LOC111193792


Basic Information

Item Value
gene id LOC111193792
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 42272215 ~ 42275155 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650730.1
CTGAGGTTTCCCCTACTGAATTCTCCATTTCTCCaacagccgctcgcgttcagtaacgCTCTACACTGGGAGGCGGAGGAACAAACGCTTTGCGGCGCTGCAGTGTGACCGTAcctaaaactgagccggatcctcagAGACTgcacatgtgacgtaagtacgtaaagacgcagaagaactcccgcaaaAAGCGACCTGTCCCTTTTTAGAATAATTAAAgtcttagcagggatggtcgttccagcacactgataccattaaacactatattttattccttctccactcagaaatgcttctgctttcagtttagaaacaaaataatagaactgCAGCTTTAATTTAACCTAATATTTCTCATACTGTCCACATAtttagctgaggtaaagcttaagctgtccacaatgttttagtaaaattttaCAGTAATGAAAAATTATGGATTTtgtacaataaaaatgtatctttgaagcagaacaaaacaaaacaatatgaacaataaaaaaaaaaaaaaaaaacattgcaacttTAGGTCAACCACACATTAATGAAGCATTTGGCACATGTCCCTCTTTCTAGTATAATACAGCAGTAAATCTGTAGTGATAAATGCACAACACTGCCACACtcccacaaaaaaaatactaaactgTTATATAGGTGGTATTCTCAAGGGTATTCTCAGCtgcacatttcattacagagaacATAATAGTTATAATGTAGcacagaaaatgtaaatgtaaatataaaacactgtgctGAGCATGGTATAGTATTTTGACAATGAAATCCAGACATGCATTAATGTCTTTAACACAATATAAGGTTTATACCATATTCGCCAGCCATAGTgggaataaatgtatttaattgttttttatagtATCACTGTTCACCATATTGTCTGTCTTGACTCCAGCCACTGATTTTATTTGAGCATTTAAAAAGTATGgtcatacagtataaatatacaattatatcCACTCTTCCCCAAGAAAACTGAACTAAGTTAACATTAGAAGTACACAAACGGACAACACTGCGACTTGGGGTAGGTACATTACCACTGGTTGTACCATTGGGGTCTAAATTGTACACTGCTAAAACAAAATGATCaactatattatatactatactataaaatgtttttgagtgatgccatagaGGAACTATTtttggtttaataaaaaaaaaaaaaaaaactttttttgtagttgtttgaatatgaaaaacataGACCTGTCATGGTCTCTAAtttgattaaaacaatattttaccccaaagatatttaaaataaactacattattgtcattaaaattgtcatttaattaatgccactgatataattatcatatgataaaaatgaataaagcaaCAAAATCTAGGACTttctcaaagaaaaaaaaaaaacattataatatttaaacatgtttacatattgttccagaaataattaagataaaataaattattgtcgTTTTAAGACCATGTTCTggcaattatataataatagtttaataaCAGTAACCATCCTTTGCAACACTTATAATGGAATATAAAAAAGAtcctgaataaataataataaaaaaaattcacattGAAGATCCTTGGTGTTAATGGGCTCCCCTTACTCAATATATGACCTTGAGGTAAGCAAAATTACAAAGGTAATTTCCATATACTCTACGATAAATTGATAACGTAATTATCATAACAGGTCTAGAAGAACATATTCAGTATTTAAAGATGTTCACAtgaaggttcttcacactcGCTTCTTTATACACAAAATCTCTAACAAAATGGTTCCTGGTAGATTCAACACCGGTTCTTTTATGGTATCACTCAAAGAACCTTTGTAGCACCCATATTTCTATGAGTGAACCTGTACATTACCTTTTTCCTGACAGTACATGTTTTTCACACattcggaaaaaaaaaaaaaaaaaaacaaggaacagTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650730.1 True 1967 lncRNA 0.32 2 42272215 42275155

Neighbor

gene id symbol gene type direction distance location
LOC103033178 adcyap1r1b,LOC108441855,LOC108271541,LOC107692394,LOC107731652,LOC107717143 coding upstream 2184 42217514 ~ 42270031 (+)
ccdc17 NA coding upstream 158679 42101941 ~ 42113536 (+)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 coding upstream 172595 42089989 ~ 42099620 (+)
pik3r3 pik3r3,LOC107692397,LOC107717145,LOC107594617,LOC106584012,LOC107556985 coding upstream 470424 41486461 ~ 41801791 (+)
prpf38a prpf38a coding upstream 924416 41343422 ~ 41347799 (+)
zc3h3 NA coding downstream 107773 42382928 ~ 42481727 (+)
mafa mafa coding downstream 225748 42500903 ~ 42505218 (+)
usp1 usp1 coding downstream 462415 42737570 ~ 42745578 (+)
angptl3 angptl3 coding downstream 520634 42795789 ~ 42800804 (+)
atg4c atg4c,LOC107704517 coding downstream 551831 42826986 ~ 42844095 (+)
LOC111193791 NA non-coding upstream 120552 42147777 ~ 42151663 (+)
G117530 nasp,LOC107683970,LOC107731628 non-coding upstream 134325 42131583 ~ 42137890 (+)
G117508 mast2 non-coding upstream 374852 41892200 ~ 41897363 (+)
G117396 NA non-coding upstream 398723 41802403 ~ 41873492 (+)
G117474 NA non-coding upstream 488008 41778951 ~ 41784207 (+)
G117641 NA non-coding downstream 75024 42350179 ~ 42350732 (+)
G117647 NA non-coding downstream 93350 42368505 ~ 42436537 (+)
LOC111193697 NA non-coding downstream 362029 42637184 ~ 42638504 (+)
G117704 dock7 non-coding downstream 473963 42749118 ~ 42751310 (+)
G117739 NA non-coding downstream 534324 42809479 ~ 42811563 (+)
pomgnt1 pomgnt1,LOC102776429 other upstream 904486 41353501 ~ 41367729 (+)
fam183a NA other upstream 1106056 41159187 ~ 41166159 (+)
LOC103033994 LOC103033994,LOC108441647 other upstream 1463670 40799471 ~ 40808545 (+)
G116997 NA other upstream 2912827 39358871 ~ 39359388 (+)
LOC103036266 LOC108441345 other upstream 3877685 38390277 ~ 38394530 (+)
G117642 NA other downstream 76652 42351807 ~ 42355784 (+)

Expression


Co-expression Network