LOC111193778


Basic Information

Item Value
gene id LOC111193778
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36501233 ~ 36503562 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650720.1
TTTGCAGTGCGGACCTGAGAGAGAACATGCACGCCCCGCCCCGCCCGGCCCCGCCCTGGACGCCGACCGCACCATTTCCCTCCCGCTGGAAGAGGCTCCTGTGGGAagtaaatggctgaaataaatatttCTGTTAGATTTTTTCCTGTTCCATGGATTCATTTGTGAAGAAGAAATTACATGAGTGGAAAACTGGACTCTCTGATTCCTAGGTCTGAGTatgaagaaatgaaaaaggaGTTTTCTTTACTGGACGATGCTTCCATTGTGGCGCTAGTTCCTGTGATTGGTCCCAGACTGAAACTGAGGTGACACCTCAGAAAACTGAATGAGatgCGCAAGGTGAAGAGGACAGAAGAGCTTCCGTCCGAGCtacaaagagaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650720.1 True 385 lncRNA 0.49 4 36501233 36503562

Neighbor

gene id symbol gene type direction distance location
LOC103021650 myl6,myl6b,LOC103021650,LOC108440770,LOC108271738,LOC107390870,LOC105013534,LOC107570608,LOC106950810 coding upstream 43144 36450998 ~ 36458089 (+)
tsfm tsfm coding upstream 51401 36446391 ~ 36449832 (+)
sumf1 sumf1,LOC107673603 coding upstream 67389 36428470 ~ 36433844 (+)
LOC103023734 NA coding upstream 161207 36335569 ~ 36340026 (+)
efcab12 NA coding upstream 165743 36330318 ~ 36335490 (+)
LOC103047611 LOC108440812,LOC108271743,LOC107711051,LOC107585122,LOC107673583,LOC107582696 coding downstream 56249 36559811 ~ 36576516 (+)
LOC103047301 NA coding downstream 73056 36576618 ~ 36596744 (+)
espl1 LOC107576721 coding downstream 94543 36598105 ~ 36616096 (+)
pfdn5 pfdn5,LOC107711057,LOC107673463,LOC107740577,LOC107667318 coding downstream 113814 36617376 ~ 36623011 (+)
LOC103045881 NA coding downstream 121473 36625035 ~ 36642464 (+)
G116255 NA non-coding upstream 38636 36416808 ~ 36462597 (+)
G116155 NA non-coding upstream 194471 36306350 ~ 36306762 (+)
G116138 NA non-coding upstream 277655 36189774 ~ 36223578 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding upstream 501177 35990033 ~ 36000056 (+)
G116050 NA non-coding upstream 568027 35930924 ~ 35933206 (+)
G116349 LOC108440912,LOC108439999 non-coding downstream 228586 36732148 ~ 36742014 (+)
G116359 NA non-coding downstream 319902 36823464 ~ 36831576 (+)
G116356 LOC103042096,LOC108440962 non-coding downstream 321732 36825294 ~ 36827868 (+)
G116353 LOC108440955,LOC108272218,LOC107711062,LOC100304745,LOC107585131,LOC107673602,LOC103386112 non-coding downstream 329927 36833489 ~ 36834522 (+)
G116360 NA non-coding downstream 337279 36840841 ~ 36843238 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 141456 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 513173 35982119 ~ 35988060 (+)
tomm6 NA other upstream 533355 35958543 ~ 35967878 (+)
G115931 NA other upstream 766874 35730379 ~ 35734359 (+)
G115917 NA other upstream 825198 35642874 ~ 35676035 (+)
LOC103044253 LOC108440873 other downstream 153830 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 596452 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 1021289 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 1886715 38390277 ~ 38394530 (+)
G116997 NA other downstream 2855309 39358871 ~ 39359388 (+)

Expression


Co-expression Network