LOC111193788


Basic Information

Item Value
gene id LOC111193788
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 40717856 ~ 40721125 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650726.1
GTCACTCTTCTGCTGCGAGTCTTTATGGTAGCAGATTTTAGCAGCTTCATTATTTTCTCTTCACGAGACTTTGTTTATTACCCCGTCTTAAGAGCAGCGGCTCTGACTGAGAGAGGCTGAGATGTCTCACGCTGTGACTGAAGCGATGATCGAGTCCTATGCTCTGATGATCCTGGTTATGTCGACGTTTTTCGTGTATTTCTGCGGCATGGTGTGGGCTTTCTGCAACCCCAAACTCAGCGGCttagaggaggaagaggaggaggatgaagaggacAGGTTACAGTGTGAGGGAGACACTGGGAAGATTAGTGAAGTTTCACTGGACCAGTTTTTTTCCTTCCCTGCAGAGATGCAGAGCAGCGCAGACTGGTGGGATCAAGCCCCCAGAGCTGAGTTACCGTGGGCTCACACTTGTGGAGATCCAGTGTTTGTGGAGCTGCCTCCTCACAGCTGCTACATAAATTCCTCCTACGACGTAGATTAGTCCAGAAATACACCTAGATATTCCAGGCTACAACAGTGTGAACCAACTGGAAGCCCTACCAACCTAAGGGTCCTGACCTAAGGTGGGAGACACCTTCATCTTCTAATCCCACCCCCTGCTTTGGCCAGCAAAACCATAATAACTCCAGGAGGTGCTAAATGAATCACTGCATTCCAGAAGCATGCTTTCTATGATACTATAGAACAGGAAAACACCACACCTTATTTTGTAgagttttgttctgttttatgCACTGTTGTTGATTTATCATAGACATTTTGGTTGGGAGTTATGTTTTTATCATGACACATGTTATGGGGTTGATTTCCCAGATAGGGATTAGGACAAGTCCTGGACCAAGccctttttaatttaaatgaagatAAAAATCTCGATTCAGAATgctaggactaggcttaatccctgtttgggAAACTACCCTTTAATATCACTGACCCAAGGGTgagtttcccagacaggaaaTAAGCCCAGTTCGGGACTAAAGTTTCCTTTTAATAGgaaatgttcattaaaactgCTGTGTAGTGTAAGACTGGGGTTAATTCCTGTTTGGCAAACAGTCACTCTAGGGCTAGTATTgatttcccagacagggattaaattTAGTAATagactttttttccttttaatgatCTCCaatcaaaatgctgtgtagttcaGGAGAAACAAGCCCAAAAGGTTTTGTGACAACCTAGTCCACCCtggtcttggactacacagtatTTCAAATAgtgattttccattgaaagtaaTTAACATAATAAATGTTAGCATTTCATGTGTCTGGACCATGTTATCCATTTGTTAGTACTGCACTGTTCAATAAAAAGGCCAGTGCATGTCTTGAATAGCTACTCTTGTTTGTGTAACTTTATTCAGAATAATTTACAAATTcatccatttttaaaaatcctaAACTCAAAGACCACCAACCTACACCTCCAGTGAGAACTGCAGCTCCATACCAGCCCTTTCCAGACTGGATTAGTGATAAGAAAGAACAGATGCATGGCCCTATGTCCAGGGTCAGCAACTGGAAGGTGATGACCCAGCAGATTCAGTCTCCATGTGTGCTATAGCTGCCCTCTATCTGATTTAGGCTCATCTCACACAAAAGGGCGACATCATCTTTATATCAGCTGCCAAACGATGCTTTAGAGAACCAGCATTAACTACTAAAGCAACCACAGACACCAAAGTCAGTTAGAAAATTCGGTGTTTATAGTTGGAATGTTTCAAAGGCCAGATGTTAAAACTAatgatactgtaaaaaaaaaaaaaaaaaaaacatggaccaAAATTCATCATGTTGTCGAGTCTaggcagtagagaccagagaaCGAGCTAGACATAGTATCAGACTGCTTTCATTGCAGCAAAGAAAAGTTGTCCATTGAATGCACAGTTTGTCCAGTAAGTGTAACGCTTTAACAGTAAACGATCAGTTAATGTATTtctagtcaaagtcaaagtggtttttattgtcatttcagctatatacagagtacacagtgaaacgaaacaacgttcctccagggaccatggtgcacataaacacagttcttgacatttaaaagaagaaaaagttttttttcagtcCAACACATCTACACTATCTATAAGTGTTTGTTAATATgaccaaaagtaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650726.1 True 2176 lncRNA 0.41 2 40717856 40721125

Neighbor

gene id symbol gene type direction distance location
uhmk1 uhmk1,LOC107692420 coding downstream 81167 40619482 ~ 40636689 (-)
LOC111193786 NA coding downstream 1434941 39271790 ~ 39282915 (-)
lnp1 lnp1 coding downstream 1692694 39013038 ~ 39025162 (-)
LOC103031712 tmem45a,LOC107685333 coding downstream 1706102 39002702 ~ 39011754 (-)
LOC103032030 zgc:110788,LOC108440097,LOC107711028,LOC107673477,LOC107726515,LOC107585211,LOC107580362 coding downstream 1717691 38996878 ~ 39000165 (-)
LOC103034848 NA coding upstream 34223 40755348 ~ 40777657 (-)
LOC103032504 ap1m3,LOC108441657,LOC107724146,LOC107684323,LOC108271949,LOC107692442,LOC106528254 coding upstream 503716 41224841 ~ 41249611 (-)
c13h1orf210 NA coding upstream 529892 41251017 ~ 41260579 (-)
orc1 orc1,LOC107725193,LOC105913168,LOC104957406 coding upstream 603597 41324722 ~ 41335529 (-)
tspan1 NA coding upstream 649911 41371036 ~ 41385641 (-)
G117253 NA non-coding downstream 8064 40707782 ~ 40709792 (-)
G117240 NA non-coding downstream 64081 40653051 ~ 40653775 (-)
G117239 uap1,LOC107551035 non-coding downstream 67753 40642948 ~ 40650103 (-)
G117223 NA non-coding downstream 91714 40624337 ~ 40626142 (-)
G117235 NA non-coding downstream 103440 40614199 ~ 40614416 (-)
G117274 NA non-coding upstream 65096 40786221 ~ 40786527 (-)
G117276 slc35d1,slc35d1a,LOC108441641,LOC108272060,LOC101078039,LOC107551012 non-coding upstream 71630 40792755 ~ 40795804 (-)
G117277 slc35d1,slc35d1a,LOC108272060,LOC108441641,LOC107758361,LOC107551012,LOC107724140 non-coding upstream 74787 40795912 ~ 40797819 (-)
G117278 NA non-coding upstream 78474 40799599 ~ 40802426 (-)
G117300 NA non-coding upstream 370349 41091474 ~ 41091994 (-)
LOC103040080 LOC108440156 other downstream 353896 40360319 ~ 40363960 (-)
LOC103028549 NA other downstream 1426828 39284217 ~ 39291028 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 1754162 38953162 ~ 38963694 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other downstream 1818410 38630637 ~ 38899446 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other downstream 2333258 38381270 ~ 38384598 (-)
LOC103034527 NA other upstream 10171 40731296 ~ 40769682 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other upstream 95008 40816133 ~ 41017814 (-)

Expression


Co-expression Network