107717143 coding upstream 367153 42217514 ~ 42270031 (+)
ccdc17 NA coding upstream 523648 42101941 ~ 42113536 (+)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 coding upstream 537564 42089989 ~ 42099620 (+)
usp1 usp1 coding downstream 99066 42737570 ~ 42745578 (+)
angptl3 angptl3 coding downstream 157285 42795789 ~ 42800804 (+)
atg4c atg4c,LOC107704517 coding downstream 188482 42826986 ~ 42844095 (+)
ror1 ror1,LOC107731648,LOC107556549,LOC107591177 coding downstream 613078 43251582 ~ 43312069 (+)
cachd1 cachd1,LOC107692379,LOC107556548 coding downstream 699938 43338442 ~ 43437797 (+)
G117647 NA non-coding upstream 200647 42368505 ~ 42436537 (+)
G117641 NA non-coding upstream 286452 42350179 ~ 42350732 (+)
LOC111193792 NA non-coding upstream 362029 42272215 ~ 42275155 (+)
LOC111193791 NA non-coding upstream 485521 42147777 ~ 42151663 (+)
G117530 nasp,LOC107683970,LOC107731628 non-coding upstream 499294 42131583 ~ 42137890 (+)
G117704 dock7 non-coding downstream 110614 42749118 ~ 42751310 (+)
G117739 NA non-coding downstream 170975 42809479 ~ 42811563 (+)
G117743 NA non-coding downstream 207063 42845567 ~ 42846372 (+)
G117759 NA non-coding downstream 480037 43118541 ~ 43119083 (+)
G117787 NA non-coding downstream 531732 43170236 ~ 43170687 (+)
G117642 NA other upstream 281400 42351807 ~ 42355784 (+)
pomgnt1 pomgnt1,LOC102776429 other upstream 1269455 41353501 ~ 41367729 (+)
fam183a NA other upstream 1471025 41159187 ~ 41166159 (+)
LOC103033994 LOC103033994,LOC108441647 other upstream 1828639 40799471 ~ 40808545 (+)
G116997 NA other upstream 3277796 39358871 ~ 39359388 (+)

Expression


Co-expression Network