LOC111193791


Basic Information

Item Value
gene id LOC111193791
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 42147777 ~ 42151663 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650729.1
atttgttaaaacagctgtaataatgaataatgtctaaactagtgtcaattataattagttaagacattCTGTTGTAAGTATTATTAATTAGTGTAAcagtattgtaaagtgttaccatatgtTCCCTATTATACCAAAAACATGTGTTTAACTGTAAGATTAGCTCAGTATTCAGAGATGCATGTGTTTATTTTGACAAACTGTGCcgattagtgtttttttttatatttaatttaactgaATTCCATAAATTCCAGAATCAAGTTCAAGGTTATGTGTAAAAAGTTGAAAAAGattaacaaaattaaacttttgttGTTGCTTTTTCTGCTTGTTAGTGCTGTACTCATTGGTCAAACAGGGAACGTCTGatgATGAGCCTCTCGTACAGCTGACACTAAGCATAGGTTCTAAAAGGTTCCACAGAGAGGCTGTTGAGTTATTAAACACAACTGCAGTTCAAATCCAAGTAAATGTCACCAGCACCCATGACAGTTTTCACAACTCCACTGTGGCTGTGGAGAATCCAGAAAATGGGATATCAGTGAGAGGTAACTCTACAGATCACTCAGAGGAAGGACATGTCTCTACAGGATCCTGGGTTTGGGTGGTCTGTGCCATTGTCATCATTCTACTTCTCATTCCAGTGATCTTGCTGCTAGTACCGAGCTTCAGGCAGCGAATGTTTTTCCCAGTTGCAGCCCCCACAGGGGTGAGTACCCATCAGGAAATGCCTCAAACAAAACAGGATGCGACAGAGATCCAGTGGGACCTTGCCTGGATGGAGATGGCCAATTTGCTGGACAAGCAGCACTACCCTGGCAGCTGACCAGCCTGTGACACATTTGGctcttactaaaaaaaatcacaatacaaCACTGCAGAACCTCTGTGTGGGCGGTAAACTATGGTAGATTCTACAGCAGCGTAATCCTCATAATTAGAGATGTCTTTTTAAATAAGatacaacaacaataaacattGAACAATGTACATTTAAACAGGACTTTCTGCTCATAAACTATGACATCTGtcaatgtgtgtatttatatcttttttcttctaattttacCCCATTGTCTCCCCAATTTGTAAGGCCAGATACCAAATTCCTGTTTAAATaaactcccccatcactagtaatccCCCCAACACTAGAAGTTTTATTGAAAACAGGACCTCAACACAGCAGAAAAatgtctgttttaaaataaaaatatttaaaacatttttattgttattttcttcGTCCTGGTTAATATAAACTGGACAATTATGTCAGCTGTatgtttacacacatttgtgaTGTAATCAATTTTATTTGAGTGAATAAGCATTAATGAAAGCATGATTATCACAATTAAGCAGTTCTTAGAAAATTAATCTGAGCACTATGGCAGTGTAGGTAGGTTCAACTGGGTTAATGCTTCAAAAAGCTTTGTAAAAGCTATCTCTTATTAATAAGATGATCTTCGTAGATGGTTGAGTAACCTTATCAATgaggactctctctctctttctccatgttAAGATGTTCTTTATGCTGagatgcttttgggaaagtGCCCTAATCTTTAATTactgaagtgctgtaaaaattAATGATTGCTGTAATTATCGATGTTTGATGCCAACTGAAAATAAATTGGATATACTTTATAAGCAAGATAAGCAGTTatttgtttgggtgagtaatgTATGCATAAGTTATATAGGGAAAATGAAAATAGTCAAAAATATTATTAGAAACgtcaaatattttaaagttttaaatgccATAGGATGTTATGATGACGATGGTAGTGGTCTGGGAATTTCAGCtgattgctatcttggcaatggaaaacacaggtgcgccactgactgatttaatcCCAGACAGCAGTCACCAATCAGACGTCCCAACCTATTTTAGCTAAGCAGGTGGTCAATGTGCACCGTGCAGACTCAATGTACATATGCCACCACTTGTTACACATACAGACATGCCACAGTgtgcaaacccaacttttacaacaatacacagaatacaagataaaataacattgctaaattacaaaataataaaataataattgcacACACTTTTATCATTGTGTGGTTTggaggaagttgatttaacatttaagaaaaaatacttttttcttgtGATACATTTGAATGTTGCTTATTAATTAAAAGCAGTTTCTTATAAAGTAGATAGAAGGGCTAAACTCTAATTTACAATAAAGGAAACTGATATATACAGTGCCAGTTTATCTATAGTGAAAACAGTAATTCCAACTTGTTGAACAGTGTATGCTACACTAAGAAATACAGTGAACACTAGAGGGCAGGCACGACTTATCAGACGGGCCTGTTGCTGTTCAAAGCTGGCCTTCATCAGTTAAAGCCTCTTGCACTGCACTGATAAAGCAGAGCAGGGGACTGAACTGGGTAGATGTGAAAGGAGGACATTATTGTGATGCTGTTTGCTTAGAGGTCaaaataatatatcatatatatatattatataaa

