LOC111193782


Basic Information

Item Value
gene id LOC111193782
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 37852643 ~ 37886735 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650724.1
CGAATGCACACAACCTTTCAGCCAAGTACTGAGAAAACTACTGAGAAACAGTGTTGCCGCTGCAGATATACAAACAAATAGCAGCATTTATCCTGCTGTTCCTTCTCTTTAAGCTTATCGACTTTACTGATGGAAACTCGTGAAGAAAAGGTGATTGAACCccctgaaaaaaaggaaaacagccTTGTTAAAAGTGGACACACATGAGACACCACTGTCATGAGACTGAATGAAGGTGATTGAACCCcctgaaaaaaaaggaaaacaaccTTGTTAAAAGTGGACACACATGAGACACCACTGAAACTGAATGAAGAAAGTTTTACAGTGTTGCCCTCCAAAATACCTTGAGGATGTACTGCTCCCTACCAGCCTGCACAGAATGGAAGATCAGAAGACTGGGGATTACTGATTATCCCTTGAACAAAAAGGGGACAGAGTCTGTAGCAGAGCTGTTTCATGCAGAGCAGCACTGTTATGAAATGGCCTACTGACCTATGTAAGGATTTAAGGTTTCCATTTATCTAATAATGTCTTTAAACATACTGTGTTTGCCCTACAGTACATAAGACTGTGATTCTCACTGACCTTTAAACACTTTCTGTCACAACATTAAATTCTGTTATTTAAATATGCTGTGGAAACTACAGCGTTTACATTTTTGCCATGCTTCTATTACTTTACTTTGTAAGAACGGTTTCTGTTTGTCCTAGAAGCATcagaaaatactaatactagaATACATTCCCCCAGTAAAATATTGTGCAACATATGGAATATCTCAGCATATACAGTGGCATACAAAAGTTTGTGGACCTTCAGGAAGATTAAGTAGACTAGAGAGGTCTACATTGTTCTACTATTCAGCAACACTTGCACAGATATTGCCTTCGTGGAAGAGTCATCAGAAAAAACCCTCTCCTCTATCTTTACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650724.1 True 935 lncRNA 0.39 4 37852643 37886735

Neighbor

gene id symbol gene type direction distance location
gabrg3 gabrg3 coding upstream 23112 37620036 ~ 37829531 (+)
LOC103043103 cnga3a,LOC108441138,LOC107585144,LOC107711084,LOC107733584,LOC108271559,LOC106560639 coding upstream 619434 37221320 ~ 37233209 (+)
LOC103044613 NA coding upstream 693323 37131574 ~ 37159320 (+)
LOC103046872 NA coding upstream 764151 37057441 ~ 37088492 (+)
LOC103046153 eif4b,LOC108441049 coding upstream 802235 37041366 ~ 37050408 (+)
nipa1 nipa1 coding downstream 261207 38147942 ~ 38154159 (+)
nipa2 nipa2,LOC107673599,LOC107582725,LOC107716965 coding downstream 268364 38155099 ~ 38164964 (+)
fndc9 fndc9 coding downstream 297590 38184325 ~ 38189931 (+)
chst7 chst7,LOC107582727 coding downstream 361239 38247974 ~ 38262903 (+)
rp2 rp2,LOC107753404,LOC107685300,LOC107711097 coding downstream 461133 38347868 ~ 38355991 (+)
G116580 NA non-coding upstream 51889 37800217 ~ 37800754 (+)
G116574 NA non-coding upstream 179557 37671836 ~ 37673086 (+)
G116553 NA non-coding upstream 416151 37436248 ~ 37436492 (+)
G116536 NA non-coding upstream 579641 37265276 ~ 37273002 (+)
G116539 NA non-coding upstream 599873 37252207 ~ 37252770 (+)
G116730 NA non-coding downstream 346739 38233474 ~ 38234081 (+)
G116837 zranb2,LOC107685308,LOC107726518 non-coding downstream 620046 38506781 ~ 38511435 (+)
G116841 NA non-coding downstream 650108 38536843 ~ 38537047 (+)
G116845 NA non-coding downstream 683669 38570404 ~ 38570657 (+)
G116852 NA non-coding downstream 740059 38626794 ~ 38628164 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 240321 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 731316 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 1138759 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 1492866 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 1864583 35982119 ~ 35988060 (+)
LOC103036266 LOC108441345 other downstream 503542 38390277 ~ 38394530 (+)
G116997 NA other downstream 1472136 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 2912736 40799471 ~ 40808545 (+)
fam183a NA other downstream 3272452 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 3466766 41353501 ~ 41367729 (+)

Expression


Co-expression Network