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650729.1 True 2517 lncRNA 0.36 5 42147777 42151663

Neighbor

gene id symbol gene type direction distance location
ccdc17 NA coding upstream 34241 42101941 ~ 42113536 (+)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 coding upstream 48157 42089989 ~ 42099620 (+)
pik3r3 pik3r3,LOC107692397,LOC107717145,LOC107594617,LOC106584012,LOC107556985 coding upstream 345986 41486461 ~ 41801791 (+)
prpf38a prpf38a coding upstream 799978 41343422 ~ 41347799 (+)
mpl NA coding upstream 824159 41308576 ~ 41323618 (+)
LOC103033178 adcyap1r1b,LOC108441855,LOC108271541,LOC107692394,LOC107731652,LOC107717143 coding downstream 65851 42217514 ~ 42270031 (+)
zc3h3 NA coding downstream 231265 42382928 ~ 42481727 (+)
mafa mafa coding downstream 349240 42500903 ~ 42505218 (+)
usp1 usp1 coding downstream 585907 42737570 ~ 42745578 (+)
angptl3 angptl3 coding downstream 644126 42795789 ~ 42800804 (+)
G117530 nasp,LOC107683970,LOC107731628 non-coding upstream 9887 42131583 ~ 42137890 (+)
G117508 mast2 non-coding upstream 250414 41892200 ~ 41897363 (+)
G117396 NA non-coding upstream 274285 41802403 ~ 41873492 (+)
G117474 NA non-coding upstream 363570 41778951 ~ 41784207 (+)
G117379 NA non-coding upstream 795427 41350951 ~ 41352350 (+)
LOC111193792 NA non-coding downstream 120552 42272215 ~ 42275155 (+)
G117641 NA non-coding downstream 198516 42350179 ~ 42350732 (+)
G117647 NA non-coding downstream 216842 42368505 ~ 42436537 (+)
LOC111193697 NA non-coding downstream 485521 42637184 ~ 42638504 (+)
G117704 dock7 non-coding downstream 597455 42749118 ~ 42751310 (+)
pomgnt1 pomgnt1,LOC102776429 other upstream 780048 41353501 ~ 41367729 (+)
fam183a NA other upstream 981618 41159187 ~ 41166159 (+)
LOC103033994 LOC103033994,LOC108441647 other upstream 1339232 40799471 ~ 40808545 (+)
G116997 NA other upstream 2788389 39358871 ~ 39359388 (+)
LOC103036266 LOC108441345 other upstream 3753247 38390277 ~ 38394530 (+)
G117642 NA other downstream 200144 42351807 ~ 42355784 (+)

Expression


Co-expression Network